CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1228 | V1228L | nonsyn | Gta | Tta | 11833 | 11056 | 0.934336 | 25244-25246 | |
S | 1228 | V1228L | nonsyn | Gta | Cta | 11833 | 777 | 0.0656638 | 25244-25246 |
Details of the mutation V1228L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1228 | V1228L | Gta | Tta | 11056 | 11833 | All | 0.002115 |
S | 1228 | V1228L | Gta | Cta | 777 | 11833 | All | 0.000149 |
S | 1228 | V1228L | Gta | Tta | 2429 | 2535 | AY.4 | 0.003781 |
S | 1228 | V1228L | Gta | Cta | 106 | 2535 | AY.4 | 0.000165 |
S | 1228 | V1228L | Gta | Tta | 1784 | 1852 | B.1.1.7 | 0.001597 |
S | 1228 | V1228L | Gta | Cta | 68 | 1852 | B.1.1.7 | 0.000061 |
S | 1228 | V1228L | Gta | Tta | 1682 | 1683 | B.1.596 | 0.146567 |
S | 1228 | V1228L | Gta | Cta | 1 | 1683 | B.1.596 | 0.000087 |
S | 1228 | V1228L | Gta | Tta | 547 | 620 | B.1.617.2 | 0.00206 |
S | 1228 | V1228L | Gta | Cta | 73 | 620 | B.1.617.2 | 0.000275 |
S | 1228 | V1228L | Gta | Tta | 398 | 398 | B.1.625 | 0.936471 |
S | 1228 | V1228L | Gta | Tta | 243 | 317 | AY.44 | 0.001479 |
S | 1228 | V1228L | Gta | Cta | 74 | 317 | AY.44 | 0.00045 |
S | 1228 | V1228L | Gta | Tta | 273 | 294 | AY.43 | 0.00121 |
S | 1228 | V1228L | Gta | Cta | 21 | 294 | AY.43 | 0.000093 |
S | 1228 | V1228L | Gta | Tta | 253 | 265 | AY.39 | 0.006252 |
S | 1228 | V1228L | Gta | Cta | 12 | 265 | AY.39 | 0.000297 |
S | 1228 | V1228L | Gta | Tta | 254 | 265 | P.1 | 0.004002 |
S | 1228 | V1228L | Gta | Cta | 11 | 265 | P.1 | 0.000173 |
S | 1228 | V1228L | Gta | Tta | 264 | 264 | L.3 | 0.93617 |
S | 1228 | V1228L | Gta | Tta | 231 | 237 | B.1 | 0.002116 |
S | 1228 | V1228L | Gta | Cta | 6 | 237 | B.1 | 0.000055 |
S | 1228 | V1228L | Gta | Tta | 207 | 215 | B.1.2 | 0.001823 |
S | 1228 | V1228L | Gta | Cta | 8 | 215 | B.1.2 | 0.00007 |
S | 1228 | V1228L | Gta | Tta | 158 | 161 | AY.103 | 0.000981 |
S | 1228 | V1228L | Gta | Cta | 3 | 161 | AY.103 | 0.000019 |
S | 1228 | V1228L | Gta | Tta | 128 | 128 | B.1.221 | 0.009092 |
S | 1228 | V1228L | Gta | Cta | 81 | 115 | AY.29 | 0.001278 |
S | 1228 | V1228L | Gta | Tta | 34 | 115 | AY.29 | 0.000536 |
S | 1228 | V1228L | Gta | Tta | 98 | 111 | AY.102 | 0.002598 |
S | 1228 | V1228L | Gta | Cta | 13 | 111 | AY.102 | 0.000345 |
S | 1228 | V1228L | Gta | Tta | 88 | 89 | B.1.1 | 0.001596 |
S | 1228 | V1228L | Gta | Cta | 1 | 89 | B.1.1 | 0.000018 |
S | 1228 | V1228L | Gta | Tta | 63 | 80 | AY.25 | 0.000379 |
S | 1228 | V1228L | Gta | Cta | 17 | 80 | AY.25 | 0.000102 |
S | 1228 | V1228L | Gta | Tta | 36 | 64 | AY.3 | 0.000358 |
S | 1228 | V1228L | Gta | Cta | 28 | 64 | AY.3 | 0.000278 |
S | 1228 | V1228L | Gta | Tta | 62 | 62 | B.1.258.7 | 0.118547 |
S | 1228 | V1228L | Gta | Cta | 58 | 58 | AY.2 | 0.020655 |
S | 1228 | V1228L | Gta | Tta | 56 | 58 | B.1.160 | 0.001747 |
S | 1228 | V1228L | Gta | Cta | 2 | 58 | B.1.160 | 0.000062 |
S | 1228 | V1228L | Gta | Tta | 58 | 58 | B.1.236 | 0.119097 |
S | 1228 | V1228L | Gta | Tta | 56 | 56 | B.1.1.39 | 0.028542 |
S | 1228 | V1228L | Gta | Tta | 53 | 53 | B.1.258.15 | 1 |
S | 1228 | V1228L | Gta | Tta | 41 | 44 | B.1.177 | 0.00054 |
S | 1228 | V1228L | Gta | Cta | 3 | 44 | B.1.177 | 0.00004 |
S | 1228 | V1228L | Gta | Tta | 43 | 43 | AY.5 | 0.000888 |
S | 1228 | V1228L | Gta | Tta | 43 | 43 | B.1.526 | 0.001011 |
S | 1228 | V1228L | Gta | Tta | 39 | 41 | B.1.1.519 | 0.001549 |
S | 1228 | V1228L | Gta | Cta | 2 | 41 | B.1.1.519 | 0.000079 |
S | 1228 | V1228L | Gta | Tta | 38 | 40 | B.1.258.17 | 0.003951 |
S | 1228 | V1228L | Gta | Cta | 2 | 40 | B.1.258.17 | 0.000208 |
S | 1228 | V1228L | Gta | Tta | 34 | 38 | AY.20 | 0.001321 |
S | 1228 | V1228L | Gta | Cta | 4 | 38 | AY.20 | 0.000155 |
S | 1228 | V1228L | Gta | Tta | 36 | 36 | B.1.426 | 0.036327 |
S | 1228 | V1228L | Gta | Tta | 33 | 33 | AY.46.4 | 0.005429 |
S | 1228 | V1228L | Gta | Tta | 29 | 30 | AY.41 | 0.008524 |
S | 1228 | V1228L | Gta | Cta | 1 | 30 | AY.41 | 0.000294 |
S | 1228 | V1228L | Gta | Tta | 23 | 29 | AY.26 | 0.000651 |
S | 1228 | V1228L | Gta | Cta | 6 | 29 | AY.26 | 0.00017 |
S | 1228 | V1228L | Gta | Tta | 27 | 29 | B.1.243 | 0.001879 |
S | 1228 | V1228L | Gta | Cta | 2 | 29 | B.1.243 | 0.000139 |
S | 1228 | V1228L | Gta | Tta | 25 | 27 | AY.9.2 | 0.000918 |
S | 1228 | V1228L | Gta | Cta | 2 | 27 | AY.9.2 | 0.000073 |
S | 1228 | V1228L | Gta | Cta | 26 | 27 | AY.92 | 0.007469 |
S | 1228 | V1228L | Gta | Tta | 1 | 27 | AY.92 | 0.000287 |
S | 1228 | V1228L | Gta | Tta | 26 | 26 | B.1.637 | 0.0019 |
S | 1228 | V1228L | Gta | Tta | 24 | 24 | B.1.177.66 | 1 |
S | 1228 | V1228L | Gta | Tta | 19 | 22 | AY.33 | 0.001269 |
S | 1228 | V1228L | Gta | Cta | 3 | 22 | AY.33 | 0.0002 |
S | 1228 | V1228L | Gta | Tta | 21 | 21 | B.1.36 | 0.003064 |
S | 1228 | V1228L | Gta | Tta | 19 | 21 | B.1.427 | 0.000959 |
S | 1228 | V1228L | Gta | Cta | 2 | 21 | B.1.427 | 0.000101 |
S | 1228 | V1228L | Gta | Tta | 20 | 21 | D.2 | 0.001501 |
S | 1228 | V1228L | Gta | Cta | 1 | 21 | D.2 | 0.000075 |
S | 1228 | V1228L | Gta | Tta | 17 | 20 | P.1.14 | 0.000813 |
S | 1228 | V1228L | Gta | Cta | 3 | 20 | P.1.14 | 0.000143 |
S | 1228 | V1228L | Gta | Tta | 17 | 19 | AY.120 | 0.000632 |
S | 1228 | V1228L | Gta | Cta | 2 | 19 | AY.120 | 0.000074 |
S | 1228 | V1228L | Gta | Tta | 19 | 19 | B.1.429 | 0.000447 |
S | 1228 | V1228L | Gta | Tta | 19 | 19 | P.1.16 | 0.007108 |
S | 1228 | V1228L | Gta | Tta | 18 | 18 | B.1.181 | 0.352941 |
S | 1228 | V1228L | Gta | Tta | 17 | 17 | AY.34 | 0.001648 |
S | 1228 | V1228L | Gta | Tta | 15 | 17 | AY.6 | 0.000617 |
S | 1228 | V1228L | Gta | Cta | 2 | 17 | AY.6 | 0.000082 |
S | 1228 | V1228L | Gta | Tta | 17 | 17 | AY.82 | 0.023066 |
S | 1228 | V1228L | Gta | Tta | 15 | 17 | AY.9 | 0.001014 |
S | 1228 | V1228L | Gta | Cta | 2 | 17 | AY.9 | 0.000135 |
S | 1228 | V1228L | Gta | Tta | 16 | 17 | B.1.525 | 0.001811 |
S | 1228 | V1228L | Gta | Cta | 1 | 17 | B.1.525 | 0.000113 |
S | 1228 | V1228L | Gta | Tta | 12 | 16 | AY.61 | 0.001257 |
S | 1228 | V1228L | Gta | Cta | 4 | 16 | AY.61 | 0.000419 |
S | 1228 | V1228L | Gta | Tta | 13 | 16 | B.1.621 | 0.001151 |
S | 1228 | V1228L | Gta | Cta | 3 | 16 | B.1.621 | 0.000266 |
S | 1228 | V1228L | Gta | Tta | 12 | 15 | C.37 | 0.001393 |
S | 1228 | V1228L | Gta | Cta | 3 | 15 | C.37 | 0.000348 |
S | 1228 | V1228L | Gta | Tta | 15 | 15 | P.2 | 0.0028 |
S | 1228 | V1228L | Gta | Tta | 14 | 14 | AY.1 | 0.00554 |
S | 1228 | V1228L | Gta | Tta | 14 | 14 | AY.4.3 | 0.011785 |
S | 1228 | V1228L | Gta | Tta | 13 | 14 | AY.42 | 0.000523 |
S | 1228 | V1228L | Gta | Cta | 1 | 14 | AY.42 | 0.00004 |
S | 1228 | V1228L | Gta | Tta | 14 | 14 | B.1.570 | 0.041176 |
S | 1228 | V1228L | Gta | Tta | 13 | 13 | A.21 | 0.036011 |
S | 1228 | V1228L | Gta | Tta | 11 | 13 | AY.119 | 0.000388 |
S | 1228 | V1228L | Gta | Cta | 2 | 13 | AY.119 | 0.000071 |
S | 1228 | V1228L | Gta | Tta | 11 | 13 | AY.23 | 0.000767 |
S | 1228 | V1228L | Gta | Cta | 2 | 13 | AY.23 | 0.000139 |
S | 1228 | V1228L | Gta | Tta | 10 | 13 | AY.98 | 0.00079 |
S | 1228 | V1228L | Gta | Cta | 3 | 13 | AY.98 | 0.000237 |
S | 1228 | V1228L | Gta | Tta | 13 | 13 | B.1.258 | 0.000865 |
S | 1228 | V1228L | Gta | Tta | 9 | 13 | B.1.351 | 0.000268 |
S | 1228 | V1228L | Gta | Cta | 4 | 13 | B.1.351 | 0.000119 |
S | 1228 | V1228L | Gta | Cta | 13 | 13 | B.1.390 | 0.138298 |
S | 1228 | V1228L | Gta | Tta | 12 | 12 | AY.46 | 0.001249 |
S | 1228 | V1228L | Gta | Tta | 12 | 12 | AY.46.6 | 0.000866 |
S | 1228 | V1228L | Gta | Tta | 12 | 12 | B.1.177.56 | 0.008011 |
S | 1228 | V1228L | Gta | Tta | 12 | 12 | B.1.232 | 0.006448 |
S | 1228 | V1228L | Gta | Tta | 11 | 11 | AY.100 | 0.000506 |
S | 1228 | V1228L | Gta | Tta | 11 | 11 | AY.55 | 0.010092 |
S | 1228 | V1228L | Gta | Tta | 11 | 11 | B.1.474 | 0.020913 |
S | 1228 | V1228L | Gta | Cta | 6 | 11 | B.1.628 | 0.002114 |
S | 1228 | V1228L | Gta | Tta | 5 | 11 | B.1.628 | 0.001762 |
S | 1228 | V1228L | Gta | Tta | 11 | 11 | Q.3 | 0.001595 |
S | 1228 | V1228L | Gta | Tta | 10 | 10 | B.1.1.170 | 0.012469 |
S | 1228 | V1228L | Gta | Tta | 10 | 10 | B.1.118 | 0.067114 |
S | 1228 | V1228L | Gta | Tta | 7 | 10 | B.1.234 | 0.000924 |
S | 1228 | V1228L | Gta | Cta | 3 | 10 | B.1.234 | 0.000396 |
S | 1228 | V1228L | Gta | Tta | 10 | 10 | B.1.311 | 0.002746 |
S | 1228 | V1228L | Gta | Tta | 6 | 9 | AY.4.5 | 0.000645 |
S | 1228 | V1228L | Gta | Cta | 3 | 9 | AY.4.5 | 0.000322 |
S | 1228 | V1228L | Gta | Tta | 8 | 9 | AY.54 | 0.000763 |
S | 1228 | V1228L | Gta | Cta | 1 | 9 | AY.54 | 0.000095 |
S | 1228 | V1228L | Gta | Tta | 9 | 9 | AY.85 | 0.003845 |
S | 1228 | V1228L | Gta | Tta | 9 | 9 | B.1.240 | 0.00194 |
S | 1228 | V1228L | Gta | Cta | 9 | 9 | B.1.523 | 0.022059 |
S | 1228 | V1228L | Gta | Tta | 9 | 9 | R.1 | 0.00081 |
S | 1228 | V1228L | Gta | Tta | 8 | 8 | AY.111 | 0.001465 |
S | 1228 | V1228L | Gta | Tta | 8 | 8 | AY.117 | 0.000676 |
S | 1228 | V1228L | Gta | Tta | 8 | 8 | AY.16 | 0.003037 |
S | 1228 | V1228L | Gta | Tta | 8 | 8 | AY.88 | 0.007073 |
S | 1228 | V1228L | Gta | Tta | 8 | 8 | B.1.1.28 | 0.00249 |
S | 1228 | V1228L | Gta | Tta | 6 | 8 | B.1.1.318 | 0.001811 |
S | 1228 | V1228L | Gta | Cta | 2 | 8 | B.1.1.318 | 0.000604 |
S | 1228 | V1228L | Gta | Tta | 8 | 8 | B.1.1.326 | 0.014085 |
S | 1228 | V1228L | Gta | Tta | 8 | 8 | B.1.1.63 | 0.003086 |
S | 1228 | V1228L | Gta | Tta | 8 | 8 | B.1.210 | 0.017058 |
S | 1228 | V1228L | Gta | Tta | 8 | 8 | B.1.509 | 0.006926 |
S | 1228 | V1228L | Gta | Cta | 7 | 7 | AU.2 | 0.016949 |
S | 1228 | V1228L | Gta | Cta | 6 | 7 | AY.29.1 | 0.001323 |
S | 1228 | V1228L | Gta | Tta | 1 | 7 | AY.29.1 | 0.000221 |
S | 1228 | V1228L | Gta | Tta | 5 | 7 | AY.4.2 | 0.000108 |
S | 1228 | V1228L | Gta | Cta | 2 | 7 | AY.4.2 | 0.000043 |
S | 1228 | V1228L | Gta | Tta | 6 | 7 | B | 0.000767 |
S | 1228 | V1228L | Gta | Cta | 1 | 7 | B | 0.000128 |
S | 1228 | V1228L | Gta | Tta | 5 | 7 | B.1.1.216 | 0.004452 |
S | 1228 | V1228L | Gta | Cta | 2 | 7 | B.1.1.216 | 0.001781 |
S | 1228 | V1228L | Gta | Tta | 7 | 7 | B.1.1.512 | 0.2 |
S | 1228 | V1228L | Gta | Tta | 7 | 7 | B.1.177.2 | 0.031818 |
S | 1228 | V1228L | Gta | Tta | 7 | 7 | B.1.396 | 0.00494 |
S | 1228 | V1228L | Gta | Tta | 6 | 7 | B.1.564 | 0.002555 |
S | 1228 | V1228L | Gta | Cta | 1 | 7 | B.1.564 | 0.000426 |
S | 1228 | V1228L | Gta | Tta | 7 | 7 | B.1.577 | 0.004811 |
S | 1228 | V1228L | Gta | Tta | 5 | 6 | AY.39.1 | 0.000198 |
S | 1228 | V1228L | Gta | Cta | 1 | 6 | AY.39.1 | 0.00004 |
S | 1228 | V1228L | Gta | Tta | 6 | 6 | AY.75.1 | 0.001082 |
S | 1228 | V1228L | Gta | Tta | 4 | 6 | AY.98.1 | 0.000194 |
S | 1228 | V1228L | Gta | Cta | 2 | 6 | AY.98.1 | 0.000097 |
S | 1228 | V1228L | Gta | Tta | 6 | 6 | B.1.1.50 | 0.004073 |
S | 1228 | V1228L | Gta | Tta | 6 | 6 | B.1.1.528 | 0.028846 |
S | 1228 | V1228L | Gta | Tta | 6 | 6 | B.1.369 | 0.001711 |
S | 1228 | V1228L | Gta | Cta | 5 | 5 | A | 0.001935 |
S | 1228 | V1228L | Gta | Tta | 5 | 5 | AY.14 | 0.00044 |
S | 1228 | V1228L | Gta | Tta | 4 | 5 | AY.27 | 0.000259 |
S | 1228 | V1228L | Gta | Cta | 1 | 5 | AY.27 | 0.000065 |
S | 1228 | V1228L | Gta | Tta | 5 | 5 | AY.3.1 | 0.000426 |
S | 1228 | V1228L | Gta | Cta | 4 | 5 | AY.36 | 0.000593 |
S | 1228 | V1228L | Gta | Tta | 1 | 5 | AY.36 | 0.000148 |
S | 1228 | V1228L | Gta | Tta | 5 | 5 | AY.45 | 0.000608 |
S | 1228 | V1228L | Gta | Tta | 5 | 5 | AY.47 | 0.000156 |
S | 1228 | V1228L | Gta | Tta | 5 | 5 | AY.84 | 0.002187 |
S | 1228 | V1228L | Gta | Tta | 4 | 5 | AY.99.2 | 0.000369 |
S | 1228 | V1228L | Gta | Cta | 1 | 5 | AY.99.2 | 0.000092 |
S | 1228 | V1228L | Gta | Tta | 5 | 5 | B.1.582 | 0.002453 |
S | 1228 | V1228L | Gta | Tta | 4 | 5 | B.1.617.1 | 0.000516 |
S | 1228 | V1228L | Gta | Cta | 1 | 5 | B.1.617.1 | 0.000129 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | AY.10 | 0.00212 |
S | 1228 | V1228L | Gta | Tta | 3 | 4 | AY.34.1 | 0.00153 |
S | 1228 | V1228L | Gta | Cta | 1 | 4 | AY.34.1 | 0.00051 |
S | 1228 | V1228L | Gta | Tta | 3 | 4 | AY.38 | 0.001498 |
S | 1228 | V1228L | Gta | Cta | 1 | 4 | AY.38 | 0.000499 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | AY.70 | 0.000834 |
S | 1228 | V1228L | Gta | Tta | 3 | 4 | AY.71 | 0.001425 |
S | 1228 | V1228L | Gta | Cta | 1 | 4 | AY.71 | 0.000475 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | AY.95 | 0.003044 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | AY.99.1 | 0.006211 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | B.1.1.10 | 0.004459 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | B.1.1.214 | 0.000222 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | B.1.1.222 | 0.000816 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | B.1.1.312 | 0.007648 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | B.1.1.389 | 0.024242 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | B.1.1.521 | 0.02139 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | B.1.111 | 0.0047 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | B.1.128 | 0.002541 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | B.1.177.7 | 0.000659 |
S | 1228 | V1228L | Gta | Cta | 4 | 4 | B.1.241 | 0.003247 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | B.1.400 | 0.001716 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | B.1.416 | 0.005076 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | B.1.466.2 | 0.001565 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | C.8 | 0.017857 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | N.3 | 0.023256 |
S | 1228 | V1228L | Gta | Tta | 4 | 4 | P.1.15 | 0.000929 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | A.2.5 | 0.001497 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | AY.113 | 0.000427 |
S | 1228 | V1228L | Gta | Tta | 2 | 3 | AY.12 | 0.000632 |
S | 1228 | V1228L | Gta | Cta | 1 | 3 | AY.12 | 0.000316 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | AY.121 | 0.000406 |
S | 1228 | V1228L | Gta | Cta | 3 | 3 | AY.57 | 0.001969 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | AY.68 | 0.000821 |
S | 1228 | V1228L | Gta | Cta | 2 | 3 | AY.7.1 | 0.000225 |
S | 1228 | V1228L | Gta | Tta | 1 | 3 | AY.7.1 | 0.000113 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | AY.74 | 0.000347 |
S | 1228 | V1228L | Gta | Cta | 3 | 3 | B.1.1.112 | 0.176471 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | B.1.1.294 | 0.003797 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | B.1.1.349 | 0.030928 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | B.1.1.424 | 0.136364 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | B.1.1.432 | 0.003797 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | B.1.177.12 | 0.000455 |
S | 1228 | V1228L | Gta | Tta | 2 | 3 | B.1.177.81 | 0.000379 |
S | 1228 | V1228L | Gta | Cta | 1 | 3 | B.1.177.81 | 0.000189 |
S | 1228 | V1228L | Gta | Tta | 2 | 3 | B.1.239 | 0.002442 |
S | 1228 | V1228L | Gta | Cta | 1 | 3 | B.1.239 | 0.001221 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | B.1.351.2 | 0.000908 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | B.1.36.8 | 0.003 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | B.1.422 | 0.002437 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | B.1.565 | 0.002431 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | B.1.595 | 0.000783 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | B.1.609 | 0.001438 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | B.1.617.3 | 0.008955 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | C.7 | 0.103448 |
S | 1228 | V1228L | Gta | Tta | 3 | 3 | P.1.13 | 0.002695 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | A.2.5.3 | 0.020619 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | AD.2 | 0.000438 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | AY.106 | 0.00067 |
S | 1228 | V1228L | Gta | Tta | 1 | 2 | AY.107 | 0.000466 |
S | 1228 | V1228L | Gta | Cta | 1 | 2 | AY.107 | 0.000466 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | AY.116.1 | 0.000623 |
S | 1228 | V1228L | Gta | Cta | 1 | 2 | AY.118 | 0.000063 |
S | 1228 | V1228L | Gta | Tta | 1 | 2 | AY.118 | 0.000063 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | AY.16.1 | 0.00094 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | AY.4.4 | 0.000818 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | AY.46.5 | 0.000397 |
S | 1228 | V1228L | Gta | Tta | 1 | 2 | AY.5.4 | 0.000277 |
S | 1228 | V1228L | Gta | Cta | 1 | 2 | AY.5.4 | 0.000277 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | AY.59 | 0.001059 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | AY.60 | 0.001876 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | AY.62 | 0.000871 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | AY.67 | 0.000929 |
S | 1228 | V1228L | Gta | Tta | 1 | 2 | AY.9.1 | 0.000084 |
S | 1228 | V1228L | Gta | Cta | 1 | 2 | AY.9.1 | 0.000084 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.1.243 | 0.008163 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.1.297 | 0.004474 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.1.306 | 0.000877 |
S | 1228 | V1228L | Gta | Tta | 1 | 2 | B.1.1.311 | 0.000358 |
S | 1228 | V1228L | Gta | Cta | 1 | 2 | B.1.1.311 | 0.000358 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.1.33 | 0.000842 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.1.372 | 0.001377 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.1.409 | 0.005666 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.177.11 | 0.003396 |
S | 1228 | V1228L | Gta | Cta | 1 | 2 | B.1.177.21 | 0.000076 |
S | 1228 | V1228L | Gta | Tta | 1 | 2 | B.1.177.21 | 0.000076 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.177.4 | 0.000422 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.177.44 | 0.001038 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.177.84 | 0.013333 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.252 | 0.013245 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.258.14 | 0.001961 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.265 | 0.002541 |
S | 1228 | V1228L | Gta | Cta | 1 | 2 | B.1.36.17 | 0.000494 |
S | 1228 | V1228L | Gta | Tta | 1 | 2 | B.1.36.17 | 0.000494 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.36.22 | 0.002415 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.36.37 | 0.005556 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.36.39 | 0.004435 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.362 | 0.003082 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.367 | 0.001585 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.499 | 0.002101 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.533 | 0.019231 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.551 | 0.002581 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.561 | 0.000794 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | B.1.623 | 0.001073 |
S | 1228 | V1228L | Gta | Cta | 1 | 2 | B.1.627 | 0.00202 |
S | 1228 | V1228L | Gta | Tta | 1 | 2 | B.1.627 | 0.00202 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | C.16 | 0.002121 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | C.36.3 | 0.001134 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | N.5 | 0.003534 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | P.1.17 | 0.000324 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | Q.1 | 0.000253 |
S | 1228 | V1228L | Gta | Tta | 2 | 2 | Q.8 | 0.00033 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | A.2 | 0.000662 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | A.2.2 | 0.001689 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | A.2.5.1 | 0.004808 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AE.8 | 0.000489 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.105 | 0.000643 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.108 | 0.001103 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.109 | 0.00074 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.110 | 0.000113 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.120.1 | 0.000321 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.19 | 0.00114 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.37 | 0.000316 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.40 | 0.000964 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.46.1 | 0.001027 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.46.2 | 0.000635 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.46.3 | 0.000934 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.5.3 | 0.000337 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.50 | 0.000799 |
S | 1228 | V1228L | Gta | Cta | 1 | 1 | AY.52 | 0.000814 |
S | 1228 | V1228L | Gta | Cta | 1 | 1 | AY.53 | 0.000288 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.56 | 0.001605 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.65 | 0.000533 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.72 | 0.001361 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.73 | 0.000665 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.78 | 0.001541 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | AY.8 | 0.000606 |
S | 1228 | V1228L | Gta | Cta | 1 | 1 | AZ.1 | 0.000867 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.1 | 0.000327 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.101 | 0.01 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.13 | 0.035714 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.139 | 0.022727 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.174 | 0.003378 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.176 | 0.000439 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.189 | 0.001513 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.192 | 0.002309 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.198 | 0.001468 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.220 | 0.001859 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.27 | 0.00565 |
S | 1228 | V1228L | Gta | Cta | 1 | 1 | B.1.1.282 | 0.011628 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.284 | 0.000107 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.289 | 0.002083 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.305 | 0.003861 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.308 | 0.011765 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.316 | 0.000925 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.337 | 0.003597 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.344 | 0.010753 |
S | 1228 | V1228L | Gta | Cta | 1 | 1 | B.1.1.348 | 0.000796 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.374 | 0.002375 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.398 | 0.003226 |
S | 1228 | V1228L | Gta | Cta | 1 | 1 | B.1.1.41 | 0.006329 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.411 | 0.014706 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.416 | 0.000905 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.421 | 0.030303 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.430 | 0.041667 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.507 | 0.008696 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.1.70 | 0.000341 |
S | 1228 | V1228L | Gta | Cta | 1 | 1 | B.1.177.18 | 0.00116 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.177.20 | 0.001517 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.177.58 | 0.001332 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.177.73 | 0.000566 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.177.74 | 0.015152 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.177.9 | 0.001332 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.189 | 0.004292 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.206 | 0.000816 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.214.2 | 0.0006 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.237 | 0.004975 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.289 | 0.00266 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.306 | 0.005714 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.340 | 0.004292 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.349 | 0.000715 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.351.3 | 0.000876 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.356 | 0.001727 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.36.18 | 0.00042 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.36.21 | 0.00216 |
S | 1228 | V1228L | Gta | Cta | 1 | 1 | B.1.36.35 | 0.002604 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.361 | 0.001289 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.378 | 0.006849 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.385 | 0.010638 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.395 | 0.007042 |
S | 1228 | V1228L | Gta | Cta | 1 | 1 | B.1.398 | 0.002976 |
S | 1228 | V1228L | Gta | Cta | 1 | 1 | B.1.409 | 0.000781 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.428 | 0.00102 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.438.1 | 0.000107 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.456 | 0.003268 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.459 | 0.004082 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.460 | 0.017857 |
S | 1228 | V1228L | Gta | Cta | 1 | 1 | B.1.469 | 0.00361 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.487 | 0.019608 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.497 | 0.000315 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.505 | 0.004386 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.571 | 0.009709 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.575 | 0.000303 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.580 | 0.004065 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.588 | 0.00091 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.589 | 0.007576 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.600 | 0.005848 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.606 | 0.006024 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.1.94 | 0.027027 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.39 | 0.002331 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.4.1 | 0.018868 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.40 | 0.000364 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | B.6.6 | 0.000889 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | C.1 | 0.002392 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | N.4 | 0.004255 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | N.9 | 0.005952 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | P.1.1 | 0.000318 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | P.1.12 | 0.000484 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | P.1.7 | 0.000319 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | P.1.9 | 0.004808 |
S | 1228 | V1228L | Gta | Tta | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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