CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T778T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S778T778TsynacCacT803178930.98281723894-23896
S778T778TsynacCacA8031780.0097123623894-23896
S778T778TsynacCacG8031600.0074710523894-23896

Details of the mutation T778T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S778T778TacCacT78938031All0.00151
S778T778TacCacA788031All0.000015
S778T778TacCacG608031All0.000011
S778T778TacCacT21912192AY.240.944397
S778T778TacCacA12192AY.240.000431
S778T778TacCacT11051109B.1.1.70.000989
S778T778TacCacG31109B.1.1.70.000003
S778T778TacCacA11109B.1.1.70.000001
S778T778TacCacT312312AY.1030.001937
S778T778TacCacT303303AY.250.001822
S778T778TacCacT292298AY.40.000454
S778T778TacCacG4298AY.40.000006
S778T778TacCacA2298AY.40.000003
S778T778TacCacT275285B.1.617.20.001035
S778T778TacCacA7285B.1.617.20.000026
S778T778TacCacG3285B.1.617.20.000011
S778T778TacCacT237239B.1.20.002087
S778T778TacCacA2239B.1.20.000018
S778T778TacCacT229235AY.440.001394
S778T778TacCacA5235AY.440.00003
S778T778TacCacG1235AY.440.000006
S778T778TacCacT213219AY.260.00603
S778T778TacCacA6219AY.260.00017
S778T778TacCacT212212AY.740.024517
S778T778TacCacT134143P.10.002111
S778T778TacCacA6143P.10.000095
S778T778TacCacG3143P.10.000047
S778T778TacCacT130132B.1.1770.001712
S778T778TacCacA2132B.1.1770.000026
S778T778TacCacT106106B.1.1.3170.043639
S778T778TacCacT104105B.1.6210.009206
S778T778TacCacG1105B.1.6210.000089
S778T778TacCacT9393AY.430.000412
S778T778TacCacT7679AY.290.001199
S778T778TacCacA379AY.290.000047
S778T778TacCacT7979B.1.5230.193627
S778T778TacCacT6872B.10.000623
S778T778TacCacA472B.10.000037
S778T778TacCacT4263B.1.10.000762
S778T778TacCacG1963B.1.10.000345
S778T778TacCacA263B.1.10.000036
S778T778TacCacT5959A.150.936508
S778T778TacCacT5656B.1.36.210.12095
S778T778TacCacT4655AY.1200.00171
S778T778TacCacG955AY.1200.000335
S778T778TacCacT5252AY.980.004108
S778T778TacCacT4952B.1.2210.003481
S778T778TacCacG352B.1.2210.000213
S778T778TacCacT5252B.1.258.110.02061
S778T778TacCacT5252P.1.70.016603
S778T778TacCacT4345AY.30.000428
S778T778TacCacA145AY.30.00001
S778T778TacCacG145AY.30.00001
S778T778TacCacT4545AY.4.20.000976
S778T778TacCacT4444B.1.177.600.009611
S778T778TacCacT4141AY.200.001593
S778T778TacCacT4141B.1.1.5190.001628
S778T778TacCacT3939B.1.1.2220.007956
S778T778TacCacT3939B.1.2430.002714
S778T778TacCacT2429AY.390.000593
S778T778TacCacA429AY.390.000099
S778T778TacCacG129AY.390.000025
S778T778TacCacT2828AY.3.10.002387
S778T778TacCacT2427AY.1020.000636
S778T778TacCacA227AY.1020.000053
S778T778TacCacG127AY.1020.000027
S778T778TacCacT2627AY.130.004185
S778T778TacCacA127AY.130.000161
S778T778TacCacT2727P.1.140.001291
S778T778TacCacT2626A.2.50.012974
S778T778TacCacT2525R.10.00225
S778T778TacCacT2424B.1.177.820.011456
S778T778TacCacT2323AY.230.001604
S778T778TacCacT2121C.370.002437
S778T778TacCacT1920AY.46.60.001372
S778T778TacCacG120AY.46.60.000072
S778T778TacCacT2020B.1.3240.032103
S778T778TacCacT1920B.1.5260.000447
S778T778TacCacA120B.1.5260.000024
S778T778TacCacT1819AY.1210.002436
S778T778TacCacG119AY.1210.000135
S778T778TacCacT1919B.1.1600.000593
S778T778TacCacT1919B.1.177.730.010759
S778T778TacCacT1717AY.9.10.001423
S778T778TacCacT1717B.1.1.2140.000943
S778T778TacCacT1717B.1.2580.001131
S778T778TacCacT1517B.1.3510.000446
S778T778TacCacG117B.1.3510.00003
S778T778TacCacA117B.1.3510.00003
S778T778TacCacT1717B.1.4290.0004
S778T778TacCacT1515AY.710.007126
S778T778TacCacT1414AY.1190.000494
S778T778TacCacT1414B.1.258.220.037333
S778T778TacCacT1313B.1.1.700.004434
S778T778TacCacT1313B.1.2360.026694
S778T778TacCacT712AY.330.000467
S778T778TacCacA512AY.330.000334
S778T778TacCacT1212B.1.5960.001046
S778T778TacCacT1111B.1.1.1650.169231
S778T778TacCacT910AY.360.001334
S778T778TacCacG110AY.360.000148
S778T778TacCacT910AY.420.000362
S778T778TacCacG110AY.420.00004
S778T778TacCacT1010AY.620.004357
S778T778TacCacT910AY.750.000504
S778T778TacCacA110AY.750.000056
S778T778TacCacT1010AY.9.20.000367
S778T778TacCacT99B.1.214.30.064286
S778T778TacCacT88AY.460.000833
S778T778TacCacT88AY.46.20.005083
S778T778TacCacT88AY.540.000763
S778T778TacCacT88AY.60.000329
S778T778TacCacT88AY.720.010884
S778T778TacCacT88B.1.177.40.001688
S778T778TacCacT88B.1.177.80.00602
S778T778TacCacT88B.1.438.10.000858
S778T778TacCacT88B.1.5610.003176
S778T778TacCacT88P.1.170.001294
S778T778TacCacT77AY.160.002658
S778T778TacCacA57AY.4.50.000537
S778T778TacCacT27AY.4.50.000215
S778T778TacCacA47AY.670.001857
S778T778TacCacT37AY.670.001393
S778T778TacCacT66AY.1130.000854
S778T778TacCacT66AY.39.10.000238
S778T778TacCacT46AY.450.000487
S778T778TacCacG26AY.450.000243
S778T778TacCacT66AY.470.000187
S778T778TacCacT46AY.50.000083
S778T778TacCacA26AY.50.000041
S778T778TacCacT66AY.99.20.000553
S778T778TacCacT66B.1.177.430.008863
S778T778TacCacT55AY.1000.00023
S778T778TacCacT55AY.116.10.001557
S778T778TacCacT55AY.1170.000423
S778T778TacCacT55AY.98.10.000242
S778T778TacCacA35B.1.1.3180.000905
S778T778TacCacT25B.1.1.3180.000604
S778T778TacCacT45B.1.1.4640.005891
S778T778TacCacA15B.1.1.4640.001473
S778T778TacCacT55B.1.4270.000252
S778T778TacCacT55P.1.10.001588
S778T778TacCacT44AY.23.10.001669
S778T778TacCacT44AY.4.2.10.000596
S778T778TacCacT44AY.600.003752
S778T778TacCacT44AY.640.002381
S778T778TacCacT44B.1.1.280.001245
S778T778TacCacT44B.1.1.3720.002755
S778T778TacCacT44B.1.177.70.000659
S778T778TacCacT44B.1.1990.016529
S778T778TacCacT44B.1.360.000584
S778T778TacCacT44B.1.4260.004036
S778T778TacCacT44B.1.5510.005161
S778T778TacCacT44B.400.001457
S778T778TacCacT44P.1.150.000929
S778T778TacCacT44Q.10.000505
S778T778TacCacT33AY.1100.000338
S778T778TacCacT33AY.1160.00086
S778T778TacCacT33AY.340.000291
S778T778TacCacT33AY.570.001969
S778T778TacCacT33AY.90.000203
S778T778TacCacT33B.1.1.1190.103448
S778T778TacCacT33B.1.1.4340.001046
S778T778TacCacT33B.1.2320.001612
S778T778TacCacT33B.1.258.170.000312
S778T778TacCacG23B.1.36.290.001035
S778T778TacCacT13B.1.36.290.000517
S778T778TacCacT33B.1.617.10.000387
S778T778TacCacT33C.350.002322
S778T778TacCacT33N.60.021277
S778T778TacCacT33P.1.160.001122
S778T778TacCacT33P.1.17.10.002625
S778T778TacCacT33P.20.00056
S778T778TacCacT22AY.1080.002205
S778T778TacCacT22AY.1110.000366
S778T778TacCacT22AY.120.20.002571
S778T778TacCacT22AY.270.000129
S778T778TacCacT22AY.370.000632
S778T778TacCacT22AY.4.40.000818
S778T778TacCacT12AY.5.40.000277
S778T778TacCacA12AY.5.40.000277
S778T778TacCacA12AY.550.000917
S778T778TacCacT12AY.550.000917
S778T778TacCacT22AY.580.001815
S778T778TacCacT22AY.610.00021
S778T778TacCacT22AY.770.002255
S778T778TacCacT22AY.950.001522
S778T778TacCacT22B.1.1.1010.02
S778T778TacCacT22B.1.1.1630.015267
S778T778TacCacT22B.1.1.2000.014925
S778T778TacCacT22B.1.1.3060.000877
S778T778TacCacT12B.1.1.3110.000358
S778T778TacCacA12B.1.1.3110.000358
S778T778TacCacT22B.1.1.3910.017094
S778T778TacCacT22B.1.1.4330.002849
S778T778TacCacT22B.1.160.140.004237
S778T778TacCacT22B.1.177.180.00232
S778T778TacCacT22B.1.177.580.002663
S778T778TacCacT22B.1.177.860.000367
S778T778TacCacT22B.1.2400.000431
S778T778TacCacT22B.1.2410.001623
S778T778TacCacT22B.1.3110.000549
S778T778TacCacT22B.1.351.50.001199
S778T778TacCacT22B.1.3910.002255
S778T778TacCacT22B.1.3990.003868
S778T778TacCacT22B.1.4000.000858
S778T778TacCacT22B.1.4530.006472
S778T778TacCacT22B.1.4680.011429
S778T778TacCacT22B.1.5380.016129
S778T778TacCacT22B.1.5670.006667
S778T778TacCacT22B.1.5950.000522
S778T778TacCacT22B.1.6250.004706
S778T778TacCacT22B.1.6370.000146
S778T778TacCacT22C.10.004785
S778T778TacCacT22P.1.120.000968
S778T778TacCacT22P.1.130.001797
S778T778TacCacT11A0.000387
S778T778TacCacT11A.110.058824
S778T778TacCacT11AA.80.022222
S778T778TacCacT11AE.70.083333
S778T778TacCacT11AL.10.012987
S778T778TacCacT11AY.1010.00049
S778T778TacCacT11AY.1140.000231
S778T778TacCacT11AY.1180.000063
S778T778TacCacT11AY.120.000316
S778T778TacCacT11AY.120.2.10.000498
S778T778TacCacT11AY.140.000088
S778T778TacCacT11AY.16.10.00047
S778T778TacCacT11AY.210.001898
S778T778TacCacT11AY.280.00189
S778T778TacCacT11AY.300.000396
S778T778TacCacT11AY.410.000294
S778T778TacCacT11AY.46.40.000165
S778T778TacCacA11AY.5.30.000337
S778T778TacCacT11AY.530.000288
S778T778TacCacT11AY.560.001605
S778T778TacCacT11AY.650.000533
S778T778TacCacT11AY.680.000274
S778T778TacCacT11AY.820.001357
S778T778TacCacT11AY.840.000437
S778T778TacCacT11AY.880.000884
S778T778TacCacT11AY.920.000287
S778T778TacCacT11AY.930.000273
S778T778TacCacT11AZ.20.000821
S778T778TacCacT11B0.000128
S778T778TacCacT11B.1.1.1390.022727
S778T778TacCacT11B.1.1.1410.002012
S778T778TacCacT11B.1.1.2160.00089
S778T778TacCacT11B.1.1.2200.001859
S778T778TacCacT11B.1.1.2260.005814
S778T778TacCacT11B.1.1.2580.003257
S778T778TacCacT11B.1.1.2770.000759
S778T778TacCacT11B.1.1.2890.002083
S778T778TacCacT11B.1.1.3120.001912
S778T778TacCacT11B.1.1.3160.000925
S778T778TacCacT11B.1.1.3190.017544
S778T778TacCacT11B.1.1.3260.001761
S778T778TacCacT11B.1.1.3330.001076
S778T778TacCacT11B.1.1.3680.003086
S778T778TacCacT11B.1.1.3710.010417
S778T778TacCacT11B.1.1.390.00051
S778T778TacCacT11B.1.1.3970.002252
S778T778TacCacT11B.1.1.5230.001563
S778T778TacCacT11B.1.1430.021277
S778T778TacCacT11B.1.1570.002985
S778T778TacCacT11B.1.177.120.000152
S778T778TacCacT11B.1.177.650.000665
S778T778TacCacT11B.1.177.830.001481
S778T778TacCacT11B.1.2140.003663
S778T778TacCacT11B.1.214.10.02
S778T778TacCacT11B.1.214.20.0006
S778T778TacCacT11B.1.221.20.004016
S778T778TacCacT11B.1.2340.000132
S778T778TacCacT11B.1.2390.001221
S778T778TacCacT11B.1.2790.000514
S778T778TacCacA11B.1.30.002618
S778T778TacCacT11B.1.3370.005587
S778T778TacCacT11B.1.350.008475
S778T778TacCacT11B.1.36.10.00114
S778T778TacCacA11B.1.36.180.00042
S778T778TacCacT11B.1.36.310.001751
S778T778TacCacT11B.1.36.360.000602
S778T778TacCacT11B.1.3620.001541
S778T778TacCacT11B.1.3660.004878
S778T778TacCacT11B.1.3690.000285
S778T778TacCacT11B.1.3710.001122
S778T778TacCacT11B.1.4090.000781
S778T778TacCacG11B.1.4160.001269
S778T778TacCacT11B.1.416.10.001563
S778T778TacCacT11B.1.4330.003195
S778T778TacCacT11B.1.4560.003268
S778T778TacCacT11B.1.4620.007246
S778T778TacCacT11B.1.466.20.000391
S778T778TacCacT11B.1.4710.002732
S778T778TacCacT11B.1.4740.001901
S778T778TacCacT11B.1.4970.000315
S778T778TacCacT11B.1.4990.00105
S778T778TacCacT11B.1.5250.000113
S778T778TacCacT11B.1.5800.004065
S778T778TacCacT11B.1.5820.000491
S778T778TacCacT11B.1.6180.004032
S778T778TacCacT11B.1.619.10.000641
S778T778TacCacT11B.1.9.40.006135
S778T778TacCacT11B.30.000831
S778T778TacCacG11D.20.000075
S778T778TacCacT11N.40.004255
S778T778TacCacT11P.1.40.000977
S778T778TacCacT11P.30.001595
S778T778TacCacT11S.10.00495
S778T778TacCacT11W.10.008696