CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T859N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S859T859NnonsynaCtaAt24827248180.99963724137-24139
S859T859NnonsynaCTaAC2482790.00036250924137-24139

Details of the mutation T859N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S859T859NaCtaAt2481824827All0.004747
S859T859NaCTaAC924827All0.000002
S859T859NaCtaAt1334113348B.1.6370.974863
S859T859NaCTaAC713348B.1.6370.000512
S859T859NaCtaAt85338535C.370.990367
S859T859NaCTaAC28535C.370.000232
S859T859NaCtaAt548548B.10.005019
S859T859NaCtaAt368368C.37.10.963351
S859T859NaCtaAt307307B.1.36.90.987138
S859T859NaCtaAt251251B.1.617.20.000945
S859T859NaCtaAt212212C.1.20.902128
S859T859NaCtaAt173173B.1.6260.988571
S859T859NaCtaAt140140B.1.10.00254
S859T859NaCtaAt127127B.1.415.10.962121
S859T859NaCtaAt6565AY.1020.001723
S859T859NaCtaAt4949AY.46.60.003538
S859T859NaCtaAt4444B.1.6390.956522
S859T859NaCtaAt4141B.1.1.5240.854167
S859T859NaCtaAt3838AY.430.000168
S859T859NaCtaAt3636C.401
S859T859NaCtaAt3232C.36.3.10.086957
S859T859NaCtaAt2828B.1.214.20.016787
S859T859NaCtaAt2727AY.920.007756
S859T859NaCtaAt2626B.1.5260.000611
S859T859NaCtaAt2222B.1.20.000194
S859T859NaCtaAt2121B.1.5760.019039
S859T859NaCtaAt1919AY.390.00047
S859T859NaCtaAt1717B.1.6330.708333
S859T859NaCtaAt1616B.1.1.70.000014
S859T859NaCtaAt1414P.1.150.003253
S859T859NaCtaAt1212B0.001534
S859T859NaCtaAt1212B.1.6380.631579
S859T859NaCtaAt1111AY.360.00163
S859T859NaCtaAt1111B.1.1.3720.007576
S859T859NaCtaAt1010P.10.000158
S859T859NaCtaAt99AY.1030.000056
S859T859NaCtaAt88AY.440.000049
S859T859NaCtaAt77AY.250.000042
S859T859NaCtaAt77B.1.1.10.002287
S859T859NaCtaAt77B.1.1.280.002179
S859T859NaCtaAt77B.1.177.730.003964
S859T859NaCtaAt77B.1.6320.04698
S859T859NaCtaAt77B.1.6360.04698
S859T859NaCtaAt66B.1.177.70.000989
S859T859NaCtaAt66B.1.5960.000523
S859T859NaCtaAt66B.1.6230.003219
S859T859NaCtaAt55AY.840.002187
S859T859NaCtaAt55B.1.360.00073
S859T859NaCtaAt55P.1.120.00242
S859T859NaCtaAt55P.50.068493
S859T859NaCtaAt44AY.230.000279
S859T859NaCtaAt44AY.30.00004
S859T859NaCtaAt44AY.40.000006
S859T859NaCtaAt44AY.420.000161
S859T859NaCtaAt44AY.9.20.000147
S859T859NaCtaAt44AY.980.000316
S859T859NaCtaAt44B.1.4270.000202
S859T859NaCtaAt44B.1.6180.016129
S859T859NaCtaAt44P.1.10.001271
S859T859NaCtaAt33AY.130.000483
S859T859NaCtaAt33AY.260.000085
S859T859NaCtaAt33AY.450.000365
S859T859NaCtaAt33AY.460.000312
S859T859NaCtaAt33AY.50.000062
S859T859NaCtaAt33B.1.1.4120.022901
S859T859NaCtaAt33B.1.1.5070.026087
S859T859NaCtaAt33B.1.1.5280.014423
S859T859NaCtaAt33B.1.3510.000089
S859T859NaCtaAt33B.1.6090.001438
S859T859NaCtaAt33C.390.056604
S859T859NaCtaAt33P.1.170.000485
S859T859NaCtaAt33Q.80.000495
S859T859NaCtaAt22AY.1080.002205
S859T859NaCtaAt22AY.5.30.000675
S859T859NaCtaAt22AY.520.001629
S859T859NaCtaAt22AY.610.00021
S859T859NaCtaAt22B.1.1.2650.006309
S859T859NaCtaAt22B.1.1.2910.001485
S859T859NaCtaAt22B.1.1.2940.002532
S859T859NaCtaAt22B.1.1.3180.000604
S859T859NaCtaAt22B.1.1.5190.000079
S859T859NaCtaAt22B.1.1600.000062
S859T859NaCtaAt22B.1.1770.000026
S859T859NaCtaAt22B.1.3110.000549
S859T859NaCtaAt22B.1.3360.004878
S859T859NaCtaAt22B.1.36.310.003503
S859T859NaCtaAt22B.1.36.80.002
S859T859NaCtaAt22B.1.4040.002604
S859T859NaCtaAt22B.1.4130.008511
S859T859NaCtaAt22B.1.6210.000177
S859T859NaCtaAt22B.1.9.50.011364
S859T859NaCtaAt22C.10.004785
S859T859NaCtaAt11A.20.000662
S859T859NaCtaAt11A.2.50.000499
S859T859NaCtaAt11AY.1000.000046
S859T859NaCtaAt11AY.1070.000466
S859T859NaCtaAt11AY.1190.000035
S859T859NaCtaAt11AY.1200.000037
S859T859NaCtaAt11AY.150.002222
S859T859NaCtaAt11AY.3.10.000085
S859T859NaCtaAt11AY.300.000396
S859T859NaCtaAt11AY.350.000233
S859T859NaCtaAt11AY.39.10.00004
S859T859NaCtaAt11AY.4.20.000022
S859T859NaCtaAt11AY.550.000917
S859T859NaCtaAt11AY.580.000907
S859T859NaCtaAt11AY.600.000938
S859T859NaCtaAt11AY.990.001049
S859T859NaCtaAt11AY.99.20.000092
S859T859NaCtaAt11B.1.1.2200.001859
S859T859NaCtaAt11B.1.1.2220.000204
S859T859NaCtaAt11B.1.1.3480.000796
S859T859NaCtaAt11B.1.1.4090.002833
S859T859NaCtaAt11B.1.1.4130.006897
S859T859NaCtaAt11B.1.1.4480.002033
S859T859NaCtaAt11B.1.177.440.000519
S859T859NaCtaAt11B.1.177.790.002342
S859T859NaCtaAt11B.1.177.810.000189
S859T859NaCtaAt11B.1.2080.04
S859T859NaCtaAt11B.1.2140.003663
S859T859NaCtaAt11B.1.2210.000071
S859T859NaCtaAt11B.1.2410.000812
S859T859NaCtaAt11B.1.243.10.022222
S859T859NaCtaAt11B.1.2580.000067
S859T859NaCtaAt11B.1.2800.007143
S859T859NaCtaAt11B.1.3240.001605
S859T859NaCtaAt11B.1.3380.008621
S859T859NaCtaAt11B.1.3500.002933
S859T859NaCtaAt11B.1.3560.001727
S859T859NaCtaAt11B.1.36.100.004785
S859T859NaCtaAt11B.1.3670.000792
S859T859NaCtaAt11B.1.3750.00082
S859T859NaCtaAt11B.1.3990.001934
S859T859NaCtaAt11B.1.4110.003704
S859T859NaCtaAt11B.1.4290.000024
S859T859NaCtaAt11B.1.4510.008197
S859T859NaCtaAt11B.1.4620.007246
S859T859NaCtaAt11B.1.5330.009615
S859T859NaCtaAt11B.1.5750.000303
S859T859NaCtaAt11B.1.5820.000491
S859T859NaCtaAt11B.1.617.10.000129
S859T859NaCtaAt11B.1.6280.000352
S859T859NaCtaAt11C.140.004329
S859T859NaCtaAt11C.350.000774
S859T859NaCtaAt11C.40.01
S859T859NaCtaAt11P.1.160.000374
S859T859NaCtaAt11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.