CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T29T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S29T29TsynacTacC177517210.96957721647-21649
S29T29TsynacTacA1775500.02816921647-21649
S29T29TsynacTacG177540.0022535221647-21649

Details of the mutation T29T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S29T29TacTacC17211775All0.000329
S29T29TacTacA501775All0.00001
S29T29TacTacG41775All0.000001
S29T29TacTacC555555AY.430.002459
S29T29TacTacC549550B.1.617.20.002067
S29T29TacTacA1550B.1.617.20.000004
S29T29TacTacC6776B.1.1.70.00006
S29T29TacTacA976B.1.1.70.000008
S29T29TacTacC7171AY.440.000432
S29T29TacTacC5153AY.40.000079
S29T29TacTacA153AY.40.000002
S29T29TacTacG153AY.40.000002
S29T29TacTacC3636AY.390.00089
S29T29TacTacC3434AY.70.006664
S29T29TacTacA2729AY.260.000764
S29T29TacTacC229AY.260.000057
S29T29TacTacC2425AY.250.000144
S29T29TacTacA125AY.250.000006
S29T29TacTacC2424B.1.1.2070.028369
S29T29TacTacC2323AY.60.000946
S29T29TacTacC1415B.1.2430.000974
S29T29TacTacA115B.1.2430.00007
S29T29TacTacC1414AY.1030.000087
S29T29TacTacC1414AY.1180.000877
S29T29TacTacC1313AY.1190.000459
S29T29TacTacC1012AY.120.10.00321
S29T29TacTacG212AY.120.10.000642
S29T29TacTacC1111AY.1020.000292
S29T29TacTacC1010AY.610.001048
S29T29TacTacC99A.2.50.004491
S29T29TacTacC99AY.230.000628
S29T29TacTacC49B.10.000037
S29T29TacTacA49B.10.000037
S29T29TacTacG19B.10.000009
S29T29TacTacC88AY.1110.001465
S29T29TacTacC88AY.460.000833
S29T29TacTacC88B.1.1.330.003367
S29T29TacTacC88P.10.000126
S29T29TacTacC77AY.1170.000592
S29T29TacTacC77B.1.617.10.000903
S29T29TacTacC56B.1.1770.000066
S29T29TacTacA16B.1.1770.000013
S29T29TacTacC66B.1.177.820.002864
S29T29TacTacC66B.1.4740.011407
S29T29TacTacC55AY.470.000156
S29T29TacTacC55AY.50.000103
S29T29TacTacC55AY.530.001438
S29T29TacTacC45B.1.20.000035
S29T29TacTacA15B.1.20.000009
S29T29TacTacC55B.1.3670.003962
S29T29TacTacC34AY.420.000121
S29T29TacTacA14AY.420.00004
S29T29TacTacC44AY.450.000487
S29T29TacTacC44B.1.10.000073
S29T29TacTacC44B.1.177.690.005935
S29T29TacTacC44B.1.3510.000119
S29T29TacTacC33AY.34.10.00153
S29T29TacTacC33AY.4.50.000322
S29T29TacTacC33AY.46.60.000217
S29T29TacTacC33B.1.1.5260.010638
S29T29TacTacC22AY.1050.001286
S29T29TacTacC22AY.1060.00067
S29T29TacTacC22AY.1200.000074
S29T29TacTacC22AY.200.000078
S29T29TacTacC22AY.3.10.000171
S29T29TacTacC22AY.330.000134
S29T29TacTacC22AY.5.30.000675
S29T29TacTacC22AY.750.000112
S29T29TacTacC22AY.890.009804
S29T29TacTacC22AY.9.20.000073
S29T29TacTacC22AY.920.000575
S29T29TacTacC22AY.980.000158
S29T29TacTacC22B.1.110.30.001437
S29T29TacTacA11A.2.40.003367
S29T29TacTacC11AY.1000.000046
S29T29TacTacC11AY.1100.000113
S29T29TacTacC11AY.140.000088
S29T29TacTacC11AY.23.10.000417
S29T29TacTacC11AY.4.20.000022
S29T29TacTacC11AY.46.20.000635
S29T29TacTacC11AY.5.40.000277
S29T29TacTacC11AY.520.000814
S29T29TacTacC11AY.540.000095
S29T29TacTacC11AY.580.000907
S29T29TacTacC11AY.620.000436
S29T29TacTacC11AY.670.000464
S29T29TacTacC11AY.680.000274
S29T29TacTacC11AY.960.002075
S29T29TacTacC11B.1.1.2140.000055
S29T29TacTacC11B.1.1.250.000569
S29T29TacTacC11B.1.1.4110.014706
S29T29TacTacC11B.1.1.5190.00004
S29T29TacTacC11B.1.1420.002899
S29T29TacTacC11B.1.177.150.000631
S29T29TacTacC11B.1.177.190.001431
S29T29TacTacC11B.1.177.730.000566
S29T29TacTacC11B.1.2320.000537
S29T29TacTacA11B.1.3260.007576
S29T29TacTacC11B.1.36.310.001751
S29T29TacTacC11B.1.4000.000429
S29T29TacTacC11B.1.4290.000024
S29T29TacTacC11B.1.4330.003195
S29T29TacTacC11B.1.5610.000397
S29T29TacTacC11B.1.564.10.001577
S29T29TacTacC11C.36.30.000567
S29T29TacTacC11C.370.000116
S29T29TacTacA11D.20.000075
S29T29TacTacC11P.1.10.10.00813
S29T29TacTacC11Q.10.000126