CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T549I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S549T549InonsynaCaaTa116111140.95951823207-23209
S549T549InonsynaCAaTT1161460.03962123207-23209
S549T549InonsynaCAaTC116110.00086132623207-23209

Details of the mutation T549I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S549T549IaCaaTa11141161All0.000213
S549T549IaCAaTT461161All0.000009
S549T549IaCAaTC11161All0
S549T549IaCaaTa854897B.1.1.70.000765
S549T549IaCAaTT42897B.1.1.70.000038
S549T549IaCAaTC1897B.1.1.70.000001
S549T549IaCaaTa4545XA1
S549T549IaCaaTa3637AY.250.000217
S549T549IaCAaTT137AY.250.000006
S549T549IaCaaTa2929AY.430.000128
S549T549IaCaaTa2828AY.40.000044
S549T549IaCaaTa1212B.1.10.000218
S549T549IaCaaTa88AY.390.000198
S549T549IaCaaTa77AY.4.30.005892
S549T549IaCaaTa56B.10.000046
S549T549IaCAaTT16B.10.000009
S549T549IaCaaTa66B.1.177.520.010545
S549T549IaCaaTa66B.1.2340.000792
S549T549IaCaaTa55AY.46.60.000361
S549T549IaCaaTa45P.10.000063
S549T549IaCAaTT15P.10.000016
S549T549IaCaaTa44AY.1030.000025
S549T549IaCaaTa44AY.440.000024
S549T549IaCaaTa44AY.720.005442
S549T549IaCaaTa44B.1.1.2650.012618
S549T549IaCaaTa44B.1.617.20.000015
S549T549IaCaaTa33AY.30.00003
S549T549IaCaaTa33AY.470.000093
S549T549IaCaaTa33AY.50.000062
S549T549IaCaaTa33B.1.1.390.001529
S549T549IaCaaTa33B.1.20.000026
S549T549IaCaaTa22AY.1110.000366
S549T549IaCaaTa22AY.340.000194
S549T549IaCaaTa22AY.920.000575
S549T549IaCaaTa22B.1.1770.000026
S549T549IaCAaTT12B.1.5760.000907
S549T549IaCaaTa12B.1.5760.000907
S549T549IaCaaTa22D.20.00015
S549T549IaCaaTa11AY.1060.000335
S549T549IaCaaTa11AY.1150.005208
S549T549IaCaaTa11AY.1170.000085
S549T549IaCaaTa11AY.200.000039
S549T549IaCaaTa11AY.260.000028
S549T549IaCaaTa11AY.4.20.000022
S549T549IaCaaTa11AY.750.000056
S549T549IaCaaTa11AY.960.002075
S549T549IaCaaTa11AY.98.10.000048
S549T549IaCaaTa11B.1.1.2220.000204
S549T549IaCaaTa11B.1.1.2800.003086
S549T549IaCaaTa11B.1.1.2840.000107
S549T549IaCaaTa11B.1.1.330.000421
S549T549IaCaaTa11B.1.1.470.005348
S549T549IaCaaTa11B.1.1600.000031
S549T549IaCaaTa11B.1.2580.000067
S549T549IaCaaTa11B.1.3360.002439
S549T549IaCaaTa11B.1.3620.001541
S549T549IaCaaTa11B.1.4290.000024
S549T549IaCaaTa11B.1.5250.000113
S549T549IaCaaTa11B.1.5270.003704
S549T549IaCaaTa11B.1.5960.000087
S549T549IaCaaTa11Q.30.000145