CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V1104A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1104V1104AnonsyngTagCa36340.94444424872-24874
S1104V1104AnonsyngTAgCC3610.027777824872-24874
S1104V1104AnonsyngTAgCG3610.027777824872-24874

Details of the mutation V1104A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1104V1104AgTagCa3436All0.000007
S1104V1104AgTAgCC136All0
S1104V1104AgTAgCG136All0
S1104V1104AgTagCa88B.1.1.70.000007
S1104V1104AgTagCa77AY.39.10.000277
S1104V1104AgTagCa33AY.40.000005
S1104V1104AgTagCa33B.1.1770.00004
S1104V1104AgTAgCC120.055556
S1104V1104AgTagCa120.055556
S1104V1104AgTagCa22AY.1190.000071
S1104V1104AgTagCa22AY.430.000009
S1104V1104AgTagCa11AY.1030.000006
S1104V1104AgTagCa11AY.440.000006
S1104V1104AgTAgCG11AY.670.000464
S1104V1104AgTagCa11B.1.160.200.008929
S1104V1104AgTagCa11B.1.177.40.000211
S1104V1104AgTagCa11B.1.3110.000275
S1104V1104AgTagCa11B.1.3960.000706
S1104V1104AgTagCa11B.1.617.10.000129
S1104V1104AgTagCa11B.1.617.20.000004

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.