CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V1061V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1061V1061VsyngtCgtT17154170410.99341324743-24745
S1061V1061VsyngtCgtA17154970.0056546624743-24745
S1061V1061VsyngtCgtG17154160.00093272724743-24745

Details of the mutation V1061V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1061V1061VgtCgtT1704117154All0.003259
S1061V1061VgtCgtA9717154All0.000019
S1061V1061VgtCgtG1617154All0.000003
S1061V1061VgtCgtT1045010453B.1.617.20.039349
S1061V1061VgtCgtA310453B.1.617.20.000011
S1061V1061VgtCgtT24542454AY.300.971112
S1061V1061VgtCgtT846846AY.400.815815
S1061V1061VgtCgtT375445B.1.1.70.000336
S1061V1061VgtCgtA68445B.1.1.70.000061
S1061V1061VgtCgtG2445B.1.1.70.000002
S1061V1061VgtCgtT396396A.23.10.278873
S1061V1061VgtCgtT249253AY.40.000388
S1061V1061VgtCgtA4253AY.40.000006
S1061V1061VgtCgtT210214B.10.001923
S1061V1061VgtCgtA4214B.10.000037
S1061V1061VgtCgtT202202B.1.5260.004748
S1061V1061VgtCgtT143143AY.16.10.067199
S1061V1061VgtCgtT138139AY.430.000611
S1061V1061VgtCgtA1139AY.430.000004
S1061V1061VgtCgtT9696AY.680.02628
S1061V1061VgtCgtT9595AY.50.001962
S1061V1061VgtCgtT7878AY.390.001927
S1061V1061VgtCgtT6666AY.670.030641
S1061V1061VgtCgtT5259AY.440.000317
S1061V1061VgtCgtG759AY.440.000043
S1061V1061VgtCgtT5455AY.250.000325
S1061V1061VgtCgtG155AY.250.000006
S1061V1061VgtCgtT5252AY.9.20.00191
S1061V1061VgtCgtT4949AY.750.002745
S1061V1061VgtCgtT4747AY.310.87037
S1061V1061VgtCgtT4747AY.650.025053
S1061V1061VgtCgtT4343AY.130.006922
S1061V1061VgtCgtT4242AY.590.022246
S1061V1061VgtCgtT3940B0.004985
S1061V1061VgtCgtA140B0.000128
S1061V1061VgtCgtT3535AY.560.05618
S1061V1061VgtCgtT2929AY.490.092652
S1061V1061VgtCgtT2529B.1.20.00022
S1061V1061VgtCgtA429B.1.20.000035
S1061V1061VgtCgtT2828AY.75.10.005049
S1061V1061VgtCgtT2224AY.1030.000137
S1061V1061VgtCgtA224AY.1030.000012
S1061V1061VgtCgtT2323AY.540.002193
S1061V1061VgtCgtT2121AY.1020.000557
S1061V1061VgtCgtT1919AY.39.10.000753
S1061V1061VgtCgtT1818B.1.5090.015584
S1061V1061VgtCgtT1717AY.1170.001437
S1061V1061VgtCgtT1717AY.450.002069
S1061V1061VgtCgtT1616AY.520.013029
S1061V1061VgtCgtT1616AY.550.014679
S1061V1061VgtCgtT1215B.1.4290.000282
S1061V1061VgtCgtG215B.1.4290.000047
S1061V1061VgtCgtA115B.1.4290.000024
S1061V1061VgtCgtT1515D.20.001126
S1061V1061VgtCgtT1414AY.470.000435
S1061V1061VgtCgtT1313AY.260.000368
S1061V1061VgtCgtT1313AY.30.000129
S1061V1061VgtCgtT1313AY.370.004109
S1061V1061VgtCgtT1313AY.410.003821
S1061V1061VgtCgtT1313AY.580.011797
S1061V1061VgtCgtT1313AY.610.001362
S1061V1061VgtCgtT1313P.10.000205
S1061V1061VgtCgtT1212AY.210.02277
S1061V1061VgtCgtT1212AY.620.005229
S1061V1061VgtCgtT1212B.1.617.10.001548
S1061V1061VgtCgtT1111AY.160.004176
S1061V1061VgtCgtT1111B.1.1.2220.002244
S1061V1061VgtCgtT810AY.330.000534
S1061V1061VgtCgtG210AY.330.000134
S1061V1061VgtCgtT1010AY.860.008299
S1061V1061VgtCgtT1010C.370.001161
S1061V1061VgtCgtT99AY.240.003879
S1061V1061VgtCgtT88AY.420.000322
S1061V1061VgtCgtT88AY.510.007273
S1061V1061VgtCgtT88AY.640.004762
S1061V1061VgtCgtT88AY.90.000541
S1061V1061VgtCgtT88B.1.1.5190.000318
S1061V1061VgtCgtT77AY.190.007982
S1061V1061VgtCgtT77AY.480.003256
S1061V1061VgtCgtT77AY.530.002013
S1061V1061VgtCgtT77B.1.10.000127
S1061V1061VgtCgtT66AY.1210.000812
S1061V1061VgtCgtT66AY.230.000418
S1061V1061VgtCgtT66AY.5.40.00166
S1061V1061VgtCgtT66B.1.2140.021978
S1061V1061VgtCgtT66B.1.3510.000178
S1061V1061VgtCgtT66B.1.5960.000523
S1061V1061VgtCgtT55AY.280.009452
S1061V1061VgtCgtT55AY.690.000933
S1061V1061VgtCgtT55B.1.110.30.003592
S1061V1061VgtCgtA35B.1.1770.00004
S1061V1061VgtCgtT25B.1.1770.000026
S1061V1061VgtCgtT55B.1.177.210.000382
S1061V1061VgtCgtT55B.1.4280.005102
S1061V1061VgtCgtT44AY.100.00212
S1061V1061VgtCgtT44AY.1130.00057
S1061V1061VgtCgtT44AY.320.00213
S1061V1061VgtCgtT44AY.700.000834
S1061V1061VgtCgtT34AY.730.001996
S1061V1061VgtCgtA14AY.730.000665
S1061V1061VgtCgtT44AY.770.00451
S1061V1061VgtCgtT44AY.950.003044
S1061V1061VgtCgtT44B.1.1.10.001307
S1061V1061VgtCgtT44B.1.6210.000354
S1061V1061VgtCgtT33AY.1000.000138
S1061V1061VgtCgtT33AY.1040.005952
S1061V1061VgtCgtT33AY.1060.001005
S1061V1061VgtCgtT33AY.1100.000338
S1061V1061VgtCgtT33AY.1140.000693
S1061V1061VgtCgtT33AY.140.000264
S1061V1061VgtCgtT33AY.20.001068
S1061V1061VgtCgtT33AY.350.000699
S1061V1061VgtCgtT33AY.380.001498
S1061V1061VgtCgtT33AY.46.50.000595
S1061V1061VgtCgtT33AY.850.001282
S1061V1061VgtCgtT33AY.870.002498
S1061V1061VgtCgtT33AY.880.002653
S1061V1061VgtCgtT33AY.9.10.000251
S1061V1061VgtCgtT33AY.980.000237
S1061V1061VgtCgtT33B.1.1.3170.001235
S1061V1061VgtCgtT33B.1.3110.000824
S1061V1061VgtCgtT33B.1.5990.010949
S1061V1061VgtCgtT33P.20.00056
S1061V1061VgtCgtT22AY.1050.001286
S1061V1061VgtCgtT22AY.1090.001479
S1061V1061VgtCgtT22AY.1180.000125
S1061V1061VgtCgtT22AY.120.000632
S1061V1061VgtCgtT22AY.290.000032
S1061V1061VgtCgtT22AY.4.10.001475
S1061V1061VgtCgtT22AY.460.000208
S1061V1061VgtCgtT22AY.46.60.000144
S1061V1061VgtCgtT22AY.710.00095
S1061V1061VgtCgtT22AY.840.000875
S1061V1061VgtCgtT22B.1.1.1980.002937
S1061V1061VgtCgtA12B.1.1600.000031
S1061V1061VgtCgtT12B.1.1600.000031
S1061V1061VgtCgtT22B.1.177.730.001133
S1061V1061VgtCgtT22B.1.2210.000142
S1061V1061VgtCgtT22B.1.221.30.001667
S1061V1061VgtCgtT22B.1.2430.000139
S1061V1061VgtCgtG12B.1.4270.00005
S1061V1061VgtCgtT12B.1.4270.00005
S1061V1061VgtCgtT22B.1.466.20.000782
S1061V1061VgtCgtT22B.1.6200.001892
S1061V1061VgtCgtT22B.1.621.10.001012
S1061V1061VgtCgtT22B.1.6310.006734
S1061V1061VgtCgtT110.055556
S1061V1061VgtCgtA11A0.000387
S1061V1061VgtCgtT11A.2.50.000499
S1061V1061VgtCgtT11A.270.001656
S1061V1061VgtCgtT11AY.1160.000287
S1061V1061VgtCgtT11AY.200.000039
S1061V1061VgtCgtT11AY.4.20.000022
S1061V1061VgtCgtG11AY.4.50.000107
S1061V1061VgtCgtT11AY.46.20.000635
S1061V1061VgtCgtT11AY.500.000799
S1061V1061VgtCgtT11AY.600.000938
S1061V1061VgtCgtT11AY.630.000387
S1061V1061VgtCgtT11AY.780.001541
S1061V1061VgtCgtT11AY.800.001129
S1061V1061VgtCgtT11AY.830.001724
S1061V1061VgtCgtT11AY.910.00073
S1061V1061VgtCgtT11AY.920.000287
S1061V1061VgtCgtT11AY.98.10.000048
S1061V1061VgtCgtT11AY.99.10.001553
S1061V1061VgtCgtT11B.1.1.2140.000055
S1061V1061VgtCgtT11B.1.1.3060.000438
S1061V1061VgtCgtT11B.1.1.3910.008547
S1061V1061VgtCgtT11B.1.1.460.004367
S1061V1061VgtCgtT11B.1.1.540.003021
S1061V1061VgtCgtT11B.1.1490.003425
S1061V1061VgtCgtT11B.1.1570.002985
S1061V1061VgtCgtT11B.1.160.160.000929
S1061V1061VgtCgtT11B.1.160.310.008065
S1061V1061VgtCgtT11B.1.2060.000816
S1061V1061VgtCgtT11B.1.2340.000132
S1061V1061VgtCgtT11B.1.2400.000216
S1061V1061VgtCgtT11B.1.360.000146
S1061V1061VgtCgtT11B.1.3690.000285
S1061V1061VgtCgtA11B.1.3890.001002
S1061V1061VgtCgtT11B.1.416.10.001563
S1061V1061VgtCgtT11B.1.438.10.000107
S1061V1061VgtCgtT11B.1.4560.003268
S1061V1061VgtCgtT11B.1.4590.004082
S1061V1061VgtCgtT11B.1.4870.019608
S1061V1061VgtCgtA11B.1.5250.000113
S1061V1061VgtCgtT11B.1.5440.006024
S1061V1061VgtCgtT11B.1.5600.00463
S1061V1061VgtCgtT11B.1.5750.000303
S1061V1061VgtCgtT11B.1.617.30.002985
S1061V1061VgtCgtA11B.1.6230.000536
S1061V1061VgtCgtT11B.6.60.000889
S1061V1061VgtCgtT11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.