CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V1228L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1228V1228LnonsynGtaTta11833110560.93433625244-25246
S1228V1228LnonsynGtaCta118337770.065663825244-25246

Details of the mutation V1228L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1228V1228LGtaTta1105611833All0.002115
S1228V1228LGtaCta77711833All0.000149
S1228V1228LGtaTta24292535AY.40.003781
S1228V1228LGtaCta1062535AY.40.000165
S1228V1228LGtaTta17841852B.1.1.70.001597
S1228V1228LGtaCta681852B.1.1.70.000061
S1228V1228LGtaTta16821683B.1.5960.146567
S1228V1228LGtaCta11683B.1.5960.000087
S1228V1228LGtaTta547620B.1.617.20.00206
S1228V1228LGtaCta73620B.1.617.20.000275
S1228V1228LGtaTta398398B.1.6250.936471
S1228V1228LGtaTta243317AY.440.001479
S1228V1228LGtaCta74317AY.440.00045
S1228V1228LGtaTta273294AY.430.00121
S1228V1228LGtaCta21294AY.430.000093
S1228V1228LGtaTta253265AY.390.006252
S1228V1228LGtaCta12265AY.390.000297
S1228V1228LGtaTta254265P.10.004002
S1228V1228LGtaCta11265P.10.000173
S1228V1228LGtaTta264264L.30.93617
S1228V1228LGtaTta231237B.10.002116
S1228V1228LGtaCta6237B.10.000055
S1228V1228LGtaTta207215B.1.20.001823
S1228V1228LGtaCta8215B.1.20.00007
S1228V1228LGtaTta158161AY.1030.000981
S1228V1228LGtaCta3161AY.1030.000019
S1228V1228LGtaTta128128B.1.2210.009092
S1228V1228LGtaCta81115AY.290.001278
S1228V1228LGtaTta34115AY.290.000536
S1228V1228LGtaTta98111AY.1020.002598
S1228V1228LGtaCta13111AY.1020.000345
S1228V1228LGtaTta8889B.1.10.001596
S1228V1228LGtaCta189B.1.10.000018
S1228V1228LGtaTta6380AY.250.000379
S1228V1228LGtaCta1780AY.250.000102
S1228V1228LGtaTta3664AY.30.000358
S1228V1228LGtaCta2864AY.30.000278
S1228V1228LGtaTta6262B.1.258.70.118547
S1228V1228LGtaCta5858AY.20.020655
S1228V1228LGtaTta5658B.1.1600.001747
S1228V1228LGtaCta258B.1.1600.000062
S1228V1228LGtaTta5858B.1.2360.119097
S1228V1228LGtaTta5656B.1.1.390.028542
S1228V1228LGtaTta5353B.1.258.151
S1228V1228LGtaTta4144B.1.1770.00054
S1228V1228LGtaCta344B.1.1770.00004
S1228V1228LGtaTta4343AY.50.000888
S1228V1228LGtaTta4343B.1.5260.001011
S1228V1228LGtaTta3941B.1.1.5190.001549
S1228V1228LGtaCta241B.1.1.5190.000079
S1228V1228LGtaTta3840B.1.258.170.003951
S1228V1228LGtaCta240B.1.258.170.000208
S1228V1228LGtaTta3438AY.200.001321
S1228V1228LGtaCta438AY.200.000155
S1228V1228LGtaTta3636B.1.4260.036327
S1228V1228LGtaTta3333AY.46.40.005429
S1228V1228LGtaTta2930AY.410.008524
S1228V1228LGtaCta130AY.410.000294
S1228V1228LGtaTta2329AY.260.000651
S1228V1228LGtaCta629AY.260.00017
S1228V1228LGtaTta2729B.1.2430.001879
S1228V1228LGtaCta229B.1.2430.000139
S1228V1228LGtaTta2527AY.9.20.000918
S1228V1228LGtaCta227AY.9.20.000073
S1228V1228LGtaCta2627AY.920.007469
S1228V1228LGtaTta127AY.920.000287
S1228V1228LGtaTta2626B.1.6370.0019
S1228V1228LGtaTta2424B.1.177.661
S1228V1228LGtaTta1922AY.330.001269
S1228V1228LGtaCta322AY.330.0002
S1228V1228LGtaTta2121B.1.360.003064
S1228V1228LGtaTta1921B.1.4270.000959
S1228V1228LGtaCta221B.1.4270.000101
S1228V1228LGtaTta2021D.20.001501
S1228V1228LGtaCta121D.20.000075
S1228V1228LGtaTta1720P.1.140.000813
S1228V1228LGtaCta320P.1.140.000143
S1228V1228LGtaTta1719AY.1200.000632
S1228V1228LGtaCta219AY.1200.000074
S1228V1228LGtaTta1919B.1.4290.000447
S1228V1228LGtaTta1919P.1.160.007108
S1228V1228LGtaTta1818B.1.1810.352941
S1228V1228LGtaTta1717AY.340.001648
S1228V1228LGtaTta1517AY.60.000617
S1228V1228LGtaCta217AY.60.000082
S1228V1228LGtaTta1717AY.820.023066
S1228V1228LGtaTta1517AY.90.001014
S1228V1228LGtaCta217AY.90.000135
S1228V1228LGtaTta1617B.1.5250.001811
S1228V1228LGtaCta117B.1.5250.000113
S1228V1228LGtaTta1216AY.610.001257
S1228V1228LGtaCta416AY.610.000419
S1228V1228LGtaTta1316B.1.6210.001151
S1228V1228LGtaCta316B.1.6210.000266
S1228V1228LGtaTta1215C.370.001393
S1228V1228LGtaCta315C.370.000348
S1228V1228LGtaTta1515P.20.0028
S1228V1228LGtaTta1414AY.10.00554
S1228V1228LGtaTta1414AY.4.30.011785
S1228V1228LGtaTta1314AY.420.000523
S1228V1228LGtaCta114AY.420.00004
S1228V1228LGtaTta1414B.1.5700.041176
S1228V1228LGtaTta1313A.210.036011
S1228V1228LGtaTta1113AY.1190.000388
S1228V1228LGtaCta213AY.1190.000071
S1228V1228LGtaTta1113AY.230.000767
S1228V1228LGtaCta213AY.230.000139
S1228V1228LGtaTta1013AY.980.00079
S1228V1228LGtaCta313AY.980.000237
S1228V1228LGtaTta1313B.1.2580.000865
S1228V1228LGtaTta913B.1.3510.000268
S1228V1228LGtaCta413B.1.3510.000119
S1228V1228LGtaCta1313B.1.3900.138298
S1228V1228LGtaTta1212AY.460.001249
S1228V1228LGtaTta1212AY.46.60.000866
S1228V1228LGtaTta1212B.1.177.560.008011
S1228V1228LGtaTta1212B.1.2320.006448
S1228V1228LGtaTta1111AY.1000.000506
S1228V1228LGtaTta1111AY.550.010092
S1228V1228LGtaTta1111B.1.4740.020913
S1228V1228LGtaCta611B.1.6280.002114
S1228V1228LGtaTta511B.1.6280.001762
S1228V1228LGtaTta1111Q.30.001595
S1228V1228LGtaTta1010B.1.1.1700.012469
S1228V1228LGtaTta1010B.1.1180.067114
S1228V1228LGtaTta710B.1.2340.000924
S1228V1228LGtaCta310B.1.2340.000396
S1228V1228LGtaTta1010B.1.3110.002746
S1228V1228LGtaTta69AY.4.50.000645
S1228V1228LGtaCta39AY.4.50.000322
S1228V1228LGtaTta89AY.540.000763
S1228V1228LGtaCta19AY.540.000095
S1228V1228LGtaTta99AY.850.003845
S1228V1228LGtaTta99B.1.2400.00194
S1228V1228LGtaCta99B.1.5230.022059
S1228V1228LGtaTta99R.10.00081
S1228V1228LGtaTta88AY.1110.001465
S1228V1228LGtaTta88AY.1170.000676
S1228V1228LGtaTta88AY.160.003037
S1228V1228LGtaTta88AY.880.007073
S1228V1228LGtaTta88B.1.1.280.00249
S1228V1228LGtaTta68B.1.1.3180.001811
S1228V1228LGtaCta28B.1.1.3180.000604
S1228V1228LGtaTta88B.1.1.3260.014085
S1228V1228LGtaTta88B.1.1.630.003086
S1228V1228LGtaTta88B.1.2100.017058
S1228V1228LGtaTta88B.1.5090.006926
S1228V1228LGtaCta77AU.20.016949
S1228V1228LGtaCta67AY.29.10.001323
S1228V1228LGtaTta17AY.29.10.000221
S1228V1228LGtaTta57AY.4.20.000108
S1228V1228LGtaCta27AY.4.20.000043
S1228V1228LGtaTta67B0.000767
S1228V1228LGtaCta17B0.000128
S1228V1228LGtaTta57B.1.1.2160.004452
S1228V1228LGtaCta27B.1.1.2160.001781
S1228V1228LGtaTta77B.1.1.5120.2
S1228V1228LGtaTta77B.1.177.20.031818
S1228V1228LGtaTta77B.1.3960.00494
S1228V1228LGtaTta67B.1.5640.002555
S1228V1228LGtaCta17B.1.5640.000426
S1228V1228LGtaTta77B.1.5770.004811
S1228V1228LGtaTta56AY.39.10.000198
S1228V1228LGtaCta16AY.39.10.00004
S1228V1228LGtaTta66AY.75.10.001082
S1228V1228LGtaTta46AY.98.10.000194
S1228V1228LGtaCta26AY.98.10.000097
S1228V1228LGtaTta66B.1.1.500.004073
S1228V1228LGtaTta66B.1.1.5280.028846
S1228V1228LGtaTta66B.1.3690.001711
S1228V1228LGtaCta55A0.001935
S1228V1228LGtaTta55AY.140.00044
S1228V1228LGtaTta45AY.270.000259
S1228V1228LGtaCta15AY.270.000065
S1228V1228LGtaTta55AY.3.10.000426
S1228V1228LGtaCta45AY.360.000593
S1228V1228LGtaTta15AY.360.000148
S1228V1228LGtaTta55AY.450.000608
S1228V1228LGtaTta55AY.470.000156
S1228V1228LGtaTta55AY.840.002187
S1228V1228LGtaTta45AY.99.20.000369
S1228V1228LGtaCta15AY.99.20.000092
S1228V1228LGtaTta55B.1.5820.002453
S1228V1228LGtaTta45B.1.617.10.000516
S1228V1228LGtaCta15B.1.617.10.000129
S1228V1228LGtaTta44AY.100.00212
S1228V1228LGtaTta34AY.34.10.00153
S1228V1228LGtaCta14AY.34.10.00051
S1228V1228LGtaTta34AY.380.001498
S1228V1228LGtaCta14AY.380.000499
S1228V1228LGtaTta44AY.700.000834
S1228V1228LGtaTta34AY.710.001425
S1228V1228LGtaCta14AY.710.000475
S1228V1228LGtaTta44AY.950.003044
S1228V1228LGtaTta44AY.99.10.006211
S1228V1228LGtaTta44B.1.1.100.004459
S1228V1228LGtaTta44B.1.1.2140.000222
S1228V1228LGtaTta44B.1.1.2220.000816
S1228V1228LGtaTta44B.1.1.3120.007648
S1228V1228LGtaTta44B.1.1.3890.024242
S1228V1228LGtaTta44B.1.1.5210.02139
S1228V1228LGtaTta44B.1.1110.0047
S1228V1228LGtaTta44B.1.1280.002541
S1228V1228LGtaTta44B.1.177.70.000659
S1228V1228LGtaCta44B.1.2410.003247
S1228V1228LGtaTta44B.1.4000.001716
S1228V1228LGtaTta44B.1.4160.005076
S1228V1228LGtaTta44B.1.466.20.001565
S1228V1228LGtaTta44C.80.017857
S1228V1228LGtaTta44N.30.023256
S1228V1228LGtaTta44P.1.150.000929
S1228V1228LGtaTta33A.2.50.001497
S1228V1228LGtaTta33AY.1130.000427
S1228V1228LGtaTta23AY.120.000632
S1228V1228LGtaCta13AY.120.000316
S1228V1228LGtaTta33AY.1210.000406
S1228V1228LGtaCta33AY.570.001969
S1228V1228LGtaTta33AY.680.000821
S1228V1228LGtaCta23AY.7.10.000225
S1228V1228LGtaTta13AY.7.10.000113
S1228V1228LGtaTta33AY.740.000347
S1228V1228LGtaCta33B.1.1.1120.176471
S1228V1228LGtaTta33B.1.1.2940.003797
S1228V1228LGtaTta33B.1.1.3490.030928
S1228V1228LGtaTta33B.1.1.4240.136364
S1228V1228LGtaTta33B.1.1.4320.003797
S1228V1228LGtaTta33B.1.177.120.000455
S1228V1228LGtaTta23B.1.177.810.000379
S1228V1228LGtaCta13B.1.177.810.000189
S1228V1228LGtaTta23B.1.2390.002442
S1228V1228LGtaCta13B.1.2390.001221
S1228V1228LGtaTta33B.1.351.20.000908
S1228V1228LGtaTta33B.1.36.80.003
S1228V1228LGtaTta33B.1.4220.002437
S1228V1228LGtaTta33B.1.5650.002431
S1228V1228LGtaTta33B.1.5950.000783
S1228V1228LGtaTta33B.1.6090.001438
S1228V1228LGtaTta33B.1.617.30.008955
S1228V1228LGtaTta33C.70.103448
S1228V1228LGtaTta33P.1.130.002695
S1228V1228LGtaTta22A.2.5.30.020619
S1228V1228LGtaTta22AD.20.000438
S1228V1228LGtaTta22AY.1060.00067
S1228V1228LGtaTta12AY.1070.000466
S1228V1228LGtaCta12AY.1070.000466
S1228V1228LGtaTta22AY.116.10.000623
S1228V1228LGtaCta12AY.1180.000063
S1228V1228LGtaTta12AY.1180.000063
S1228V1228LGtaTta22AY.16.10.00094
S1228V1228LGtaTta22AY.4.40.000818
S1228V1228LGtaTta22AY.46.50.000397
S1228V1228LGtaTta12AY.5.40.000277
S1228V1228LGtaCta12AY.5.40.000277
S1228V1228LGtaTta22AY.590.001059
S1228V1228LGtaTta22AY.600.001876
S1228V1228LGtaTta22AY.620.000871
S1228V1228LGtaTta22AY.670.000929
S1228V1228LGtaTta12AY.9.10.000084
S1228V1228LGtaCta12AY.9.10.000084
S1228V1228LGtaTta22B.1.1.2430.008163
S1228V1228LGtaTta22B.1.1.2970.004474
S1228V1228LGtaTta22B.1.1.3060.000877
S1228V1228LGtaTta12B.1.1.3110.000358
S1228V1228LGtaCta12B.1.1.3110.000358
S1228V1228LGtaTta22B.1.1.330.000842
S1228V1228LGtaTta22B.1.1.3720.001377
S1228V1228LGtaTta22B.1.1.4090.005666
S1228V1228LGtaTta22B.1.177.110.003396
S1228V1228LGtaCta12B.1.177.210.000076
S1228V1228LGtaTta12B.1.177.210.000076
S1228V1228LGtaTta22B.1.177.40.000422
S1228V1228LGtaTta22B.1.177.440.001038
S1228V1228LGtaTta22B.1.177.840.013333
S1228V1228LGtaTta22B.1.2520.013245
S1228V1228LGtaTta22B.1.258.140.001961
S1228V1228LGtaTta22B.1.2650.002541
S1228V1228LGtaCta12B.1.36.170.000494
S1228V1228LGtaTta12B.1.36.170.000494
S1228V1228LGtaTta22B.1.36.220.002415
S1228V1228LGtaTta22B.1.36.370.005556
S1228V1228LGtaTta22B.1.36.390.004435
S1228V1228LGtaTta22B.1.3620.003082
S1228V1228LGtaTta22B.1.3670.001585
S1228V1228LGtaTta22B.1.4990.002101
S1228V1228LGtaTta22B.1.5330.019231
S1228V1228LGtaTta22B.1.5510.002581
S1228V1228LGtaTta22B.1.5610.000794
S1228V1228LGtaTta22B.1.6230.001073
S1228V1228LGtaCta12B.1.6270.00202
S1228V1228LGtaTta12B.1.6270.00202
S1228V1228LGtaTta22C.160.002121
S1228V1228LGtaTta22C.36.30.001134
S1228V1228LGtaTta22N.50.003534
S1228V1228LGtaTta22P.1.170.000324
S1228V1228LGtaTta22Q.10.000253
S1228V1228LGtaTta22Q.80.00033
S1228V1228LGtaTta11A.20.000662
S1228V1228LGtaTta11A.2.20.001689
S1228V1228LGtaTta11A.2.5.10.004808
S1228V1228LGtaTta11AE.80.000489
S1228V1228LGtaTta11AY.1050.000643
S1228V1228LGtaTta11AY.1080.001103
S1228V1228LGtaTta11AY.1090.00074
S1228V1228LGtaTta11AY.1100.000113
S1228V1228LGtaTta11AY.120.10.000321
S1228V1228LGtaTta11AY.190.00114
S1228V1228LGtaTta11AY.370.000316
S1228V1228LGtaTta11AY.4.2.10.000149
S1228V1228LGtaTta11AY.400.000964
S1228V1228LGtaTta11AY.46.10.001027
S1228V1228LGtaTta11AY.46.20.000635
S1228V1228LGtaTta11AY.46.30.000934
S1228V1228LGtaTta11AY.5.30.000337
S1228V1228LGtaTta11AY.500.000799
S1228V1228LGtaCta11AY.520.000814
S1228V1228LGtaCta11AY.530.000288
S1228V1228LGtaTta11AY.560.001605
S1228V1228LGtaTta11AY.650.000533
S1228V1228LGtaTta11AY.720.001361
S1228V1228LGtaTta11AY.730.000665
S1228V1228LGtaTta11AY.780.001541
S1228V1228LGtaTta11AY.80.000606
S1228V1228LGtaCta11AZ.10.000867
S1228V1228LGtaTta11B.1.1.10.000327
S1228V1228LGtaTta11B.1.1.1010.01
S1228V1228LGtaTta11B.1.1.130.035714
S1228V1228LGtaTta11B.1.1.1390.022727
S1228V1228LGtaTta11B.1.1.1740.003378
S1228V1228LGtaTta11B.1.1.1760.000439
S1228V1228LGtaTta11B.1.1.1890.001513
S1228V1228LGtaTta11B.1.1.1920.002309
S1228V1228LGtaTta11B.1.1.1980.001468
S1228V1228LGtaTta11B.1.1.2200.001859
S1228V1228LGtaTta11B.1.1.270.00565
S1228V1228LGtaCta11B.1.1.2820.011628
S1228V1228LGtaTta11B.1.1.2840.000107
S1228V1228LGtaTta11B.1.1.2890.002083
S1228V1228LGtaTta11B.1.1.3050.003861
S1228V1228LGtaTta11B.1.1.3080.011765
S1228V1228LGtaTta11B.1.1.3160.000925
S1228V1228LGtaTta11B.1.1.3370.003597
S1228V1228LGtaTta11B.1.1.3440.010753
S1228V1228LGtaCta11B.1.1.3480.000796
S1228V1228LGtaTta11B.1.1.3740.002375
S1228V1228LGtaTta11B.1.1.3980.003226
S1228V1228LGtaCta11B.1.1.410.006329
S1228V1228LGtaTta11B.1.1.4110.014706
S1228V1228LGtaTta11B.1.1.4160.000905
S1228V1228LGtaTta11B.1.1.4210.030303
S1228V1228LGtaTta11B.1.1.4300.041667
S1228V1228LGtaTta11B.1.1.5070.008696
S1228V1228LGtaTta11B.1.1.700.000341
S1228V1228LGtaCta11B.1.177.180.00116
S1228V1228LGtaTta11B.1.177.200.001517
S1228V1228LGtaTta11B.1.177.580.001332
S1228V1228LGtaTta11B.1.177.730.000566
S1228V1228LGtaTta11B.1.177.740.015152
S1228V1228LGtaTta11B.1.177.90.001332
S1228V1228LGtaTta11B.1.1890.004292
S1228V1228LGtaTta11B.1.2060.000816
S1228V1228LGtaTta11B.1.214.20.0006
S1228V1228LGtaTta11B.1.2370.004975
S1228V1228LGtaTta11B.1.2890.00266
S1228V1228LGtaTta11B.1.3060.005714
S1228V1228LGtaTta11B.1.3400.004292
S1228V1228LGtaTta11B.1.3490.000715
S1228V1228LGtaTta11B.1.351.30.000876
S1228V1228LGtaTta11B.1.3560.001727
S1228V1228LGtaTta11B.1.36.180.00042
S1228V1228LGtaTta11B.1.36.210.00216
S1228V1228LGtaCta11B.1.36.350.002604
S1228V1228LGtaTta11B.1.3610.001289
S1228V1228LGtaTta11B.1.3780.006849
S1228V1228LGtaTta11B.1.3850.010638
S1228V1228LGtaTta11B.1.3950.007042
S1228V1228LGtaCta11B.1.3980.002976
S1228V1228LGtaCta11B.1.4090.000781
S1228V1228LGtaTta11B.1.4280.00102
S1228V1228LGtaTta11B.1.438.10.000107
S1228V1228LGtaTta11B.1.4560.003268
S1228V1228LGtaTta11B.1.4590.004082
S1228V1228LGtaTta11B.1.4600.017857
S1228V1228LGtaCta11B.1.4690.00361
S1228V1228LGtaTta11B.1.4870.019608
S1228V1228LGtaTta11B.1.4970.000315
S1228V1228LGtaTta11B.1.5050.004386
S1228V1228LGtaTta11B.1.5710.009709
S1228V1228LGtaTta11B.1.5750.000303
S1228V1228LGtaTta11B.1.5800.004065
S1228V1228LGtaTta11B.1.5880.00091
S1228V1228LGtaTta11B.1.5890.007576
S1228V1228LGtaTta11B.1.6000.005848
S1228V1228LGtaTta11B.1.6060.006024
S1228V1228LGtaTta11B.1.940.027027
S1228V1228LGtaTta11B.390.002331
S1228V1228LGtaTta11B.4.10.018868
S1228V1228LGtaTta11B.400.000364
S1228V1228LGtaTta11B.6.60.000889
S1228V1228LGtaTta11C.10.002392
S1228V1228LGtaTta11N.40.004255
S1228V1228LGtaTta11N.90.005952
S1228V1228LGtaTta11P.1.10.000318
S1228V1228LGtaTta11P.1.120.000484
S1228V1228LGtaTta11P.1.70.000319
S1228V1228LGtaTta11P.1.90.004808
S1228V1228LGtaTta11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.