CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T859T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S859T859TsynacTacC3642240.61538524137-24139
S859T859TsynacTacG364860.23626424137-24139
S859T859TsynacTacA364540.14835224137-24139

Details of the mutation T859T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S859T859TacTacC224364All0.000043
S859T859TacTacG86364All0.000016
S859T859TacTacA54364All0.00001
S859T859TacTacG81100AY.1030.000503
S859T859TacTacC16100AY.1030.000099
S859T859TacTacA3100AY.1030.000019
S859T859TacTacC6060AY.1130.008543
S859T859TacTacC2429AY.40.000037
S859T859TacTacA529AY.40.000008
S859T859TacTacC2828B.1.1770.000369
S859T859TacTacA2525AY.420.001006
S859T859TacTacC1822B.1.1.70.000016
S859T859TacTacA422B.1.1.70.000004
S859T859TacTacC1717AY.430.000075
S859T859TacTacC910AY.250.000054
S859T859TacTacA110AY.250.000006
S859T859TacTacC78B.10.000064
S859T859TacTacA18B.10.000009
S859T859TacTacC66B.1.3510.000178
S859T859TacTacC36B.1.617.20.000011
S859T859TacTacA36B.1.617.20.000011
S859T859TacTacC66P.10.000095
S859T859TacTacA24AY.1020.000053
S859T859TacTacC24AY.1020.000053
S859T859TacTacC44AY.30.00004
S859T859TacTacC44AZ.20.003284
S859T859TacTacC34B.1.20.000026
S859T859TacTacA14B.1.20.000009
S859T859TacTacG33B.1.1.3060.001315
S859T859TacTacA22A.10.000564
S859T859TacTacC22AY.1170.000169
S859T859TacTacC22AY.1200.000074
S859T859TacTacC22AY.390.000049
S859T859TacTacC22AY.9.20.000073
S859T859TacTacA12B.1.466.20.000391
S859T859TacTacC12B.1.466.20.000391
S859T859TacTacC11AY.1190.000035
S859T859TacTacA11AY.290.000016
S859T859TacTacA11AY.440.000006
S859T859TacTacC11AY.550.000917
S859T859TacTacG11AY.7.20.000559
S859T859TacTacA11B.1.1.1860.003436
S859T859TacTacA11B.1.1.2180.007692
S859T859TacTacG11B.1.1.3690.000446
S859T859TacTacC11B.1.177.70.000165
S859T859TacTacA11B.1.362.10.066667
S859T859TacTacC11B.1.3690.000285
S859T859TacTacC11B.1.4220.000812
S859T859TacTacC11B.1.5960.000087
S859T859TacTacA11D.20.000075
S859T859TacTacC11P.1.150.000232
S859T859TacTacC11P.20.000187