CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V1094V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1094V1094VsyngtCgtT227118560.81726124842-24844
S1094V1094VsyngtCgtA22714110.18097824842-24844
S1094V1094VsyngtCgtG227140.0017613424842-24844

Details of the mutation V1094V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1094V1094VgtCgtT18562271All0.000355
S1094V1094VgtCgtA4112271All0.000079
S1094V1094VgtCgtG42271All0.000001
S1094V1094VgtCgtA266397AY.40.000414
S1094V1094VgtCgtT130397AY.40.000202
S1094V1094VgtCgtG1397AY.40.000002
S1094V1094VgtCgtT200201B.1.617.20.000753
S1094V1094VgtCgtA1201B.1.617.20.000004
S1094V1094VgtCgtT187195B.1.1.70.000167
S1094V1094VgtCgtA5195B.1.1.70.000004
S1094V1094VgtCgtG3195B.1.1.70.000003
S1094V1094VgtCgtT136136AY.430.000603
S1094V1094VgtCgtA109109B.1.1.2270.473913
S1094V1094VgtCgtT9595AY.98.10.004601
S1094V1094VgtCgtT8787AY.9.20.003195
S1094V1094VgtCgtT7474AY.1030.000459
S1094V1094VgtCgtT5050B.1.1770.000658
S1094V1094VgtCgtT5050B.1.258.150.943396
S1094V1094VgtCgtT4548AY.1000.00207
S1094V1094VgtCgtA348AY.1000.000138
S1094V1094VgtCgtT4545B.1.177.810.00852
S1094V1094VgtCgtT4141AY.440.00025
S1094V1094VgtCgtT3940AY.30.000388
S1094V1094VgtCgtA140AY.30.00001
S1094V1094VgtCgtT3434B.1.2430.002366
S1094V1094VgtCgtT3333B.1.20.000291
S1094V1094VgtCgtT2830AY.1020.000742
S1094V1094VgtCgtA230AY.1020.000053
S1094V1094VgtCgtT2628B.10.000238
S1094V1094VgtCgtA228B.10.000018
S1094V1094VgtCgtT2223AY.1180.001378
S1094V1094VgtCgtA123AY.1180.000063
S1094V1094VgtCgtT2323AY.250.000138
S1094V1094VgtCgtT2222B.1.177.20.1
S1094V1094VgtCgtT2222B.1.5250.00249
S1094V1094VgtCgtT1920AY.390.00047
S1094V1094VgtCgtA120AY.390.000025
S1094V1094VgtCgtT1919B.1.3690.005419
S1094V1094VgtCgtT1819P.10.000284
S1094V1094VgtCgtA119P.10.000016
S1094V1094VgtCgtT1717B.1.10.000308
S1094V1094VgtCgtT1616B.1.177.620.01907
S1094V1094VgtCgtT1414AY.1190.000494
S1094V1094VgtCgtT1414P.1.140.000669
S1094V1094VgtCgtT1313A.23.10.009155
S1094V1094VgtCgtT1212AY.290.000189
S1094V1094VgtCgtT1212B.1.2210.000852
S1094V1094VgtCgtT1012B.1.258.170.00104
S1094V1094VgtCgtA212B.1.258.170.000208
S1094V1094VgtCgtT1212B.1.4290.000282
S1094V1094VgtCgtT1111B.1.5260.000259
S1094V1094VgtCgtT1010B.1.1.2220.00204
S1094V1094VgtCgtT1010B.1.2580.000665
S1094V1094VgtCgtT89AY.50.000165
S1094V1094VgtCgtA19AY.50.000021
S1094V1094VgtCgtT88B.1.9.50.045455
S1094V1094VgtCgtT67AY.1170.000507
S1094V1094VgtCgtA17AY.1170.000085
S1094V1094VgtCgtT77AY.200.000272
S1094V1094VgtCgtT77AY.650.003731
S1094V1094VgtCgtT66AY.300.002374
S1094V1094VgtCgtT66AY.4.2.10.000894
S1094V1094VgtCgtT66AY.920.001724
S1094V1094VgtCgtT66B.1.1.2840.000644
S1094V1094VgtCgtT66B.1.1.5190.000238
S1094V1094VgtCgtT66N.50.010601
S1094V1094VgtCgtT45AY.1200.000149
S1094V1094VgtCgtA15AY.1200.000037
S1094V1094VgtCgtT55AY.260.000142
S1094V1094VgtCgtT55AY.90.000338
S1094V1094VgtCgtT55B.1.2400.001078
S1094V1094VgtCgtT55B.1.4200.052083
S1094V1094VgtCgtT55B.1.617.10.000645
S1094V1094VgtCgtA55P.1.40.004883
S1094V1094VgtCgtT44AY.34.10.00204
S1094V1094VgtCgtT34AY.4.20.000065
S1094V1094VgtCgtA14AY.4.20.000022
S1094V1094VgtCgtT44B.1.1600.000125
S1094V1094VgtCgtT44B.1.177.870.002911
S1094V1094VgtCgtT44B.1.6090.001918
S1094V1094VgtCgtT44C.370.000464
S1094V1094VgtCgtT33AY.10.001187
S1094V1094VgtCgtT33AY.130.000483
S1094V1094VgtCgtT33AY.140.000264
S1094V1094VgtCgtT23AY.230.000139
S1094V1094VgtCgtA13AY.230.00007
S1094V1094VgtCgtT33AY.3.10.000256
S1094V1094VgtCgtT23AY.39.10.000079
S1094V1094VgtCgtA13AY.39.10.00004
S1094V1094VgtCgtT33AY.5.40.00083
S1094V1094VgtCgtT33AY.840.001312
S1094V1094VgtCgtT33B.1.177.570.000843
S1094V1094VgtCgtT23B.1.4000.000858
S1094V1094VgtCgtA13B.1.4000.000429
S1094V1094VgtCgtT33B.1.5760.00272
S1094V1094VgtCgtT22AY.340.000194
S1094V1094VgtCgtT22AY.450.000243
S1094V1094VgtCgtT22AY.46.20.001271
S1094V1094VgtCgtT22AY.610.00021
S1094V1094VgtCgtT22AY.99.20.000184
S1094V1094VgtCgtT22B.1.1.2140.000111
S1094V1094VgtCgtT22B.1.1.280.000622
S1094V1094VgtCgtT22B.1.1.3370.007194
S1094V1094VgtCgtT22B.1.177.860.000367
S1094V1094VgtCgtT22B.1.3490.00143
S1094V1094VgtCgtT22B.1.3510.000059
S1094V1094VgtCgtT22B.1.36.290.001035
S1094V1094VgtCgtT22B.1.4270.000101
S1094V1094VgtCgtT22B.1.466.20.000782
S1094V1094VgtCgtT22B.1.4970.00063
S1094V1094VgtCgtT22B.1.5960.000174
S1094V1094VgtCgtT22B.30.001661
S1094V1094VgtCgtT22P.1.150.000465
S1094V1094VgtCgtT22P.1.70.000639
S1094V1094VgtCgtT22Q.80.00033
S1094V1094VgtCgtT110.055556
S1094V1094VgtCgtT11A.190.009434
S1094V1094VgtCgtT11A.2.40.003367
S1094V1094VgtCgtT11A.2.50.000499
S1094V1094VgtCgtA11AY.100.00053
S1094V1094VgtCgtT11AY.1100.000113
S1094V1094VgtCgtT11AY.1110.000183
S1094V1094VgtCgtT11AY.1140.000231
S1094V1094VgtCgtT11AY.1160.000287
S1094V1094VgtCgtT11AY.120.20.001285
S1094V1094VgtCgtT11AY.16.10.00047
S1094V1094VgtCgtT11AY.240.000431
S1094V1094VgtCgtT11AY.330.000067
S1094V1094VgtCgtT11AY.350.000233
S1094V1094VgtCgtT11AY.4.50.000107
S1094V1094VgtCgtT11AY.420.00004
S1094V1094VgtCgtT11AY.460.000104
S1094V1094VgtCgtT11AY.470.000031
S1094V1094VgtCgtT11AY.510.000909
S1094V1094VgtCgtT11AY.540.000095
S1094V1094VgtCgtT11AY.550.000917
S1094V1094VgtCgtT11AY.690.000187
S1094V1094VgtCgtT11AY.700.000209
S1094V1094VgtCgtT11AY.750.000056
S1094V1094VgtCgtT11AY.790.001211
S1094V1094VgtCgtT11AY.850.000427
S1094V1094VgtCgtA11AY.880.000884
S1094V1094VgtCgtT11AY.9.10.000084
S1094V1094VgtCgtT11AY.930.000273
S1094V1094VgtCgtT11B0.000128
S1094V1094VgtCgtT11B.1.1.1410.002012
S1094V1094VgtCgtT11B.1.1.1760.000439
S1094V1094VgtCgtT11B.1.1.2070.001182
S1094V1094VgtCgtT11B.1.1.2160.00089
S1094V1094VgtCgtT11B.1.1.2200.001859
S1094V1094VgtCgtT11B.1.1.2770.000759
S1094V1094VgtCgtA11B.1.1.3480.000796
S1094V1094VgtCgtT11B.1.1.3670.055556
S1094V1094VgtCgtT11B.1.1.4040.015873
S1094V1094VgtCgtT11B.1.1.430.014925
S1094V1094VgtCgtT11B.1.1.4480.002033
S1094V1094VgtCgtT11B.1.1.5260.003546
S1094V1094VgtCgtT11B.1.1.630.000386
S1094V1094VgtCgtT11B.1.1110.001175
S1094V1094VgtCgtT11B.1.177.40.000211
S1094V1094VgtCgtA11B.1.1820.007246
S1094V1094VgtCgtT11B.1.258.70.001912
S1094V1094VgtCgtT11B.1.3110.000275
S1094V1094VgtCgtT11B.1.351.20.000303
S1094V1094VgtCgtT11B.1.360.000146
S1094V1094VgtCgtT11B.1.36.180.00042
S1094V1094VgtCgtT11B.1.36.80.001
S1094V1094VgtCgtT11B.1.3670.000792
S1094V1094VgtCgtT11B.1.3960.000706
S1094V1094VgtCgtT11B.1.3990.001934
S1094V1094VgtCgtT11B.1.4340.052632
S1094V1094VgtCgtA11B.1.438.10.000107
S1094V1094VgtCgtT11B.1.4710.002732
S1094V1094VgtCgtT11B.1.5170.000427
S1094V1094VgtCgtT11B.1.5490.007194
S1094V1094VgtCgtT11B.1.5820.000491
S1094V1094VgtCgtT11B.1.6210.000089
S1094V1094VgtCgtT11B.1.6300.005236
S1094V1094VgtCgtT11B.1.6310.003367
S1094V1094VgtCgtT11B.1.6370.000073
S1094V1094VgtCgtT11B.6.30.026316
S1094V1094VgtCgtT11C.160.00106
S1094V1094VgtCgtT11D.20.000075
S1094V1094VgtCgtT11P.1.60.001946
S1094V1094VgtCgtT11P.20.000187
S1094V1094VgtCgtT11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.