CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T791I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S791T791InonsynaCaaTa813881370.99987723933-23935
S791T791InonsynaCAaTC813810.0001228823933-23935

Details of the mutation T791I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S791T791IaCaaTa81378138All0.001556
S791T791IaCAaTC18138All0
S791T791IaCaaTa29852985AY.120.943426
S791T791IaCaaTa18701870B.1.6370.136646
S791T791IaCaaTa10591059B.1.1.70.000948
S791T791IaCaaTa758758AY.430.003358
S791T791IaCaaTa252252AY.40.000392
S791T791IaCaaTa122122AY.9.20.004481
S791T791IaCaaTa9393AY.440.000566
S791T791IaCaaTa8383P.10.001308
S791T791IaCaaTa5151AY.1030.000317
S791T791IaCaaTa4848B.10.00044
S791T791IaCaaTa4444B.1.617.20.000166
S791T791IaCaaTa4242AY.290.000662
S791T791IaCaaTa3838B.1.3510.00113
S791T791IaCaaTa3232AY.840.013998
S791T791IaCaaTa3232B.1.177.210.002447
S791T791IaCaaTa2525AY.250.00015
S791T791IaCaaTa2324AY.30.000229
S791T791IaCAaTC124AY.30.00001
S791T791IaCaaTa2323B.1.5950.006002
S791T791IaCaaTa2222B.1.438.10.00236
S791T791IaCaaTa1818B.1.1770.000237
S791T791IaCaaTa1717AY.1180.001065
S791T791IaCaaTa1717AY.420.000684
S791T791IaCaaTa1616B.1.177.600.003495
S791T791IaCaaTa1515AY.46.60.001083
S791T791IaCaaTa1515B.1.10.000272
S791T791IaCaaTa1515B.1.20.000132
S791T791IaCaaTa1414B.1.177.860.002568
S791T791IaCaaTa1313AY.390.000321
S791T791IaCaaTa1313B.1.5260.000306
S791T791IaCaaTa1212Q.10.001516
S791T791IaCaaTa1111B.1.5250.001245
S791T791IaCaaTa1010AY.9.10.000837
S791T791IaCaaTa99AY.470.00028
S791T791IaCaaTa88AY.300.003166
S791T791IaCaaTa77AY.360.001037
S791T791IaCaaTa77B.1.1.330.002946
S791T791IaCaaTa77B.1.1.5190.000278
S791T791IaCaaTa77B.1.4290.000165
S791T791IaCaaTa77B.40.015453
S791T791IaCaaTa66AY.1170.000507
S791T791IaCaaTa66AY.450.00073
S791T791IaCaaTa66B.1.5240.008439
S791T791IaCaaTa66B.1.5750.00182
S791T791IaCaaTa55AY.1130.000712
S791T791IaCaaTa55AY.1200.000186
S791T791IaCaaTa55AY.260.000142
S791T791IaCaaTa55AY.4.50.000537
S791T791IaCaaTa55AY.5.30.001687
S791T791IaCaaTa55AY.740.000578
S791T791IaCaaTa55AY.920.001436
S791T791IaCaaTa55B0.000639
S791T791IaCaaTa55B.1.1600.000156
S791T791IaCaaTa55B.1.214.20.002998
S791T791IaCaaTa55B.1.2430.000348
S791T791IaCaaTa55B.1.5960.000436
S791T791IaCaaTa55B.1.6210.000443
S791T791IaCaaTa55P.1.140.000239
S791T791IaCaaTa44A.210.01108
S791T791IaCaaTa44AY.10.001583
S791T791IaCaaTa44AY.230.000279
S791T791IaCaaTa44AY.330.000267
S791T791IaCaaTa44AY.39.10.000158
S791T791IaCaaTa44AY.950.003044
S791T791IaCaaTa44B.1.2400.000862
S791T791IaCaaTa44B.1.3690.001141
S791T791IaCaaTa44B.1.3960.002823
S791T791IaCaaTa44B.1.4270.000202
S791T791IaCaaTa44B.1.6280.001409
S791T791IaCaaTa44C.370.000464
S791T791IaCaaTa44P.1.70.001277
S791T791IaCaaTa33AY.1060.001005
S791T791IaCaaTa33AY.1190.000106
S791T791IaCaaTa33AY.4.20.000065
S791T791IaCaaTa33AY.460.000312
S791T791IaCaaTa33AY.50.000062
S791T791IaCaaTa33AY.70.000588
S791T791IaCaaTa33AY.730.001996
S791T791IaCaaTa33AY.750.000168
S791T791IaCaaTa33B.1.1.1760.001318
S791T791IaCaaTa33B.1.1.2140.000166
S791T791IaCaaTa33B.1.1.3180.000905
S791T791IaCaaTa33B.1.177.810.000568
S791T791IaCaaTa33B.1.177.820.001432
S791T791IaCaaTa33B.1.2580.0002
S791T791IaCaaTa33B.1.2650.003812
S791T791IaCaaTa33B.1.6230.001609
S791T791IaCaaTa33B.390.006993
S791T791IaCaaTa33P.1.150.000697
S791T791IaCaaTa220.111111
S791T791IaCaaTa22AY.1110.000366
S791T791IaCaaTa22AY.200.000078
S791T791IaCaaTa22AY.240.000862
S791T791IaCaaTa22AY.540.000191
S791T791IaCaaTa22AY.590.001059
S791T791IaCaaTa22AY.60.000082
S791T791IaCaaTa22AY.600.001876
S791T791IaCaaTa22AY.620.000871
S791T791IaCaaTa22AY.690.000373
S791T791IaCaaTa22AY.910.001461
S791T791IaCaaTa22B.1.1.2220.000408
S791T791IaCaaTa22B.1.1.4340.000697
S791T791IaCaaTa22B.1.1.630.000772
S791T791IaCaaTa22B.1.2080.08
S791T791IaCaaTa22B.1.2340.000264
S791T791IaCaaTa22B.1.466.20.000782
S791T791IaCaaTa22B.1.5650.001621
S791T791IaCaaTa22B.1.617.10.000258
S791T791IaCaaTa22D.20.00015
S791T791IaCaaTa11A.2.50.000499
S791T791IaCaaTa11AE.80.000489
S791T791IaCaaTa11AY.1020.000027
S791T791IaCaaTa11AY.1140.000231
S791T791IaCaaTa11AY.120.10.000321
S791T791IaCaaTa11AY.130.000161
S791T791IaCaaTa11AY.20.000356
S791T791IaCaaTa11AY.3.10.000085
S791T791IaCaaTa11AY.34.10.00051
S791T791IaCaaTa11AY.4.2.10.000149
S791T791IaCaaTa11AY.46.20.000635
S791T791IaCaaTa11AY.550.000917
S791T791IaCaaTa11AY.670.000464
S791T791IaCaaTa11AY.680.000274
S791T791IaCaaTa11AY.7.20.000559
S791T791IaCaaTa11AY.75.10.00018
S791T791IaCaaTa11AY.9.2.10.001976
S791T791IaCaaTa11AY.98.10.000048
S791T791IaCaaTa11AY.990.001049
S791T791IaCaaTa11AY.99.20.000092
S791T791IaCaaTa11AZ.20.000821
S791T791IaCaaTa11B.1.1.250.000569
S791T791IaCaaTa11B.1.1.2550.00303
S791T791IaCaaTa11B.1.1.2910.000742
S791T791IaCaaTa11B.1.1.3330.001076
S791T791IaCaaTa11B.1.1.3540.004386
S791T791IaCaaTa11B.1.1.4610.012048
S791T791IaCaaTa11B.1.1110.001175
S791T791IaCaaTa11B.1.1260.001276
S791T791IaCaaTa11B.1.177.240.001295
S791T791IaCaaTa11B.1.177.450.000381
S791T791IaCaaTa11B.1.177.570.000281
S791T791IaCaaTa11B.1.177.650.000665
S791T791IaCaaTa11B.1.2210.000071
S791T791IaCaaTa11B.1.2390.001221
S791T791IaCaaTa11B.1.258.170.000104
S791T791IaCaaTa11B.1.2800.007143
S791T791IaCaaTa11B.1.351.20.000303
S791T791IaCaaTa11B.1.360.000146
S791T791IaCaaTa11B.1.3620.001541
S791T791IaCaaTa11B.1.3670.000792
S791T791IaCaaTa11B.1.3750.00082
S791T791IaCaaTa11B.1.4000.000429
S791T791IaCaaTa11B.1.4090.000781
S791T791IaCaaTa11B.1.5600.00463
S791T791IaCaaTa11B.1.5760.000907
S791T791IaCaaTa11B.1.596.10.009346
S791T791IaCaaTa11B.1.6270.00202
S791T791IaCaaTa11B.100.008264
S791T791IaCaaTa11B.60.00091
S791T791IaCaaTa11C.360.000911
S791T791IaCaaTa11C.80.004464
S791T791IaCaaTa11P.1.100.000269
S791T791IaCaaTa11P.1.170.000162
S791T791IaCaaTa11P.30.001595
S791T791IaCaaTa11Q.20.000613
S791T791IaCaaTa11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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