CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 302 | T302T | syn | acG | acT | 13237 | 12270 | 0.926947 | 22466-22468 | |
S | 302 | T302T | syn | acG | acA | 13237 | 751 | 0.0567349 | 22466-22468 | |
S | 302 | T302T | syn | acG | acC | 13237 | 216 | 0.0163179 | 22466-22468 |
Details of the mutation T302T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 302 | T302T | acG | acT | 12270 | 13237 | All | 0.002347 |
S | 302 | T302T | acG | acA | 751 | 13237 | All | 0.000144 |
S | 302 | T302T | acG | acC | 216 | 13237 | All | 0.000041 |
S | 302 | T302T | acG | acT | 3525 | 3629 | B.1.1.7 | 0.003156 |
S | 302 | T302T | acG | acA | 74 | 3629 | B.1.1.7 | 0.000066 |
S | 302 | T302T | acG | acC | 30 | 3629 | B.1.1.7 | 0.000027 |
S | 302 | T302T | acG | acT | 1491 | 1491 | Q.2 | 0.914724 |
S | 302 | T302T | acG | acT | 858 | 945 | AY.4 | 0.001335 |
S | 302 | T302T | acG | acA | 85 | 945 | AY.4 | 0.000132 |
S | 302 | T302T | acG | acC | 2 | 945 | AY.4 | 0.000003 |
S | 302 | T302T | acG | acT | 776 | 809 | B.1.617.2 | 0.002922 |
S | 302 | T302T | acG | acC | 18 | 809 | B.1.617.2 | 0.000068 |
S | 302 | T302T | acG | acA | 15 | 809 | B.1.617.2 | 0.000056 |
S | 302 | T302T | acG | acT | 719 | 719 | B.1.427 | 0.036308 |
S | 302 | T302T | acG | acT | 523 | 523 | A.27 | 0.865894 |
S | 302 | T302T | acG | acT | 403 | 403 | A | 0.15596 |
S | 302 | T302T | acG | acT | 361 | 372 | AY.43 | 0.001599 |
S | 302 | T302T | acG | acA | 10 | 372 | AY.43 | 0.000044 |
S | 302 | T302T | acG | acC | 1 | 372 | AY.43 | 0.000004 |
S | 302 | T302T | acG | acT | 258 | 345 | B.1.2 | 0.002272 |
S | 302 | T302T | acG | acA | 86 | 345 | B.1.2 | 0.000757 |
S | 302 | T302T | acG | acC | 1 | 345 | B.1.2 | 0.000009 |
S | 302 | T302T | acG | acT | 316 | 316 | A.28 | 0.835979 |
S | 302 | T302T | acG | acT | 273 | 283 | P.1 | 0.004301 |
S | 302 | T302T | acG | acA | 8 | 283 | P.1 | 0.000126 |
S | 302 | T302T | acG | acC | 2 | 283 | P.1 | 0.000032 |
S | 302 | T302T | acG | acA | 186 | 204 | AY.120 | 0.006915 |
S | 302 | T302T | acG | acT | 17 | 204 | AY.120 | 0.000632 |
S | 302 | T302T | acG | acC | 1 | 204 | AY.120 | 0.000037 |
S | 302 | T302T | acG | acT | 126 | 159 | B.1.177 | 0.001659 |
S | 302 | T302T | acG | acA | 33 | 159 | B.1.177 | 0.000435 |
S | 302 | T302T | acG | acT | 134 | 149 | B.1 | 0.001227 |
S | 302 | T302T | acG | acA | 14 | 149 | B.1 | 0.000128 |
S | 302 | T302T | acG | acC | 1 | 149 | B.1 | 0.000009 |
S | 302 | T302T | acG | acT | 102 | 145 | AY.42 | 0.004103 |
S | 302 | T302T | acG | acC | 40 | 145 | AY.42 | 0.001609 |
S | 302 | T302T | acG | acA | 3 | 145 | AY.42 | 0.000121 |
S | 302 | T302T | acG | acT | 124 | 130 | AY.20 | 0.004819 |
S | 302 | T302T | acG | acA | 5 | 130 | AY.20 | 0.000194 |
S | 302 | T302T | acG | acC | 1 | 130 | AY.20 | 0.000039 |
S | 302 | T302T | acG | acT | 121 | 129 | AY.25 | 0.000728 |
S | 302 | T302T | acG | acA | 7 | 129 | AY.25 | 0.000042 |
S | 302 | T302T | acG | acC | 1 | 129 | AY.25 | 0.000006 |
S | 302 | T302T | acG | acT | 121 | 124 | B.1.1 | 0.002195 |
S | 302 | T302T | acG | acC | 2 | 124 | B.1.1 | 0.000036 |
S | 302 | T302T | acG | acA | 1 | 124 | B.1.1 | 0.000018 |
S | 302 | T302T | acG | acT | 109 | 121 | AY.103 | 0.000677 |
S | 302 | T302T | acG | acA | 10 | 121 | AY.103 | 0.000062 |
S | 302 | T302T | acG | acC | 2 | 121 | AY.103 | 0.000012 |
S | 302 | T302T | acG | acT | 93 | 109 | AY.44 | 0.000566 |
S | 302 | T302T | acG | acA | 11 | 109 | AY.44 | 0.000067 |
S | 302 | T302T | acG | acC | 5 | 109 | AY.44 | 0.00003 |
S | 302 | T302T | acG | acC | 67 | 107 | AY.39 | 0.001656 |
S | 302 | T302T | acG | acT | 24 | 107 | AY.39 | 0.000593 |
S | 302 | T302T | acG | acA | 16 | 107 | AY.39 | 0.000395 |
S | 302 | T302T | acG | acT | 101 | 101 | B.1.160 | 0.00315 |
S | 302 | T302T | acG | acT | 86 | 86 | B.1.36.29 | 0.04449 |
S | 302 | T302T | acG | acT | 66 | 66 | B.1.1.12 | 0.492537 |
S | 302 | T302T | acG | acT | 64 | 64 | A.19 | 0.603774 |
S | 302 | T302T | acG | acT | 64 | 64 | B.1.351 | 0.001902 |
S | 302 | T302T | acG | acT | 59 | 59 | AY.5 | 0.001218 |
S | 302 | T302T | acG | acT | 57 | 58 | AY.46 | 0.005933 |
S | 302 | T302T | acG | acA | 1 | 58 | AY.46 | 0.000104 |
S | 302 | T302T | acG | acT | 57 | 58 | B.1.221 | 0.004049 |
S | 302 | T302T | acG | acA | 1 | 58 | B.1.221 | 0.000071 |
S | 302 | T302T | acG | acT | 46 | 46 | B.1.621 | 0.004072 |
S | 302 | T302T | acG | acT | 39 | 43 | AY.102 | 0.001034 |
S | 302 | T302T | acG | acA | 4 | 43 | AY.102 | 0.000106 |
S | 302 | T302T | acG | acT | 40 | 40 | C.35 | 0.03096 |
S | 302 | T302T | acG | acT | 18 | 36 | AY.4.2 | 0.00039 |
S | 302 | T302T | acG | acC | 17 | 36 | AY.4.2 | 0.000369 |
S | 302 | T302T | acG | acA | 1 | 36 | AY.4.2 | 0.000022 |
S | 302 | T302T | acG | acT | 35 | 36 | AY.46.5 | 0.006944 |
S | 302 | T302T | acG | acA | 1 | 36 | AY.46.5 | 0.000198 |
S | 302 | T302T | acG | acT | 34 | 34 | B.1.1.277 | 0.025797 |
S | 302 | T302T | acG | acT | 25 | 33 | B.1.1.519 | 0.000993 |
S | 302 | T302T | acG | acA | 5 | 33 | B.1.1.519 | 0.000199 |
S | 302 | T302T | acG | acC | 3 | 33 | B.1.1.519 | 0.000119 |
S | 302 | T302T | acG | acT | 28 | 30 | AY.3 | 0.000278 |
S | 302 | T302T | acG | acA | 2 | 30 | AY.3 | 0.00002 |
S | 302 | T302T | acG | acA | 28 | 30 | B.1.1.1 | 0.009147 |
S | 302 | T302T | acG | acT | 2 | 30 | B.1.1.1 | 0.000653 |
S | 302 | T302T | acG | acA | 23 | 29 | AY.53 | 0.006613 |
S | 302 | T302T | acG | acT | 6 | 29 | AY.53 | 0.001725 |
S | 302 | T302T | acG | acT | 24 | 28 | AY.47 | 0.000747 |
S | 302 | T302T | acG | acA | 4 | 28 | AY.47 | 0.000124 |
S | 302 | T302T | acG | acT | 27 | 27 | AY.119 | 0.000953 |
S | 302 | T302T | acG | acT | 26 | 27 | AY.29 | 0.00041 |
S | 302 | T302T | acG | acA | 1 | 27 | AY.29 | 0.000016 |
S | 302 | T302T | acG | acT | 23 | 26 | P.1.14 | 0.001099 |
S | 302 | T302T | acG | acA | 3 | 26 | P.1.14 | 0.000143 |
S | 302 | T302T | acG | acT | 22 | 23 | B | 0.002812 |
S | 302 | T302T | acG | acA | 1 | 23 | B | 0.000128 |
S | 302 | T302T | acG | acT | 17 | 22 | AY.26 | 0.000481 |
S | 302 | T302T | acG | acA | 5 | 22 | AY.26 | 0.000142 |
S | 302 | T302T | acG | acT | 22 | 22 | AY.54 | 0.002098 |
S | 302 | T302T | acG | acT | 21 | 21 | A.9 | 0.954545 |
S | 302 | T302T | acG | acT | 15 | 21 | B.1.36 | 0.002189 |
S | 302 | T302T | acG | acA | 6 | 21 | B.1.36 | 0.000875 |
S | 302 | T302T | acG | acT | 21 | 21 | B.1.526 | 0.000494 |
S | 302 | T302T | acG | acT | 20 | 20 | AY.7.1 | 0.002254 |
S | 302 | T302T | acG | acC | 16 | 18 | AY.121 | 0.002165 |
S | 302 | T302T | acG | acT | 2 | 18 | AY.121 | 0.000271 |
S | 302 | T302T | acG | acT | 18 | 18 | AY.2 | 0.00641 |
S | 302 | T302T | acG | acT | 10 | 18 | AY.9.1 | 0.000837 |
S | 302 | T302T | acG | acA | 8 | 18 | AY.9.1 | 0.00067 |
S | 302 | T302T | acG | acT | 16 | 16 | AY.66 | 0.017112 |
S | 302 | T302T | acG | acT | 15 | 16 | AY.98 | 0.001185 |
S | 302 | T302T | acG | acA | 1 | 16 | AY.98 | 0.000079 |
S | 302 | T302T | acG | acT | 14 | 16 | B.1.596 | 0.00122 |
S | 302 | T302T | acG | acA | 2 | 16 | B.1.596 | 0.000174 |
S | 302 | T302T | acG | acT | 15 | 15 | AY.107 | 0.00699 |
S | 302 | T302T | acG | acT | 15 | 15 | B.1.599 | 0.054745 |
S | 302 | T302T | acG | acT | 14 | 14 | AY.48 | 0.006512 |
S | 302 | T302T | acG | acT | 13 | 13 | A.7 | 0.722222 |
S | 302 | T302T | acG | acT | 13 | 13 | AY.104 | 0.025794 |
S | 302 | T302T | acG | acT | 13 | 13 | B.1.1.280 | 0.040123 |
S | 302 | T302T | acG | acT | 11 | 12 | AY.45 | 0.001339 |
S | 302 | T302T | acG | acA | 1 | 12 | AY.45 | 0.000122 |
S | 302 | T302T | acG | acA | 8 | 12 | AY.6 | 0.000329 |
S | 302 | T302T | acG | acT | 4 | 12 | AY.6 | 0.000165 |
S | 302 | T302T | acG | acT | 12 | 12 | B.1.1.28 | 0.003735 |
S | 302 | T302T | acG | acT | 12 | 12 | B.1.1.289 | 0.025 |
S | 302 | T302T | acG | acA | 12 | 12 | B.1.628 | 0.004228 |
S | 302 | T302T | acG | acT | 12 | 12 | C.37 | 0.001393 |
S | 302 | T302T | acG | acA | 11 | 11 | B.1.1.207 | 0.013002 |
S | 302 | T302T | acG | acT | 11 | 11 | B.1.1.214 | 0.00061 |
S | 302 | T302T | acG | acT | 11 | 11 | B.1.429 | 0.000259 |
S | 302 | T302T | acG | acA | 10 | 11 | B.1.623 | 0.005365 |
S | 302 | T302T | acG | acT | 1 | 11 | B.1.623 | 0.000536 |
S | 302 | T302T | acG | acT | 10 | 10 | AY.117 | 0.000845 |
S | 302 | T302T | acG | acT | 9 | 10 | AY.23 | 0.000628 |
S | 302 | T302T | acG | acA | 1 | 10 | AY.23 | 0.00007 |
S | 302 | T302T | acG | acT | 7 | 10 | AY.33 | 0.000467 |
S | 302 | T302T | acG | acA | 3 | 10 | AY.33 | 0.0002 |
S | 302 | T302T | acG | acT | 5 | 9 | AY.118 | 0.000313 |
S | 302 | T302T | acG | acA | 4 | 9 | AY.118 | 0.000251 |
S | 302 | T302T | acG | acT | 9 | 9 | B.1.1.57 | 0.103448 |
S | 302 | T302T | acG | acT | 9 | 9 | B.1.411 | 0.033333 |
S | 302 | T302T | acG | acT | 8 | 8 | AY.4.4 | 0.003273 |
S | 302 | T302T | acG | acT | 8 | 8 | AY.70 | 0.001668 |
S | 302 | T302T | acG | acT | 8 | 8 | AY.94 | 0.003541 |
S | 302 | T302T | acG | acT | 7 | 8 | B.1.1.33 | 0.002946 |
S | 302 | T302T | acG | acA | 1 | 8 | B.1.1.33 | 0.000421 |
S | 302 | T302T | acG | acT | 8 | 8 | B.1.36.8 | 0.008 |
S | 302 | T302T | acG | acT | 8 | 8 | Q.1 | 0.001011 |
S | 302 | T302T | acG | acT | 7 | 7 | AY.9.2 | 0.000257 |
S | 302 | T302T | acG | acT | 7 | 7 | B.1.1.416 | 0.006335 |
S | 302 | T302T | acG | acT | 7 | 7 | B.1.1.50 | 0.004752 |
S | 302 | T302T | acG | acT | 7 | 7 | B.1.421 | 0.052239 |
S | 302 | T302T | acG | acT | 7 | 7 | B.1.468 | 0.04 |
S | 302 | T302T | acG | acT | 6 | 6 | A.12 | 1 |
S | 302 | T302T | acG | acT | 5 | 6 | AY.106 | 0.001674 |
S | 302 | T302T | acG | acA | 1 | 6 | AY.106 | 0.000335 |
S | 302 | T302T | acG | acT | 5 | 6 | AY.114 | 0.001156 |
S | 302 | T302T | acG | acA | 1 | 6 | AY.114 | 0.000231 |
S | 302 | T302T | acG | acT | 6 | 6 | AY.46.6 | 0.000433 |
S | 302 | T302T | acG | acT | 6 | 6 | AY.7 | 0.001176 |
S | 302 | T302T | acG | acT | 5 | 6 | B.1.1.222 | 0.00102 |
S | 302 | T302T | acG | acA | 1 | 6 | B.1.1.222 | 0.000204 |
S | 302 | T302T | acG | acT | 6 | 6 | B.1.177.18 | 0.006961 |
S | 302 | T302T | acG | acT | 6 | 6 | B.1.525 | 0.000679 |
S | 302 | T302T | acG | acA | 5 | 5 | AY.120.2 | 0.006427 |
S | 302 | T302T | acG | acT | 4 | 5 | AY.39.1 | 0.000158 |
S | 302 | T302T | acG | acC | 1 | 5 | AY.39.1 | 0.00004 |
S | 302 | T302T | acG | acT | 5 | 5 | B.1.1.398 | 0.016129 |
S | 302 | T302T | acG | acT | 5 | 5 | B.1.1.409 | 0.014164 |
S | 302 | T302T | acG | acT | 4 | 5 | B.1.240 | 0.000862 |
S | 302 | T302T | acG | acA | 1 | 5 | B.1.240 | 0.000216 |
S | 302 | T302T | acG | acT | 5 | 5 | B.1.36.9 | 0.016077 |
S | 302 | T302T | acG | acT | 5 | 5 | B.1.637 | 0.000365 |
S | 302 | T302T | acG | acT | 4 | 4 | A.2.5 | 0.001996 |
S | 302 | T302T | acG | acT | 4 | 4 | AY.116 | 0.001147 |
S | 302 | T302T | acG | acT | 4 | 4 | AY.3.1 | 0.000341 |
S | 302 | T302T | acG | acT | 2 | 4 | AY.4.2.1 | 0.000298 |
S | 302 | T302T | acG | acA | 2 | 4 | AY.4.2.1 | 0.000298 |
S | 302 | T302T | acG | acT | 4 | 4 | AY.46.4 | 0.000658 |
S | 302 | T302T | acG | acA | 2 | 4 | AY.75 | 0.000112 |
S | 302 | T302T | acG | acT | 2 | 4 | AY.75 | 0.000112 |
S | 302 | T302T | acG | acT | 4 | 4 | AY.9 | 0.00027 |
S | 302 | T302T | acG | acT | 4 | 4 | AY.98.1 | 0.000194 |
S | 302 | T302T | acG | acT | 3 | 4 | AY.99.2 | 0.000276 |
S | 302 | T302T | acG | acA | 1 | 4 | AY.99.2 | 0.000092 |
S | 302 | T302T | acG | acT | 4 | 4 | B.1.1.130 | 0.061538 |
S | 302 | T302T | acG | acT | 4 | 4 | B.1.177.31 | 0.045977 |
S | 302 | T302T | acG | acT | 4 | 4 | B.1.210 | 0.008529 |
S | 302 | T302T | acG | acT | 3 | 4 | B.1.243 | 0.000209 |
S | 302 | T302T | acG | acC | 1 | 4 | B.1.243 | 0.00007 |
S | 302 | T302T | acG | acT | 4 | 4 | B.1.36.1 | 0.004561 |
S | 302 | T302T | acG | acC | 2 | 4 | D.2 | 0.00015 |
S | 302 | T302T | acG | acT | 2 | 4 | D.2 | 0.00015 |
S | 302 | T302T | acG | acT | 4 | 4 | P.1.1 | 0.001271 |
S | 302 | T302T | acG | acT | 4 | 4 | P.1.17 | 0.000647 |
S | 302 | T302T | acG | acT | 3 | 3 | AY.100 | 0.000138 |
S | 302 | T302T | acG | acT | 2 | 3 | AY.108 | 0.002205 |
S | 302 | T302T | acG | acA | 1 | 3 | AY.108 | 0.001103 |
S | 302 | T302T | acG | acT | 3 | 3 | AY.29.1 | 0.000662 |
S | 302 | T302T | acG | acT | 3 | 3 | AY.61 | 0.000314 |
S | 302 | T302T | acG | acT | 3 | 3 | AY.7.2 | 0.001678 |
S | 302 | T302T | acG | acT | 3 | 3 | AY.74 | 0.000347 |
S | 302 | T302T | acG | acT | 3 | 3 | AY.79 | 0.003632 |
S | 302 | T302T | acG | acT | 3 | 3 | AY.92 | 0.000862 |
S | 302 | T302T | acG | acT | 2 | 3 | AY.95 | 0.001522 |
S | 302 | T302T | acG | acC | 1 | 3 | AY.95 | 0.000761 |
S | 302 | T302T | acG | acT | 3 | 3 | B.1.1.161 | 0.010601 |
S | 302 | T302T | acG | acT | 3 | 3 | B.1.1.216 | 0.002671 |
S | 302 | T302T | acG | acT | 3 | 3 | B.1.1.306 | 0.001315 |
S | 302 | T302T | acG | acT | 3 | 3 | B.1.1.34 | 0.039474 |
S | 302 | T302T | acG | acT | 3 | 3 | B.1.1.70 | 0.001023 |
S | 302 | T302T | acG | acT | 3 | 3 | B.1.177.56 | 0.002003 |
S | 302 | T302T | acG | acT | 3 | 3 | B.1.177.81 | 0.000568 |
S | 302 | T302T | acG | acT | 2 | 3 | B.1.258 | 0.000133 |
S | 302 | T302T | acG | acA | 1 | 3 | B.1.258 | 0.000067 |
S | 302 | T302T | acG | acT | 3 | 3 | B.1.258.3 | 0.005025 |
S | 302 | T302T | acG | acT | 3 | 3 | B.1.416 | 0.003807 |
S | 302 | T302T | acG | acA | 2 | 3 | B.1.466.2 | 0.000782 |
S | 302 | T302T | acG | acT | 1 | 3 | B.1.466.2 | 0.000391 |
S | 302 | T302T | acG | acT | 3 | 3 | B.1.517 | 0.001281 |
S | 302 | T302T | acG | acT | 3 | 3 | B.1.595 | 0.000783 |
S | 302 | T302T | acG | acT | 3 | 3 | P.1.12 | 0.001452 |
S | 302 | T302T | acG | acT | 3 | 3 | P.2 | 0.00056 |
S | 302 | T302T | acG | acA | 2 | 2 | 0.111111 | |
S | 302 | T302T | acG | acT | 2 | 2 | A.29 | 0.010638 |
S | 302 | T302T | acG | acA | 1 | 2 | AD.2 | 0.000219 |
S | 302 | T302T | acG | acT | 1 | 2 | AD.2 | 0.000219 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.10 | 0.00106 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.113 | 0.000285 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.13 | 0.000322 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.16.1 | 0.00094 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.21 | 0.003795 |
S | 302 | T302T | acG | acT | 1 | 2 | AY.32 | 0.000532 |
S | 302 | T302T | acG | acA | 1 | 2 | AY.32 | 0.000532 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.35 | 0.000466 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.36 | 0.000296 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.37 | 0.000632 |
S | 302 | T302T | acG | acA | 1 | 2 | AY.38 | 0.000499 |
S | 302 | T302T | acG | acC | 1 | 2 | AY.38 | 0.000499 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.4.5 | 0.000215 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.46.2 | 0.001271 |
S | 302 | T302T | acG | acA | 2 | 2 | AY.5.3 | 0.000675 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.58 | 0.001815 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.60 | 0.001876 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.62 | 0.000871 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.65 | 0.001066 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.68 | 0.000547 |
S | 302 | T302T | acG | acT | 2 | 2 | AY.75.1 | 0.000361 |
S | 302 | T302T | acG | acT | 1 | 2 | AY.91 | 0.00073 |
S | 302 | T302T | acG | acA | 1 | 2 | AY.91 | 0.00073 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.1.27 | 0.011299 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.1.322 | 0.017544 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.1.37 | 0.000386 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.1.372 | 0.001377 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.1.404 | 0.031746 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.1.525 | 0.010929 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.177.12 | 0.000303 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.177.21 | 0.000153 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.177.82 | 0.000955 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.252 | 0.013245 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.258.11 | 0.000793 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.260 | 0.006689 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.311 | 0.000549 |
S | 302 | T302T | acG | acA | 2 | 2 | B.1.36.23 | 0.032787 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.396 | 0.001411 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.428 | 0.002041 |
S | 302 | T302T | acG | acA | 2 | 2 | B.1.540 | 0.019417 |
S | 302 | T302T | acG | acA | 2 | 2 | B.1.588 | 0.00182 |
S | 302 | T302T | acG | acT | 2 | 2 | B.1.633 | 0.083333 |
S | 302 | T302T | acG | acT | 2 | 2 | B.30 | 0.029412 |
S | 302 | T302T | acG | acA | 2 | 2 | C.38 | 0.016129 |
S | 302 | T302T | acG | acT | 2 | 2 | P.1.15 | 0.000465 |
S | 302 | T302T | acG | acT | 2 | 2 | P.1.16 | 0.000748 |
S | 302 | T302T | acG | acT | 2 | 2 | P.1.2 | 0.002312 |
S | 302 | T302T | acG | acT | 2 | 2 | P.1.6 | 0.003891 |
S | 302 | T302T | acG | acT | 2 | 2 | P.1.7 | 0.000639 |
S | 302 | T302T | acG | acT | 2 | 2 | Q.8 | 0.00033 |
S | 302 | T302T | acG | acT | 2 | 2 | R.1 | 0.00018 |
S | 302 | T302T | acG | acT | 1 | 1 | A.1 | 0.000282 |
S | 302 | T302T | acG | acT | 1 | 1 | A.2 | 0.000662 |
S | 302 | T302T | acG | acT | 1 | 1 | A.23.1 | 0.000704 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.1 | 0.000396 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.105 | 0.000643 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.120.1 | 0.000321 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.14 | 0.000088 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.16 | 0.00038 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.27 | 0.000065 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.30 | 0.000396 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.5.4 | 0.000277 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.51 | 0.000909 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.55 | 0.000917 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.59 | 0.00053 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.63 | 0.000387 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.64 | 0.000595 |
S | 302 | T302T | acG | acA | 1 | 1 | AY.71 | 0.000475 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.83 | 0.001724 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.87 | 0.000833 |
S | 302 | T302T | acG | acT | 1 | 1 | AY.93 | 0.000273 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.10 | 0.001115 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.139 | 0.022727 |
S | 302 | T302T | acG | acA | 1 | 1 | B.1.1.189 | 0.001513 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.231 | 0.003096 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.241 | 0.00207 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.291 | 0.000742 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.316 | 0.000925 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.318 | 0.000302 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.326 | 0.001761 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.329 | 0.003846 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.369 | 0.000446 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.39 | 0.00051 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.397 | 0.002252 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.419 | 0.007407 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.420 | 0.001006 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.446 | 0.076923 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.464 | 0.001473 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.47 | 0.005348 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.48 | 0.002874 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.512 | 0.028571 |
S | 302 | T302T | acG | acA | 1 | 1 | B.1.1.518 | 0.006329 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.55 | 0.012987 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.1.98 | 0.018519 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.113 | 0.015625 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.115 | 0.021739 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.126 | 0.001276 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.127 | 0.002198 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.160.28 | 0.002924 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.160.33 | 0.004425 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.177.4 | 0.000211 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.179 | 0.003759 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.181 | 0.019608 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.214 | 0.003663 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.234 | 0.000132 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.241 | 0.000812 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.243.2 | 0.014493 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.247 | 0.014925 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.258.17 | 0.000104 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.280 | 0.007143 |
S | 302 | T302T | acG | acA | 1 | 1 | B.1.351.2 | 0.000303 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.351.3 | 0.000876 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.356 | 0.001727 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.36.22 | 0.001208 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.36.36 | 0.000602 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.367 | 0.000792 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.369 | 0.000285 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.422 | 0.000812 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.460 | 0.017857 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.527 | 0.003704 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.544 | 0.006024 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.549 | 0.007194 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.550 | 0.013699 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.561 | 0.000397 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.564 | 0.000426 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.575 | 0.000303 |
S | 302 | T302T | acG | acT | 1 | 1 | B.1.621.1 | 0.000506 |
S | 302 | T302T | acG | acT | 1 | 1 | B.12 | 0.00641 |
S | 302 | T302T | acG | acT | 1 | 1 | B.23 | 0.002924 |
S | 302 | T302T | acG | acT | 1 | 1 | B.3 | 0.000831 |
S | 302 | T302T | acG | acT | 1 | 1 | B.3.1 | 0.001658 |
S | 302 | T302T | acG | acT | 1 | 1 | B.55 | 0.00295 |
S | 302 | T302T | acG | acT | 1 | 1 | B.6.6 | 0.000889 |
S | 302 | T302T | acG | acT | 1 | 1 | C.36.3 | 0.000567 |
S | 302 | T302T | acG | acT | 1 | 1 | N.6 | 0.007092 |
S | 302 | T302T | acG | acT | 1 | 1 | P.1.17.1 | 0.000875 |
S | 302 | T302T | acG | acT | 1 | 1 | P.1.9 | 0.004808 |
S | 302 | T302T | acG | acT | 1 | 1 | Q.3 | 0.000145 |
S | 302 | T302T | acG | acA | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|