CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V1104L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1104V1104LnonsynGtaTta40268397730.98770724872-24874
S1104V1104LnonsynGtaCta402684930.01224324872-24874
S1104V1104LnonsynGtATtG4026820.000049667224872-24874

Details of the mutation V1104L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1104V1104LGtaTta3977340268All0.007607
S1104V1104LGtaCta49340268All0.000094
S1104V1104LGtATtG240268All0
S1104V1104LGtaTta2570325703AY.200.998951
S1104V1104LGtaTta65136514AY.360.965318
S1104V1104LGtATtG16514AY.360.000148
S1104V1104LGtaTta13921411B.1.617.20.005241
S1104V1104LGtaCta191411B.1.617.20.000072
S1104V1104LGtaTta834967B.1.1.70.000747
S1104V1104LGtaCta133967B.1.1.70.000119
S1104V1104LGtaTta720818AY.40.001121
S1104V1104LGtaCta98818AY.40.000153
S1104V1104LGtaTta591596AY.430.002618
S1104V1104LGtaCta5596AY.430.000022
S1104V1104LGtaTta417417AY.220.872385
S1104V1104LGtaTta270274B.1.10.004898
S1104V1104LGtaCta4274B.1.10.000073
S1104V1104LGtaTta199236AY.260.005634
S1104V1104LGtaCta37236AY.260.001047
S1104V1104LGtaTta157196AY.440.000956
S1104V1104LGtaCta39196AY.440.000237
S1104V1104LGtaTta181181B.1.177.750.188345
S1104V1104LGtaTta172172B.1.160.320.738197
S1104V1104LGtaTta134146AY.250.000806
S1104V1104LGtaCta12146AY.250.000072
S1104V1104LGtaTta137142B.1.1770.001804
S1104V1104LGtaCta5142B.1.1770.000066
S1104V1104LGtaTta8897AY.1030.000546
S1104V1104LGtaCta997AY.1030.000056
S1104V1104LGtaTta7195B.1.4290.001671
S1104V1104LGtaCta2495B.1.4290.000565
S1104V1104LGtaTta7282AY.50.001487
S1104V1104LGtaCta1082AY.50.000206
S1104V1104LGtaTta7778AY.1170.006508
S1104V1104LGtaCta178AY.1170.000085
S1104V1104LGtaTta7277AY.30.000716
S1104V1104LGtaCta577AY.30.00005
S1104V1104LGtaTta7677B.10.000696
S1104V1104LGtaCta177B.10.000009
S1104V1104LGtaTta7475AY.420.002977
S1104V1104LGtaCta175AY.420.00004
S1104V1104LGtaTta7474B.1.3510.0022
S1104V1104LGtaTta5960AY.1210.007984
S1104V1104LGtaCta160AY.1210.000135
S1104V1104LGtaTta5454AY.450.006571
S1104V1104LGtaTta4851B.1.20.000423
S1104V1104LGtaCta351B.1.20.000026
S1104V1104LGtaTta4247AY.390.001038
S1104V1104LGtaCta547AY.390.000124
S1104V1104LGtaTta4345AY.1200.001599
S1104V1104LGtaCta245AY.1200.000074
S1104V1104LGtaTta4545B.1.1.2280.137195
S1104V1104LGtaTta4245P.10.000662
S1104V1104LGtaCta345P.10.000047
S1104V1104LGtaTta4242AY.310.777778
S1104V1104LGtaTta3838AY.1190.001342
S1104V1104LGtaTta3636B.1.177.440.018682
S1104V1104LGtaTta3232B.1.1.5190.001271
S1104V1104LGtaTta3232P.1.170.005176
S1104V1104LGtaTta2930AY.230.002023
S1104V1104LGtaCta130AY.230.00007
S1104V1104LGtaTta2727AY.920.007756
S1104V1104LGtaTta2626B.1.360.003793
S1104V1104LGtaTta2525AY.1040.049603
S1104V1104LGtaTta2525AY.980.001975
S1104V1104LGtaTta2425B.1.1.330.010101
S1104V1104LGtaCta125B.1.1.330.000421
S1104V1104LGtaTta2525B.1.2400.005389
S1104V1104LGtaTta2525B.1.466.20.009781
S1104V1104LGtaTta2122AY.4.20.000455
S1104V1104LGtaCta122AY.4.20.000022
S1104V1104LGtaTta2121AY.330.001402
S1104V1104LGtaTta1920AY.540.001812
S1104V1104LGtaCta120AY.540.000095
S1104V1104LGtaCta2020L.41
S1104V1104LGtaTta1819AY.98.10.000872
S1104V1104LGtaCta119AY.98.10.000048
S1104V1104LGtaTta1919B.1.1.4330.027066
S1104V1104LGtaTta1919B.1.1.500.012899
S1104V1104LGtaTta1618AY.1020.000424
S1104V1104LGtaCta218AY.1020.000053
S1104V1104LGtaTta1818AY.470.00056
S1104V1104LGtaTta1617AY.550.014679
S1104V1104LGtATtG117AY.550.000917
S1104V1104LGtaTta1717B.1.1.2990.207317
S1104V1104LGtaTta1717B.1.1.3411
S1104V1104LGtaTta1616AY.1180.001002
S1104V1104LGtaTta1616AY.46.40.002632
S1104V1104LGtaTta1516AY.5.30.005061
S1104V1104LGtaCta116AY.5.30.000337
S1104V1104LGtaTta1616B.1.1.390.008155
S1104V1104LGtaTta1315AY.1000.000598
S1104V1104LGtaCta215AY.1000.000092
S1104V1104LGtaTta1515AY.340.001454
S1104V1104LGtaTta1015B.1.5260.000235
S1104V1104LGtaCta515B.1.5260.000118
S1104V1104LGtaTta1414AY.1130.001993
S1104V1104LGtaTta1414AY.1140.003235
S1104V1104LGtaTta1414AY.460.001457
S1104V1104LGtaTta1414AY.750.000784
S1104V1104LGtaTta1313AY.1060.004354
S1104V1104LGtaTta1313AY.780.020031
S1104V1104LGtaTta1113B.1.1600.000343
S1104V1104LGtaCta213B.1.1600.000062
S1104V1104LGtaTta1212AY.46.20.007624
S1104V1104LGtaTta1212AY.46.60.000866
S1104V1104LGtaTta1212B.1.2430.000835
S1104V1104LGtaTta1111AY.290.000174
S1104V1104LGtaTta1111B.1.177.810.002083
S1104V1104LGtaTta1111B.1.2320.005911
S1104V1104LGtaTta1010AY.1110.001832
S1104V1104LGtaTta1010AY.39.10.000396
S1104V1104LGtaTta1010AY.840.004374
S1104V1104LGtaTta99B.1.1.4160.008145
S1104V1104LGtaTta88AY.116.10.002491
S1104V1104LGtaTta88AY.9.10.00067
S1104V1104LGtaTta88AY.950.006088
S1104V1104LGtaTta88B0.001022
S1104V1104LGtaCta78B.1.1.3160.006475
S1104V1104LGtaTta18B.1.1.3160.000925
S1104V1104LGtaTta47AY.1160.001147
S1104V1104LGtaCta37AY.1160.00086
S1104V1104LGtaTta77AY.160.002658
S1104V1104LGtaTta77AY.320.003727
S1104V1104LGtaTta77AY.370.002212
S1104V1104LGtaTta77AY.4.30.005892
S1104V1104LGtaTta77AY.480.003256
S1104V1104LGtaTta77AY.75.10.001262
S1104V1104LGtaTta77B.1.1110.008226
S1104V1104LGtaTta77B.1.4270.000353
S1104V1104LGtaTta77B.1.4480.018373
S1104V1104LGtaTta66AY.1080.006615
S1104V1104LGtaTta66AY.500.004796
S1104V1104LGtaTta46AY.580.00363
S1104V1104LGtaCta26AY.580.001815
S1104V1104LGtaTta66AY.730.003992
S1104V1104LGtaTta66AY.740.000694
S1104V1104LGtaTta66AY.930.001638
S1104V1104LGtaTta66AY.99.20.000553
S1104V1104LGtaTta66B.1.1.10.00196
S1104V1104LGtaTta66B.1.1.2190.03
S1104V1104LGtaTta66B.1.1.3060.00263
S1104V1104LGtaTta46B.1.1.370.000771
S1104V1104LGtaCta26B.1.1.370.000386
S1104V1104LGtaTta66B.1.1.4190.044444
S1104V1104LGtaTta66B.1.160.300.017857
S1104V1104LGtaTta66B.1.5250.000679
S1104V1104LGtaTta55AY.1050.003215
S1104V1104LGtaTta55AY.1100.000563
S1104V1104LGtaTta45AY.46.30.003735
S1104V1104LGtaCta15AY.46.30.000934
S1104V1104LGtaTta55AY.560.008026
S1104V1104LGtaTta55AY.690.000933
S1104V1104LGtaTta55AY.860.004149
S1104V1104LGtaTta55B.1.1.1740.016892
S1104V1104LGtaTta55B.1.1.2220.00102
S1104V1104LGtaTta55B.1.177.830.007407
S1104V1104LGtaCta35B.1.6210.000266
S1104V1104LGtaTta25B.1.6210.000177
S1104V1104LGtaTta55C.370.00058
S1104V1104LGtaTta44AY.100.00212
S1104V1104LGtaTta44AY.130.000644
S1104V1104LGtaTta44AY.3.10.000341
S1104V1104LGtaTta44AY.380.001997
S1104V1104LGtaTta44AY.590.002119
S1104V1104LGtaTta44AY.60.000165
S1104V1104LGtaTta44AY.710.0019
S1104V1104LGtaTta44AY.820.005427
S1104V1104LGtaTta44AY.90.00027
S1104V1104LGtaTta44AY.9.20.000147
S1104V1104LGtaTta44AY.900.002738
S1104V1104LGtaCta44B.1.1.1380.024242
S1104V1104LGtaTta44B.1.2580.000266
S1104V1104LGtaTta44B.1.3110.001098
S1104V1104LGtaCta24B.1.3690.00057
S1104V1104LGtaTta24B.1.3690.00057
S1104V1104LGtaCta24B.1.5960.000174
S1104V1104LGtaTta24B.1.5960.000174
S1104V1104LGtaTta44B.1.6090.001918
S1104V1104LGtaCta34C.360.002732
S1104V1104LGtaTta14C.360.000911
S1104V1104LGtaTta44P.1.140.000191
S1104V1104LGtaTta34P.20.00056
S1104V1104LGtaCta14P.20.000187
S1104V1104LGtaTta33AY.1090.002219
S1104V1104LGtaTta33AY.140.000264
S1104V1104LGtaTta33AY.190.003421
S1104V1104LGtaTta33AY.46.10.00308
S1104V1104LGtaTta33AY.510.002727
S1104V1104LGtaTta33AY.530.000863
S1104V1104LGtaTta33AY.770.003382
S1104V1104LGtaTta33AY.850.001282
S1104V1104LGtaTta33B.1.1.1530.003286
S1104V1104LGtaTta33B.1.1.2160.002671
S1104V1104LGtaTta33B.1.1.2800.009259
S1104V1104LGtaTta33B.1.1.540.009063
S1104V1104LGtaTta33B.1.1.710.018182
S1104V1104LGtaTta33B.1.160.160.002788
S1104V1104LGtaTta33B.1.1700.012931
S1104V1104LGtaTta33B.1.177.860.00055
S1104V1104LGtaTta33B.1.2870.090909
S1104V1104LGtaTta33B.1.36.380.004926
S1104V1104LGtaTta33B.1.5880.00273
S1104V1104LGtaTta33B.1.6050.017857
S1104V1104LGtaTta33B.1.617.10.000387
S1104V1104LGtaTta33B.1.6370.000219
S1104V1104LGtaTta33R.10.00027
S1104V1104LGtaTta220.111111
S1104V1104LGtaTta22AD.20.000438
S1104V1104LGtaTta22AU.20.004843
S1104V1104LGtaTta22AY.1010.000981
S1104V1104LGtaTta22AY.350.000466
S1104V1104LGtaTta22AY.4.50.000215
S1104V1104LGtaTta22AY.5.40.000553
S1104V1104LGtaTta22AY.610.00021
S1104V1104LGtaCta12AY.630.000387
S1104V1104LGtaTta12AY.630.000387
S1104V1104LGtaTta22AY.640.00119
S1104V1104LGtaTta22AY.680.000547
S1104V1104LGtaTta22AY.790.002421
S1104V1104LGtaTta22AY.810.003984
S1104V1104LGtaTta22AY.910.001461
S1104V1104LGtaTta22AY.990.002099
S1104V1104LGtaTta22AZ.10.001735
S1104V1104LGtaTta22B.1.1.280.000622
S1104V1104LGtaTta22B.1.1.2840.000215
S1104V1104LGtaTta22B.1.1.3170.000823
S1104V1104LGtaTta22B.1.1.3260.003521
S1104V1104LGtaTta22B.1.1.3720.001377
S1104V1104LGtaTta22B.1.1.5220.034483
S1104V1104LGtaCta22B.1.1280.001271
S1104V1104LGtaTta22B.1.177.430.002954
S1104V1104LGtaTta22B.1.177.880.024691
S1104V1104LGtaTta22B.1.177.890.04878
S1104V1104LGtaTta22B.1.2100.004264
S1104V1104LGtaTta22B.1.2410.001623
S1104V1104LGtaTta22B.1.3950.014085
S1104V1104LGtaTta22B.1.5510.002581
S1104V1104LGtaTta12B.1.5610.000397
S1104V1104LGtaCta12B.1.5610.000397
S1104V1104LGtaTta22B.1.5740.004301
S1104V1104LGtaTta22B.1.6280.000705
S1104V1104LGtaTta22B.1.80.003945
S1104V1104LGtaTta22D.20.00015
S1104V1104LGtaTta22Q.40.00091
S1104V1104LGtaCta11A.10.000282
S1104V1104LGtaTta11A.190.009434
S1104V1104LGtaTta11A.20.000662
S1104V1104LGtaTta11A.210.00277
S1104V1104LGtaTta11A.270.001656
S1104V1104LGtaCta11AY.150.002222
S1104V1104LGtaTta11AY.16.10.00047
S1104V1104LGtaTta11AY.240.000431
S1104V1104LGtaTta11AY.270.000065
S1104V1104LGtaTta11AY.280.00189
S1104V1104LGtaTta11AY.29.10.000221
S1104V1104LGtaTta11AY.34.10.00051
S1104V1104LGtaTta11AY.400.000964
S1104V1104LGtaTta11AY.410.000294
S1104V1104LGtaTta11AY.5.10.003759
S1104V1104LGtaTta11AY.520.000814
S1104V1104LGtaTta11AY.620.000436
S1104V1104LGtaTta11AY.70.000196
S1104V1104LGtaTta11AY.7.10.000113
S1104V1104LGtaTta11AY.700.000209
S1104V1104LGtaTta11AY.760.004831
S1104V1104LGtaTta11AY.960.002075
S1104V1104LGtaTta11AY.970.001701
S1104V1104LGtaTta11AZ.20.000821
S1104V1104LGtaTta11B.1.1.1210.002427
S1104V1104LGtaTta11B.1.1.1700.001247
S1104V1104LGtaTta11B.1.1.2050.003717
S1104V1104LGtaTta11B.1.1.2140.000055
S1104V1104LGtaTta11B.1.1.2310.003096
S1104V1104LGtaTta11B.1.1.2410.00207
S1104V1104LGtaTta11B.1.1.250.000569
S1104V1104LGtaTta11B.1.1.2540.011236
S1104V1104LGtaTta11B.1.1.3180.000302
S1104V1104LGtaTta11B.1.1.3240.052632
S1104V1104LGtaTta11B.1.1.3490.010309
S1104V1104LGtaCta11B.1.1.3630.005988
S1104V1104LGtaTta11B.1.1.3690.000446
S1104V1104LGtaTta11B.1.1.4660.008696
S1104V1104LGtaTta11B.1.1.4860.001577
S1104V1104LGtaTta11B.1.1.5260.003546
S1104V1104LGtaTta11B.1.1.5280.004808
S1104V1104LGtaTta11B.1.1.700.000341
S1104V1104LGtaTta11B.1.1.830.00271
S1104V1104LGtaTta11B.1.1340.005464
S1104V1104LGtaTta11B.1.1470.000756
S1104V1104LGtaCta11B.1.160.140.002119
S1104V1104LGtaTta11B.1.160.250.011111
S1104V1104LGtaTta11B.1.160.280.002924
S1104V1104LGtaTta11B.1.160.290.004219
S1104V1104LGtaTta11B.1.177.100.000878
S1104V1104LGtaTta11B.1.177.150.000631
S1104V1104LGtaTta11B.1.177.180.00116
S1104V1104LGtaTta11B.1.177.230.003236
S1104V1104LGtaTta11B.1.177.310.011494
S1104V1104LGtaCta11B.1.177.350.000691
S1104V1104LGtaTta11B.1.177.630.002703
S1104V1104LGtaTta11B.1.177.70.000165
S1104V1104LGtaTta11B.1.177.730.000566
S1104V1104LGtaTta11B.1.177.770.000726
S1104V1104LGtaTta11B.1.1780.02381
S1104V1104LGtaTta11B.1.2210.000071
S1104V1104LGtaTta11B.1.2230.002778
S1104V1104LGtaTta11B.1.2340.000132
S1104V1104LGtaTta11B.1.2390.001221
S1104V1104LGtaTta11B.1.258.110.000396
S1104V1104LGtaTta11B.1.2790.000514
S1104V1104LGtaTta11B.1.3290.000608
S1104V1104LGtaTta11B.1.3360.002439
S1104V1104LGtaTta11B.1.351.20.000303
S1104V1104LGtaTta11B.1.36.10.00114
S1104V1104LGtaTta11B.1.36.290.000517
S1104V1104LGtaTta11B.1.36.80.001
S1104V1104LGtaTta11B.1.3890.001002
S1104V1104LGtaTta11B.1.4250.002994
S1104V1104LGtaTta11B.1.4380.006536
S1104V1104LGtaTta11B.1.4590.004082
S1104V1104LGtaTta11B.1.4680.005714
S1104V1104LGtaTta11B.1.4700.001404
S1104V1104LGtaTta11B.1.4970.000315
S1104V1104LGtaTta11B.1.5170.000427
S1104V1104LGtaTta11B.1.5240.001406
S1104V1104LGtaTta11B.1.5380.008065
S1104V1104LGtaTta11B.1.5970.00463
S1104V1104LGtaTta11B.1.6190.000871
S1104V1104LGtaTta11B.1.6230.000536
S1104V1104LGtaTta11B.1.6300.005236
S1104V1104LGtaTta11B.1.840.020833
S1104V1104LGtaTta11B.60.00091
S1104V1104LGtaTta11C.390.018868
S1104V1104LGtaTta11N.30.005814
S1104V1104LGtaTta11P.1.10.000318
S1104V1104LGtaTta11P.1.100.000269
S1104V1104LGtaTta11P.1.70.000319
S1104V1104LGtaTta11P.30.001595
S1104V1104LGtaTta11P.60.003145
S1104V1104LGtaTta11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.