CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V1176F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1176V1176FnonsynGttTtt130343130343125088-25090

Details of the mutation V1176F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1176V1176FGttTtt130343130343All0.02493
S1176V1176FGttTtt6258962589P.10.986026
S1176V1176FGttTtt2071420714P.1.140.990153
S1176V1176FGttTtt61156115P.1.170.989162
S1176V1176FGttTtt52855285P.20.986376
S1176V1176FGttTtt42614261P.1.150.990009
S1176V1176FGttTtt36503650P.1.100.983562
S1176V1176FGttTtt32063206B.1.1.280.997821
S1176V1176FGttTtt31133113P.1.70.993934
S1176V1176FGttTtt30233023P.1.10.960292
S1176V1176FGttTtt24302430P.1.160.909091
S1176V1176FGttTtt19501950P.1.120.943853
S1176V1176FGttTtt19031903B.1.1.70.001704
S1176V1176FGttTtt11431143P.1.17.11
S1176V1176FGttTtt10781078P.1.130.968553
S1176V1176FGttTtt10241024P.1.41
S1176V1176FGttTtt863863P.1.20.997688
S1176V1176FGttTtt730730B.1.617.20.002749
S1176V1176FGttTtt618618P.30.985646
S1176V1176FGttTtt520520B.1.20.004579
S1176V1176FGttTtt513513P.1.60.998054
S1176V1176FGttTtt384384AY.40.000598
S1176V1176FGttTtt318318P.61
S1176V1176FGttTtt264264B.1.3690.075299
S1176V1176FGttTtt263263B.1.177.750.273673
S1176V1176FGttTtt263263P.41
S1176V1176FGttTtt249249AY.1190.008792
S1176V1176FGttTtt246246B.10.002253
S1176V1176FGttTtt241241AY.430.001068
S1176V1176FGttTtt226226B.1.3240.362761
S1176V1176FGttTtt225225P.70.982533
S1176V1176FGttTtt209209P.1.81
S1176V1176FGttTtt208208P.1.91
S1176V1176FGttTtt149149AY.1030.000925
S1176V1176FGttTtt146146B.1.10.002649
S1176V1176FGttTtt127127B.1.3510.003775
S1176V1176FGttTtt113113AY.250.00068
S1176V1176FGttTtt112112P.1.10.10.910569
S1176V1176FGttTtt100100AY.650.053305
S1176V1176FGttTtt9898P.1.111
S1176V1176FGttTtt9494B.1.1770.001238
S1176V1176FGttTtt8989B.1.2580.005923
S1176V1176FGttTtt7373P.51
S1176V1176FGttTtt6767B.1.1.3780.489051
S1176V1176FGttTtt6161AY.46.60.004405
S1176V1176FGttTtt5959AY.440.000359
S1176V1176FGttTtt5252AY.260.001472
S1176V1176FGttTtt4848B.1.4290.001129
S1176V1176FGttTtt4444AY.30.000438
S1176V1176FGttTtt4444AY.980.003476
S1176V1176FGttTtt4040AY.4.20.000868
S1176V1176FGttTtt3636AY.1080.039691
S1176V1176FGttTtt3636AY.99.10.055901
S1176V1176FGttTtt3131B.1.1.3320.96875
S1176V1176FGttTtt3131B.1.2210.002202
S1176V1176FGttTtt2929P.1.31
S1176V1176FGttTtt2828B.1.1.3330.03014
S1176V1176FGttTtt2727C.370.003134
S1176V1176FGttTtt2626B.1.6210.002301
S1176V1176FGttTtt2424P.1.10.21
S1176V1176FGttTtt2222AY.1020.000583
S1176V1176FGttTtt1919B.1.360.002772
S1176V1176FGttTtt1818AY.610.001886
S1176V1176FGttTtt1818AY.7.10.002029
S1176V1176FGttTtt1818B.1.177.530.043062
S1176V1176FGttTtt1717AY.1210.0023
S1176V1176FGttTtt1717B.1.1600.00053
S1176V1176FGttTtt1616AY.390.000395
S1176V1176FGttTtt1515A.2.50.007485
S1176V1176FGttTtt1515AY.420.000603
S1176V1176FGttTtt1515B.1.1.2770.011381
S1176V1176FGttTtt1313AY.200.000505
S1176V1176FGttTtt1313AY.470.000404
S1176V1176FGttTtt1313P.1.51
S1176V1176FGttTtt1212AY.1200.000446
S1176V1176FGttTtt1212AY.4.50.00129
S1176V1176FGttTtt1111AY.1000.000506
S1176V1176FGttTtt1111AY.29.10.002426
S1176V1176FGttTtt1111AY.750.000616
S1176V1176FGttTtt1111B.1.4660.255814
S1176V1176FGttTtt1010AY.99.20.000922
S1176V1176FGttTtt99AY.230.000628
S1176V1176FGttTtt99AY.330.000601
S1176V1176FGttTtt99AY.690.00168
S1176V1176FGttTtt99AY.9.20.000331
S1176V1176FGttTtt99B.1.5250.001018
S1176V1176FGttTtt88AY.100.00424
S1176V1176FGttTtt88AY.730.005323
S1176V1176FGttTtt88AY.98.10.000387
S1176V1176FGttTtt88B.1.4700.011236
S1176V1176FGttTtt77A0.002709
S1176V1176FGttTtt77AY.340.000679
S1176V1176FGttTtt77B.1.3750.005738
S1176V1176FGttTtt66AY.1170.000507
S1176V1176FGttTtt66AY.1180.000376
S1176V1176FGttTtt66AY.5.30.002024
S1176V1176FGttTtt66AY.780.009245
S1176V1176FGttTtt66B.1.1.2180.046154
S1176V1176FGttTtt66B.1.177.860.001101
S1176V1176FGttTtt66B.1.5260.000141
S1176V1176FGttTtt66B.1.5960.000523
S1176V1176FGttTtt66C.37.10.015707
S1176V1176FGttTtt55AY.7.20.002796
S1176V1176FGttTtt55AY.770.005637
S1176V1176FGttTtt55AY.930.001365
S1176V1176FGttTtt55B.1.1.2610.043103
S1176V1176FGttTtt55B.1.1.330.002104
S1176V1176FGttTtt55B.1.177.790.01171
S1176V1176FGttTtt55B.1.617.10.000645
S1176V1176FGttTtt44AY.1060.00134
S1176V1176FGttTtt44AY.130.000644
S1176V1176FGttTtt44AY.75.10.000721
S1176V1176FGttTtt44AY.9.10.000335
S1176V1176FGttTtt44B.1.1.4640.005891
S1176V1176FGttTtt44B.1.177.440.002076
S1176V1176FGttTtt44B.1.4270.000202
S1176V1176FGttTtt44B.1.5950.001044
S1176V1176FGttTtt44D.20.0003
S1176V1176FGttTtt33A.2.40.010101
S1176V1176FGttTtt33AY.10.001187
S1176V1176FGttTtt33AY.1110.000549
S1176V1176FGttTtt33AY.270.000194
S1176V1176FGttTtt33AY.290.000047
S1176V1176FGttTtt33AY.450.000365
S1176V1176FGttTtt33AY.46.40.000494
S1176V1176FGttTtt33AY.50.000062
S1176V1176FGttTtt33AY.530.000863
S1176V1176FGttTtt33AY.700.000626
S1176V1176FGttTtt33AY.710.001425
S1176V1176FGttTtt33B0.000383
S1176V1176FGttTtt33B.1.1.4480.006098
S1176V1176FGttTtt33B.1.160.260.007264
S1176V1176FGttTtt33B.1.177.430.004431
S1176V1176FGttTtt33B.1.2400.000647
S1176V1176FGttTtt33B.1.36.100.014354
S1176V1176FGttTtt33B.1.36.80.003
S1176V1176FGttTtt33B.1.5640.001278
S1176V1176FGttTtt33B.1.6090.001438
S1176V1176FGttTtt33B.1.6370.000219
S1176V1176FGttTtt33B.400.001093
S1176V1176FGttTtt22AY.1050.001286
S1176V1176FGttTtt22AY.1140.000462
S1176V1176FGttTtt22AY.160.000759
S1176V1176FGttTtt22AY.16.10.00094
S1176V1176FGttTtt22AY.20.000712
S1176V1176FGttTtt22AY.360.000296
S1176V1176FGttTtt22AY.4.2.10.000298
S1176V1176FGttTtt22AY.460.000208
S1176V1176FGttTtt22AY.550.001835
S1176V1176FGttTtt22AY.60.000082
S1176V1176FGttTtt22AY.850.000854
S1176V1176FGttTtt22AY.90.000135
S1176V1176FGttTtt22AY.920.000575
S1176V1176FGttTtt22B.1.1.1810.009091
S1176V1176FGttTtt22B.1.1.3720.001377
S1176V1176FGttTtt22B.1.1.3820.071429
S1176V1176FGttTtt22B.1.1.5280.009615
S1176V1176FGttTtt22B.1.1.700.000682
S1176V1176FGttTtt22B.1.1390.001466
S1176V1176FGttTtt22B.1.177.570.000562
S1176V1176FGttTtt22B.1.2410.001623
S1176V1176FGttTtt22B.1.3110.000549
S1176V1176FGttTtt22B.1.4280.002041
S1176V1176FGttTtt22B.1.6000.011696
S1176V1176FGttTtt22B.1.6230.001073
S1176V1176FGttTtt22Q.10.000253
S1176V1176FGttTtt22Q.20.001227
S1176V1176FGttTtt22Q.30.00029
S1176V1176FGttTtt11A.20.000662
S1176V1176FGttTtt11A.2.20.001689
S1176V1176FGttTtt11AD.20.000219
S1176V1176FGttTtt11AY.1100.000113
S1176V1176FGttTtt11AY.1160.000287
S1176V1176FGttTtt11AY.120.10.000321
S1176V1176FGttTtt11AY.240.000431
S1176V1176FGttTtt11AY.3.10.000085
S1176V1176FGttTtt11AY.39.10.00004
S1176V1176FGttTtt11AY.39.1.10.000725
S1176V1176FGttTtt11AY.46.50.000198
S1176V1176FGttTtt11AY.540.000095
S1176V1176FGttTtt11AY.580.000907
S1176V1176FGttTtt11AY.600.000938
S1176V1176FGttTtt11AY.660.00107
S1176V1176FGttTtt11AY.670.000464
S1176V1176FGttTtt11AY.680.000274
S1176V1176FGttTtt11AY.790.001211
S1176V1176FGttTtt11AY.820.001357
S1176V1176FGttTtt11AY.840.000437
S1176V1176FGttTtt11AY.860.00083
S1176V1176FGttTtt11AY.870.000833
S1176V1176FGttTtt11AY.900.000684
S1176V1176FGttTtt11AY.940.000443
S1176V1176FGttTtt11AY.950.000761
S1176V1176FGttTtt11B.1.1.1280.007092
S1176V1176FGttTtt11B.1.1.1840.058824
S1176V1176FGttTtt11B.1.1.2220.000204
S1176V1176FGttTtt11B.1.1.2360.006897
S1176V1176FGttTtt11B.1.1.2890.002083
S1176V1176FGttTtt11B.1.1.3060.000438
S1176V1176FGttTtt11B.1.1.370.000193
S1176V1176FGttTtt11B.1.1.4090.002833
S1176V1176FGttTtt11B.1.1.5230.001563
S1176V1176FGttTtt11B.1.1.980.018519
S1176V1176FGttTtt11B.1.110.30.000718
S1176V1176FGttTtt11B.1.1400.018868
S1176V1176FGttTtt11B.1.160.150.00495
S1176V1176FGttTtt11B.1.160.300.002976
S1176V1176FGttTtt11B.1.177.110.001698
S1176V1176FGttTtt11B.1.177.160.000664
S1176V1176FGttTtt11B.1.177.170.000821
S1176V1176FGttTtt11B.1.177.330.001645
S1176V1176FGttTtt11B.1.177.450.000381
S1176V1176FGttTtt11B.1.177.560.000668
S1176V1176FGttTtt11B.1.177.60.000977
S1176V1176FGttTtt11B.1.177.70.000165
S1176V1176FGttTtt11B.1.2100.002132
S1176V1176FGttTtt11B.1.2140.003663
S1176V1176FGttTtt11B.1.214.20.0006
S1176V1176FGttTtt11B.1.2340.000132
S1176V1176FGttTtt11B.1.258.140.00098
S1176V1176FGttTtt11B.1.258.30.001675
S1176V1176FGttTtt11B.1.2980.002114
S1176V1176FGttTtt11B.1.3410.022727
S1176V1176FGttTtt11B.1.3490.000715
S1176V1176FGttTtt11B.1.36.220.001208
S1176V1176FGttTtt11B.1.36.310.001751
S1176V1176FGttTtt11B.1.370.014706
S1176V1176FGttTtt11B.1.3800.006623
S1176V1176FGttTtt11B.1.3960.000706
S1176V1176FGttTtt11B.1.4070.035714
S1176V1176FGttTtt11B.1.4110.003704
S1176V1176FGttTtt11B.1.4150.014286
S1176V1176FGttTtt11B.1.4360.001029
S1176V1176FGttTtt11B.1.4480.002625
S1176V1176FGttTtt11B.1.4680.005714
S1176V1176FGttTtt11B.1.5240.001406
S1176V1176FGttTtt11B.1.5450.014493
S1176V1176FGttTtt11B.1.5510.00129
S1176V1176FGttTtt11B.1.5610.000397
S1176V1176FGttTtt11B.1.5750.000303
S1176V1176FGttTtt11B.1.5760.000907
S1176V1176FGttTtt11B.1.5770.000687
S1176V1176FGttTtt11B.1.5820.000491
S1176V1176FGttTtt11B.1.596.10.009346
S1176V1176FGttTtt11B.1.6270.00202
S1176V1176FGttTtt11B.1.6340.003425
S1176V1176FGttTtt11B.1.6380.052632
S1176V1176FGttTtt11B.1.780.008547
S1176V1176FGttTtt11C.180.002591
S1176V1176FGttTtt11C.360.000911
S1176V1176FGttTtt11C.390.018868

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.