CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V1065V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1065V1065VsyngtGgtT535549400.92250224755-24757
S1065V1065VsyngtGgtC53552840.053034524755-24757
S1065V1065VsyngtGgtA53551310.024463124755-24757

Details of the mutation V1065V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1065V1065VgtGgtT49405355All0.000945
S1065V1065VgtGgtC2845355All0.000054
S1065V1065VgtGgtA1315355All0.000025
S1065V1065VgtGgtT11111145AY.40.001729
S1065V1065VgtGgtA331145AY.40.000051
S1065V1065VgtGgtC11145AY.40.000002
S1065V1065VgtGgtT11311131B.1.177.820.539857
S1065V1065VgtGgtT670815B.1.1.70.0006
S1065V1065VgtGgtC139815B.1.1.70.000124
S1065V1065VgtGgtA6815B.1.1.70.000005
S1065V1065VgtGgtT147154B.1.617.20.000554
S1065V1065VgtGgtA5154B.1.617.20.000019
S1065V1065VgtGgtC2154B.1.617.20.000008
S1065V1065VgtGgtT147148AY.440.000895
S1065V1065VgtGgtC1148AY.440.000006
S1065V1065VgtGgtT127128B.1.1.5190.005043
S1065V1065VgtGgtA1128B.1.1.5190.00004
S1065V1065VgtGgtC9294B.1.258.170.009565
S1065V1065VgtGgtT294B.1.258.170.000208
S1065V1065VgtGgtT7986P.10.001245
S1065V1065VgtGgtC586P.10.000079
S1065V1065VgtGgtA286P.10.000032
S1065V1065VgtGgtT7474B.1.6220.961039
S1065V1065VgtGgtT6473AY.250.000385
S1065V1065VgtGgtA973AY.250.000054
S1065V1065VgtGgtT7373AY.60.003002
S1065V1065VgtGgtT6870B.1.10.001234
S1065V1065VgtGgtA170B.1.10.000018
S1065V1065VgtGgtC170B.1.10.000018
S1065V1065VgtGgtT6768B.1.4290.001576
S1065V1065VgtGgtA168B.1.4290.000024
S1065V1065VgtGgtT6566AY.1030.000404
S1065V1065VgtGgtA166AY.1030.000006
S1065V1065VgtGgtT6464AY.90.004326
S1065V1065VgtGgtT5660AY.430.000248
S1065V1065VgtGgtC360AY.430.000013
S1065V1065VgtGgtA160AY.430.000004
S1065V1065VgtGgtT5155B.10.000467
S1065V1065VgtGgtC255B.10.000018
S1065V1065VgtGgtA255B.10.000018
S1065V1065VgtGgtT4444AY.290.000694
S1065V1065VgtGgtT4343B.1.4270.002171
S1065V1065VgtGgtT4242B.1.258.231
S1065V1065VgtGgtT3741B.1.1770.000487
S1065V1065VgtGgtC341B.1.1770.00004
S1065V1065VgtGgtA141B.1.1770.000013
S1065V1065VgtGgtT3939B.1.5880.035487
S1065V1065VgtGgtT1833B.1.20.000158
S1065V1065VgtGgtA1433B.1.20.000123
S1065V1065VgtGgtC133B.1.20.000009
S1065V1065VgtGgtT3030AY.1020.000795
S1065V1065VgtGgtC1428B.1.617.10.001806
S1065V1065VgtGgtT1428B.1.617.10.001806
S1065V1065VgtGgtT2626B.1.1700.112069
S1065V1065VgtGgtT2626B.1.3510.000773
S1065V1065VgtGgtT2424AY.390.000593
S1065V1065VgtGgtT2224B.1.2580.001464
S1065V1065VgtGgtC224B.1.2580.000133
S1065V1065VgtGgtT2222AY.260.000623
S1065V1065VgtGgtT2222P.1.120.010649
S1065V1065VgtGgtA1521AY.39.10.000594
S1065V1065VgtGgtT621AY.39.10.000238
S1065V1065VgtGgtT2121AY.510.019091
S1065V1065VgtGgtT2121B.1.177.350.014513
S1065V1065VgtGgtT2121C.36.30.011912
S1065V1065VgtGgtA1319AY.200.000505
S1065V1065VgtGgtT619AY.200.000233
S1065V1065VgtGgtC918B.1.2430.000626
S1065V1065VgtGgtT918B.1.2430.000626
S1065V1065VgtGgtT1618B.1.5260.000376
S1065V1065VgtGgtA218B.1.5260.000047
S1065V1065VgtGgtT1415B.1.1600.000437
S1065V1065VgtGgtA115B.1.1600.000031
S1065V1065VgtGgtT1515C.370.001741
S1065V1065VgtGgtT1313AY.1170.001099
S1065V1065VgtGgtT1213AY.1190.000424
S1065V1065VgtGgtA113AY.1190.000035
S1065V1065VgtGgtT1313AY.610.001362
S1065V1065VgtGgtT1213AY.700.002502
S1065V1065VgtGgtA113AY.700.000209
S1065V1065VgtGgtT1313B.1.1.330.005471
S1065V1065VgtGgtT1111AY.4.20.000239
S1065V1065VgtGgtT1010AY.1000.00046
S1065V1065VgtGgtT99Q.30.001305
S1065V1065VgtGgtT88AY.130.001288
S1065V1065VgtGgtT78AY.30.00007
S1065V1065VgtGgtC18AY.30.00001
S1065V1065VgtGgtT88B.1.1.500.005431
S1065V1065VgtGgtT88B.1.1.5230.0125
S1065V1065VgtGgtT77AY.1060.002344
S1065V1065VgtGgtA67AY.140.000528
S1065V1065VgtGgtT17AY.140.000088
S1065V1065VgtGgtT77B.1.1.3060.003069
S1065V1065VgtGgtT77B.1.36.380.011494
S1065V1065VgtGgtT77Q.10.000884
S1065V1065VgtGgtT56AY.420.000201
S1065V1065VgtGgtC16AY.420.00004
S1065V1065VgtGgtT66AY.470.000187
S1065V1065VgtGgtA55AY.3.10.000426
S1065V1065VgtGgtT35AY.50.000062
S1065V1065VgtGgtC25AY.50.000041
S1065V1065VgtGgtT55AY.98.10.000242
S1065V1065VgtGgtT55B.1.360.00073
S1065V1065VgtGgtT44AY.1090.002959
S1065V1065VgtGgtT44AY.230.000279
S1065V1065VgtGgtT44AY.460.000416
S1065V1065VgtGgtA44AY.500.003197
S1065V1065VgtGgtT44AY.75.10.000721
S1065V1065VgtGgtT44AY.980.000316
S1065V1065VgtGgtT44B.1.1.390.002039
S1065V1065VgtGgtT44B.1.258.140.003922
S1065V1065VgtGgtT44B.1.5750.001214
S1065V1065VgtGgtT44P.1.140.000191
S1065V1065VgtGgtT33AM.20.333333
S1065V1065VgtGgtT23AY.1200.000074
S1065V1065VgtGgtC13AY.1200.000037
S1065V1065VgtGgtT33AY.1210.000406
S1065V1065VgtGgtT33AY.370.000948
S1065V1065VgtGgtT33AY.5.40.00083
S1065V1065VgtGgtT33AY.9.20.00011
S1065V1065VgtGgtT33AY.920.000862
S1065V1065VgtGgtT33AY.99.20.000276
S1065V1065VgtGgtT33B0.000383
S1065V1065VgtGgtT33B.1.1.1530.003286
S1065V1065VgtGgtT33B.1.1.3170.001235
S1065V1065VgtGgtT33B.1.1.3720.002066
S1065V1065VgtGgtT33B.1.160.320.012876
S1065V1065VgtGgtT33B.1.177.460.002755
S1065V1065VgtGgtT33B.1.2010.017045
S1065V1065VgtGgtT33B.1.214.20.001799
S1065V1065VgtGgtT33B.1.36.10.003421
S1065V1065VgtGgtT33B.1.4650.011407
S1065V1065VgtGgtT33B.1.466.20.001174
S1065V1065VgtGgtT33B.1.5380.024194
S1065V1065VgtGgtT33B.1.5960.000261
S1065V1065VgtGgtT33B.1.6210.000266
S1065V1065VgtGgtT33C.360.002732
S1065V1065VgtGgtT33P.1.70.000958
S1065V1065VgtGgtT22A.2.50.000998
S1065V1065VgtGgtT22AU.10.002532
S1065V1065VgtGgtT22AY.116.10.000623
S1065V1065VgtGgtT22AY.160.000759
S1065V1065VgtGgtA12AY.16.10.00047
S1065V1065VgtGgtT12AY.16.10.00047
S1065V1065VgtGgtT22AY.240.000862
S1065V1065VgtGgtT22AY.280.003781
S1065V1065VgtGgtT22AY.330.000134
S1065V1065VgtGgtT22AY.360.000296
S1065V1065VgtGgtT22AY.410.000588
S1065V1065VgtGgtT22AY.46.40.000329
S1065V1065VgtGgtT22AY.46.60.000144
S1065V1065VgtGgtT22AY.570.001312
S1065V1065VgtGgtT22AY.690.000373
S1065V1065VgtGgtT22AY.740.000231
S1065V1065VgtGgtT22AY.990.002099
S1065V1065VgtGgtT22B.1.1.2220.000408
S1065V1065VgtGgtT22B.1.1.3910.017094
S1065V1065VgtGgtT22B.1.1100.00905
S1065V1065VgtGgtT22B.1.1470.001512
S1065V1065VgtGgtT22B.1.177.520.003515
S1065V1065VgtGgtA12B.1.177.600.000218
S1065V1065VgtGgtT12B.1.177.600.000218
S1065V1065VgtGgtT22B.1.36.290.001035
S1065V1065VgtGgtT22B.1.36.360.001204
S1065V1065VgtGgtT22B.1.4660.046512
S1065V1065VgtGgtT22B.1.4690.00722
S1065V1065VgtGgtT22B.1.575.10.004878
S1065V1065VgtGgtT22B.1.5950.000522
S1065V1065VgtGgtC22B.3.10.003317
S1065V1065VgtGgtT22P.20.000373
S1065V1065VgtGgtT22Q.80.00033
S1065V1065VgtGgtT11A0.000387
S1065V1065VgtGgtT11A.190.009434
S1065V1065VgtGgtA11A.23.10.000704
S1065V1065VgtGgtT11AY.100.00053
S1065V1065VgtGgtT11AY.1050.000643
S1065V1065VgtGgtT11AY.1070.000466
S1065V1065VgtGgtT11AY.1140.000231
S1065V1065VgtGgtT11AY.1160.000287
S1065V1065VgtGgtT11AY.120.10.000321
S1065V1065VgtGgtT11AY.220.002092
S1065V1065VgtGgtT11AY.270.000065
S1065V1065VgtGgtT11AY.34.10.00051
S1065V1065VgtGgtT11AY.350.000233
S1065V1065VgtGgtT11AY.39.1.10.000725
S1065V1065VgtGgtT11AY.4.40.000409
S1065V1065VgtGgtT11AY.450.000122
S1065V1065VgtGgtT11AY.480.000465
S1065V1065VgtGgtC11AY.520.000814
S1065V1065VgtGgtA11AY.620.000436
S1065V1065VgtGgtT11AY.710.000475
S1065V1065VgtGgtT11AY.780.001541
S1065V1065VgtGgtT11AY.870.000833
S1065V1065VgtGgtT11AY.9.10.000084
S1065V1065VgtGgtT11AY.900.000684
S1065V1065VgtGgtT11B.1.1.1710.003676
S1065V1065VgtGgtT11B.1.1.2170.003636
S1065V1065VgtGgtA11B.1.1.280.000311
S1065V1065VgtGgtT11B.1.1.2840.000107
S1065V1065VgtGgtT11B.1.1.3110.000358
S1065V1065VgtGgtT11B.1.1.3180.000302
S1065V1065VgtGgtT11B.1.1.3480.000796
S1065V1065VgtGgtT11B.1.1.4060.006494
S1065V1065VgtGgtT11B.1.1.4190.007407
S1065V1065VgtGgtT11B.1.1310.008772
S1065V1065VgtGgtT11B.1.160.80.001289
S1065V1065VgtGgtT11B.1.177.150.000631
S1065V1065VgtGgtT11B.1.177.510.004566
S1065V1065VgtGgtT11B.1.177.530.002392
S1065V1065VgtGgtT11B.1.177.860.000183
S1065V1065VgtGgtT11B.1.177.90.001332
S1065V1065VgtGgtT11B.1.2210.000071
S1065V1065VgtGgtT11B.1.2400.000216
S1065V1065VgtGgtT11B.1.2800.007143
S1065V1065VgtGgtT11B.1.36.390.002217
S1065V1065VgtGgtT11B.1.3670.000792
S1065V1065VgtGgtT11B.1.3960.000706
S1065V1065VgtGgtT11B.1.3990.001934
S1065V1065VgtGgtC11B.1.4060.006061
S1065V1065VgtGgtT11B.1.4110.003704
S1065V1065VgtGgtT11B.1.4180.015873
S1065V1065VgtGgtT11B.1.4260.001009
S1065V1065VgtGgtT11B.1.438.10.000107
S1065V1065VgtGgtT11B.1.4410.009615
S1065V1065VgtGgtT11B.1.4450.011765
S1065V1065VgtGgtT11B.1.4590.004082
S1065V1065VgtGgtT11B.1.517.10.005263
S1065V1065VgtGgtT11B.1.5250.000113
S1065V1065VgtGgtT11B.1.5800.004065
S1065V1065VgtGgtT11B.1.5820.000491
S1065V1065VgtGgtT11B.1.6090.000479
S1065V1065VgtGgtT11B.1.6230.000536
S1065V1065VgtGgtT11B.1.6250.002353
S1065V1065VgtGgtT11B.1.6320.006711
S1065V1065VgtGgtT11B.280.003279
S1065V1065VgtGgtT11B.400.000364
S1065V1065VgtGgtT11D.20.000075
S1065V1065VgtGgtT11N.60.007092
S1065V1065VgtGgtT11P.1.100.000269
S1065V1065VgtGgtT11P.1.130.000898
S1065V1065VgtGgtA11P.1.17.10.000875

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.