CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T20S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S20T20SnonsynaCcaGc1351170.86666721620-21622
S20T20SnonsynAccTcc135170.12592621620-21622
S20T20SnonsynAcCTcT13510.0074074121620-21622

Details of the mutation T20S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S20T20SaCcaGc117135All0.000022
S20T20SAccTcc17135All0.000003
S20T20SAcCTcT1135All0
S20T20SaCcaGc9494C.370.01091
S20T20SAccTcc77B.1.20.000062
S20T20SaCcaGc55B.1.177.810.000947
S20T20SaCcaGc44AY.850.001709
S20T20SaCcaGc44P.10.000063
S20T20SaCcaGc13B.1.1.70.000001
S20T20SAccTcc13B.1.1.70.000001
S20T20SAcCTcT13B.1.1.70.000001
S20T20SaCcaGc12AY.440.000006
S20T20SAccTcc12AY.440.000006
S20T20SAccTcc12B.1.10.000018
S20T20SaCcaGc12B.1.10.000018
S20T20SaCcaGc11AY.1030.000006
S20T20SaCcaGc11AY.120.10.000321
S20T20SaCcaGc11AY.260.000028
S20T20SAccTcc11AY.50.000021
S20T20SAccTcc11AY.780.001541
S20T20SAccTcc11B0.000128
S20T20SAccTcc11B.10.000009
S20T20SAccTcc11B.1.110.30.000718
S20T20SaCcaGc11B.1.177.500.004695
S20T20SAccTcc11B.1.2210.000071
S20T20SaCcaGc11B.1.3510.00003
S20T20SaCcaGc11B.1.4290.000024
S20T20SAccTcc11B.1.617.20.000004
S20T20SaCcaGc11P.1.170.000162