CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T20T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S20T20TsynacCacT32402307530.94910821620-21622
S20T20TsynacCacA3240215440.047651421620-21622
S20T20TsynacCacG324021050.0032405421620-21622

Details of the mutation T20T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S20T20TacCacT3075332402All0.005882
S20T20TacCacA154432402All0.000295
S20T20TacCacG10532402All0.00002
S20T20TacCacT1599915999AY.750.896303
S20T20TacCacT38863888AY.75.10.700685
S20T20TacCacA23888AY.75.10.000361
S20T20TacCacT22652482B.1.1.70.002028
S20T20TacCacA2152482B.1.1.70.000192
S20T20TacCacG22482B.1.1.70.000002
S20T20TacCacT16961729B.1.617.20.006386
S20T20TacCacA321729B.1.617.20.00012
S20T20TacCacG11729B.1.617.20.000004
S20T20TacCacT759770B.1.4270.038328
S20T20TacCacA11770B.1.4270.000555
S20T20TacCacT679731AY.40.001057
S20T20TacCacA50731AY.40.000078
S20T20TacCacG2731AY.40.000003
S20T20TacCacA650650B.1.5240.914205
S20T20TacCacT538538AY.1050.345981
S20T20TacCacT430430AY.580.3902
S20T20TacCacT421427AY.470.013095
S20T20TacCacA6427AY.470.000187
S20T20TacCacT391425AY.1030.002428
S20T20TacCacA34425AY.1030.000211
S20T20TacCacT370406AY.250.002225
S20T20TacCacA35406AY.250.000211
S20T20TacCacG1406AY.250.000006
S20T20TacCacT191271B.1.20.001682
S20T20TacCacA60271B.1.20.000528
S20T20TacCacG20271B.1.20.000176
S20T20TacCacT141156AY.4.20.003058
S20T20TacCacA13156AY.4.20.000282
S20T20TacCacG2156AY.4.20.000043
S20T20TacCacT149155AY.420.005994
S20T20TacCacA6155AY.420.000241
S20T20TacCacT118144B.1.10.002141
S20T20TacCacA24144B.1.10.000435
S20T20TacCacG2144B.1.10.000036
S20T20TacCacT120143AY.440.00073
S20T20TacCacA21143AY.440.000128
S20T20TacCacG2143AY.440.000012
S20T20TacCacT107139AY.430.000474
S20T20TacCacA29139AY.430.000128
S20T20TacCacG3139AY.430.000013
S20T20TacCacT94127B.10.000861
S20T20TacCacA33127B.10.000302
S20T20TacCacT8989AY.690.016614
S20T20TacCacT8989B.1.5610.035331
S20T20TacCacT8080AY.1180.005012
S20T20TacCacT7070AY.510.063636
S20T20TacCacT6565B.1.258.210.503876
S20T20TacCacT5064B.1.4290.001176
S20T20TacCacA1464B.1.4290.000329
S20T20TacCacT5960AY.340.005721
S20T20TacCacA160AY.340.000097
S20T20TacCacT4959AY.390.001211
S20T20TacCacA959AY.390.000222
S20T20TacCacG159AY.390.000025
S20T20TacCacT5454B.1.1.2140.002995
S20T20TacCacT5353AY.540.005053
S20T20TacCacT5052AY.260.001416
S20T20TacCacA252AY.260.000057
S20T20TacCacT5051B.1.1.5190.001986
S20T20TacCacA151B.1.1.5190.00004
S20T20TacCacT4751B.1.1770.000619
S20T20TacCacA451B.1.1770.000053
S20T20TacCacT4949B.1.177.600.010703
S20T20TacCacG4248B.1.1.2840.004511
S20T20TacCacT648B.1.1.2840.000644
S20T20TacCacT4646B.1.1.1280.326241
S20T20TacCacT4445AY.1190.001554
S20T20TacCacA145AY.1190.000035
S20T20TacCacT2845AY.30.000278
S20T20TacCacA1545AY.30.000149
S20T20TacCacG245AY.30.00002
S20T20TacCacT4143AY.330.002738
S20T20TacCacA243AY.330.000134
S20T20TacCacA3341AY.1200.001227
S20T20TacCacT841AY.1200.000297
S20T20TacCacT4141AY.99.20.003778
S20T20TacCacT4040AY.320.021299
S20T20TacCacT3939B.1.1.280.012138
S20T20TacCacA2339B.1.6370.001681
S20T20TacCacT1639B.1.6370.001169
S20T20TacCacT3737Q.30.005366
S20T20TacCacT3434AY.850.014524
S20T20TacCacT3434B.1.1.3690.015172
S20T20TacCacT3333B.1.5180.388235
S20T20TacCacT3030B.1.3690.008557
S20T20TacCacT2229B.1.1600.000686
S20T20TacCacA729B.1.1600.000218
S20T20TacCacA2929B.1.177.100.025461
S20T20TacCacA2529B.1.258.170.002599
S20T20TacCacT429B.1.258.170.000416
S20T20TacCacT2626AY.700.005421
S20T20TacCacT2626B.1.2210.001847
S20T20TacCacT2424AD.20.005255
S20T20TacCacT2424B.1.3510.000713
S20T20TacCacT1824B.1.6210.001593
S20T20TacCacA624B.1.6210.000531
S20T20TacCacT2223AY.620.009586
S20T20TacCacA123AY.620.000436
S20T20TacCacT1823AY.9.20.000661
S20T20TacCacA523AY.9.20.000184
S20T20TacCacT2223B.1.5260.000517
S20T20TacCacG123B.1.5260.000024
S20T20TacCacA1222C.370.001393
S20T20TacCacT1022C.370.001161
S20T20TacCacT2121AY.5.40.005811
S20T20TacCacT2121B.1.2340.002771
S20T20TacCacT2020AY.200.000777
S20T20TacCacT2020B.1.2430.001392
S20T20TacCacT1919B.1.1.2180.146154
S20T20TacCacT1818B.1.1.2220.003672
S20T20TacCacT1818B.1.2060.014682
S20T20TacCacT1718B.1.2400.003665
S20T20TacCacG118B.1.2400.000216
S20T20TacCacT1717AY.98.10.000823
S20T20TacCacT1516AY.39.10.000594
S20T20TacCacA116AY.39.10.00004
S20T20TacCacT1315AY.230.000907
S20T20TacCacA215AY.230.000139
S20T20TacCacT1515AY.740.001735
S20T20TacCacT1015B.1.2580.000665
S20T20TacCacA515B.1.2580.000333
S20T20TacCacT1414AY.1170.001183
S20T20TacCacT1414AY.240.006034
S20T20TacCacT1414B.1.1.4860.022082
S20T20TacCacT1414B.1.177.180.016241
S20T20TacCacT1414B.1.5170.005978
S20T20TacCacA1414B.6.60.012444
S20T20TacCacT1313AY.46.60.000939
S20T20TacCacT1213P.20.00224
S20T20TacCacA113P.20.000187
S20T20TacCacT1212B.1.4970.003777
S20T20TacCacT1111AU.30.023207
S20T20TacCacT1111AY.930.003004
S20T20TacCacA811B.1.1.2160.007124
S20T20TacCacT311B.1.1.2160.002671
S20T20TacCacT1111B.1.177.210.000841
S20T20TacCacT711B.1.5960.00061
S20T20TacCacA311B.1.5960.000261
S20T20TacCacG111B.1.5960.000087
S20T20TacCacT1111B.1.617.10.001419
S20T20TacCacT610AY.1000.000276
S20T20TacCacA410AY.1000.000184
S20T20TacCacG1010AY.410.002939
S20T20TacCacT1010B.1.5820.004907
S20T20TacCacT89AY.610.000838
S20T20TacCacA19AY.610.000105
S20T20TacCacT89B.1.466.20.00313
S20T20TacCacA19B.1.466.20.000391
S20T20TacCacT99P.50.123288
S20T20TacCacT59Q.80.000825
S20T20TacCacA39Q.80.000495
S20T20TacCacG19Q.80.000165
S20T20TacCacT68AY.450.00073
S20T20TacCacA28AY.450.000243
S20T20TacCacT88B.1.1.4340.002788
S20T20TacCacT78B.1.214.20.004197
S20T20TacCacA18B.1.214.20.0006
S20T20TacCacT78B.1.360.001021
S20T20TacCacA18B.1.360.000146
S20T20TacCacT88D.20.0006
S20T20TacCacT88Q.10.001011
S20T20TacCacA67AY.1210.000812
S20T20TacCacT17AY.1210.000135
S20T20TacCacT77B0.000895
S20T20TacCacT77B.1.1.4580.291667
S20T20TacCacG77B.1.1.4640.010309
S20T20TacCacT77B.1.930.006536
S20T20TacCacT66A.2.50.002994
S20T20TacCacT66AY.1080.006615
S20T20TacCacA46AY.9.10.000335
S20T20TacCacT26AY.9.10.000167
S20T20TacCacT66AY.980.000474
S20T20TacCacA66B.1.1.2530.015038
S20T20TacCacT66B.1.1.2980.005172
S20T20TacCacA56B.1.1.3160.004625
S20T20TacCacT16B.1.1.3160.000925
S20T20TacCacT66B.1.3970.029126
S20T20TacCacT66B.1.5670.02
S20T20TacCacT56B.1.5950.001305
S20T20TacCacG16B.1.5950.000261
S20T20TacCacA45AY.270.000259
S20T20TacCacT15AY.270.000065
S20T20TacCacT35AY.60.000123
S20T20TacCacA25AY.60.000082
S20T20TacCacT55B.1.1.10.001633
S20T20TacCacT55B.1.1.2280.015244
S20T20TacCacT55B.1.1.2310.01548
S20T20TacCacT55B.1.1.3170.002058
S20T20TacCacT35B.1.1.700.001023
S20T20TacCacA25B.1.1.700.000682
S20T20TacCacT55B.1.177.560.003338
S20T20TacCacT45B.1.177.750.004162
S20T20TacCacA15B.1.177.750.001041
S20T20TacCacT55B.1.1920.046296
S20T20TacCacT55B.1.3670.003962
S20T20TacCacT55B.1.5750.001517
S20T20TacCacT55B.1.6000.02924
S20T20TacCacT34A.23.10.002113
S20T20TacCacA14A.23.10.000704
S20T20TacCacA34AY.1020.00008
S20T20TacCacT14AY.1020.000027
S20T20TacCacT44AY.670.001857
S20T20TacCacT44AY.730.002661
S20T20TacCacT44B.1.1.1700.004988
S20T20TacCacT34B.1.1.330.001263
S20T20TacCacA14B.1.1.330.000421
S20T20TacCacT34B.1.177.70.000495
S20T20TacCacA14B.1.177.70.000165
S20T20TacCacT44B.1.177.810.000757
S20T20TacCacT44B.1.177.870.002911
S20T20TacCacA34B.1.351.20.000908
S20T20TacCacT14B.1.351.20.000303
S20T20TacCacA44B.1.36.10.004561
S20T20TacCacT44B.1.36.170.001976
S20T20TacCacT44B.1.36.290.002069
S20T20TacCacT44B.1.5430.04
S20T20TacCacT44B.1.5510.005161
S20T20TacCacT44B.1.5640.001704
S20T20TacCacT44L.30.014184
S20T20TacCacT44Q.70.004444
S20T20TacCacT33A.20.001985
S20T20TacCacA33AY.3.10.000256
S20T20TacCacA33AY.360.000445
S20T20TacCacT33AY.4.10.002212
S20T20TacCacT33AY.4.50.000322
S20T20TacCacA23AY.50.000041
S20T20TacCacG13AY.50.000021
S20T20TacCacT23AY.90.000135
S20T20TacCacG13AY.90.000068
S20T20TacCacA23B.1.1.2770.001517
S20T20TacCacT13B.1.1.2770.000759
S20T20TacCacT33B.1.1.3480.002389
S20T20TacCacT33B.1.1.4090.008499
S20T20TacCacT33B.1.1.4160.002715
S20T20TacCacT33B.1.110.30.002155
S20T20TacCacT23B.1.160.160.001859
S20T20TacCacA13B.1.160.160.000929
S20T20TacCacT33B.1.177.830.004444
S20T20TacCacT33B.1.5250.000339
S20T20TacCacA12AY.1060.000335
S20T20TacCacT12AY.1060.000335
S20T20TacCacA12AY.1090.00074
S20T20TacCacT12AY.1090.00074
S20T20TacCacT22AY.1110.000366
S20T20TacCacA22AY.1160.000574
S20T20TacCacT22AY.120.10.000642
S20T20TacCacT22AY.300.000791
S20T20TacCacT22AY.350.000466
S20T20TacCacT22AY.39.20.003082
S20T20TacCacA12AY.460.000104
S20T20TacCacT12AY.460.000104
S20T20TacCacT22AY.46.20.001271
S20T20TacCacT22AY.46.50.000397
S20T20TacCacA22AY.600.001876
S20T20TacCacT22AY.910.001461
S20T20TacCacT22B.1.1.2730.013514
S20T20TacCacT22B.1.1.3180.000604
S20T20TacCacT22B.1.1.390.001019
S20T20TacCacT22B.1.1.630.000772
S20T20TacCacT22B.1.1180.013423
S20T20TacCacT22B.1.1260.002551
S20T20TacCacT12B.1.1570.002985
S20T20TacCacA12B.1.1570.002985
S20T20TacCacT22B.1.160.80.002577
S20T20TacCacT22B.1.177.150.001262
S20T20TacCacG12B.1.177.330.001645
S20T20TacCacT12B.1.177.330.001645
S20T20TacCacT22B.1.177.570.000562
S20T20TacCacT22B.1.177.860.000367
S20T20TacCacT22B.1.220.002635
S20T20TacCacT22B.1.2320.001075
S20T20TacCacT22B.1.3130.013158
S20T20TacCacT22B.1.36.180.00084
S20T20TacCacA12B.1.3910.001127
S20T20TacCacT12B.1.3910.001127
S20T20TacCacT22B.1.3960.001411
S20T20TacCacT22B.1.466.10.014388
S20T20TacCacT22B.1.4680.011429
S20T20TacCacT22B.1.4700.002809
S20T20TacCacT22B.1.5490.014388
S20T20TacCacT22B.1.5650.001621
S20T20TacCacT22B.1.5760.001813
S20T20TacCacT22B.1.6230.001073
S20T20TacCacT22B.400.000729
S20T20TacCacT22P.10.000032
S20T20TacCacT22Q.40.00091
S20T20TacCacT22Y.10.025641
S20T20TacCacT11A.270.001656
S20T20TacCacT11AU.10.001266
S20T20TacCacT11AY.100.00053
S20T20TacCacA11AY.1130.000142
S20T20TacCacT11AY.1140.000231
S20T20TacCacT11AY.120.20.001285
S20T20TacCacA11AY.120.2.10.000498
S20T20TacCacT11AY.130.000161
S20T20TacCacT11AY.160.00038
S20T20TacCacT11AY.190.00114
S20T20TacCacT11AY.23.10.000417
S20T20TacCacT11AY.290.000016
S20T20TacCacA11AY.39.1.10.000725
S20T20TacCacT11AY.4.2.10.000149
S20T20TacCacT11AY.46.10.001027
S20T20TacCacT11AY.46.40.000165
S20T20TacCacA11AY.5.30.000337
S20T20TacCacT11AY.520.000814
S20T20TacCacA11AY.530.000288
S20T20TacCacT11AY.650.000533
S20T20TacCacA11AY.660.00107
S20T20TacCacT11AY.680.000274
S20T20TacCacT11AY.7.10.000113
S20T20TacCacA11AY.840.000437
S20T20TacCacA11AY.880.000884
S20T20TacCacT11AY.920.000287
S20T20TacCacT11AY.960.002075
S20T20TacCacT11B.1.1.1410.002012
S20T20TacCacT11B.1.1.150.013514
S20T20TacCacA11B.1.1.1570.000913
S20T20TacCacA11B.1.1.1610.003534
S20T20TacCacT11B.1.1.1740.003378
S20T20TacCacA11B.1.1.1890.001513
S20T20TacCacT11B.1.1.1970.037037
S20T20TacCacT11B.1.1.2040.00304
S20T20TacCacT11B.1.1.2340.012048
S20T20TacCacT11B.1.1.2410.00207
S20T20TacCacT11B.1.1.250.000569
S20T20TacCacT11B.1.1.2630.001558
S20T20TacCacT11B.1.1.2940.001266
S20T20TacCacA11B.1.1.3060.000438
S20T20TacCacT11B.1.1.3150.008475
S20T20TacCacT11B.1.1.3230.014085
S20T20TacCacT11B.1.1.3490.010309
S20T20TacCacT11B.1.1.370.000193
S20T20TacCacT11B.1.1.3710.010417
S20T20TacCacT11B.1.1.3760.005952
S20T20TacCacT11B.1.1.3790.03125
S20T20TacCacT11B.1.1.3880.045455
S20T20TacCacT11B.1.1.3890.006061
S20T20TacCacT11B.1.1.3970.002252
S20T20TacCacT11B.1.1.4130.006897
S20T20TacCacT11B.1.1.4200.001006
S20T20TacCacT11B.1.1.4330.001425
S20T20TacCacT11B.1.1.440.00241
S20T20TacCacT11B.1.1.4480.002033
S20T20TacCacT11B.1.1.490.017544
S20T20TacCacT11B.1.1.510.001718
S20T20TacCacA11B.1.1.5180.006329
S20T20TacCacA11B.1.1.590.006494
S20T20TacCacT11B.1.1.610.008772
S20T20TacCacA11B.1.1.80.003584
S20T20TacCacT11B.1.1110.001175
S20T20TacCacT11B.1.120.008
S20T20TacCacT11B.1.1390.000733
S20T20TacCacT11B.1.160.280.002924
S20T20TacCacT11B.1.1620.005025
S20T20TacCacA11B.1.177.390.015385
S20T20TacCacT11B.1.177.430.001477
S20T20TacCacT11B.1.177.450.000381
S20T20TacCacT11B.1.177.530.002392
S20T20TacCacT11B.1.177.540.000606
S20T20TacCacT11B.1.177.690.001484
S20T20TacCacT11B.1.2350.002519
S20T20TacCacT11B.1.2410.000812
S20T20TacCacT11B.1.258.110.000396
S20T20TacCacT11B.1.2600.003344
S20T20TacCacT11B.1.3050.002151
S20T20TacCacA11B.1.3110.000275
S20T20TacCacT11B.1.3500.002933
S20T20TacCacA11B.1.351.30.000876
S20T20TacCacA11B.1.36.160.001425
S20T20TacCacT11B.1.36.220.001208
S20T20TacCacA11B.1.36.380.001642
S20T20TacCacT11B.1.36.390.002217
S20T20TacCacA11B.1.3620.001541
S20T20TacCacT11B.1.4090.000781
S20T20TacCacA11B.1.416.10.001563
S20T20TacCacT11B.1.4250.002994
S20T20TacCacT11B.1.4260.001009
S20T20TacCacT11B.1.438.10.000107
S20T20TacCacT11B.1.5460.003704
S20T20TacCacT11B.1.5600.00463
S20T20TacCacT11B.1.5680.001111
S20T20TacCacT11B.1.5770.000687
S20T20TacCacT11B.1.5970.00463
S20T20TacCacT11B.1.6120.002653
S20T20TacCacT11B.1.619.10.000641
S20T20TacCacT11B.1.6250.002353
S20T20TacCacT11B.1.6310.003367
S20T20TacCacT11B.1.780.008547
S20T20TacCacT11B.1.80.001972
S20T20TacCacT11B.1.9.40.006135
S20T20TacCacT11B.230.002924
S20T20TacCacT11B.30.000831
S20T20TacCacT11B.390.002331
S20T20TacCacT11C.10.002392
S20T20TacCacT11C.360.000911
S20T20TacCacT11C.36.30.000567
S20T20TacCacT11N.100.029412
S20T20TacCacA11P.30.001595
S20T20TacCacT11R.10.00009
S20T20TacCacT11U.20.008772