CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T19T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S19T19TsynacAacT93520.5591421617-21619
S19T19TsynacAacG93380.40860221617-21619
S19T19TsynacAacC9330.032258121617-21619

Details of the mutation T19T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S19T19TacAacT5293All0.00001
S19T19TacAacG3893All0.000007
S19T19TacAacC393All0.000001
S19T19TacAacT917B.1.1.70.000008
S19T19TacAacG717B.1.1.70.000006
S19T19TacAacC117B.1.1.70.000001
S19T19TacAacG1515P.20.0028
S19T19TacAacT66B.1.1770.000079
S19T19TacAacT66B.1.177.440.003114
S19T19TacAacT66B.1.20.000053
S19T19TacAacT46P.10.000063
S19T19TacAacG26P.10.000032
S19T19TacAacG24B.10.000018
S19T19TacAacT24B.10.000018
S19T19TacAacT44B.1.3510.000119
S19T19TacAacC13B.1.10.000018
S19T19TacAacG13B.1.10.000018
S19T19TacAacT13B.1.10.000018
S19T19TacAacT22B.1.1.4320.002532
S19T19TacAacT22B.1.1.5260.007092
S19T19TacAacG22B.1.177.230.006472
S19T19TacAacT22B.1.4800.004975
S19T19TacAacT12B.1.5260.000024
S19T19TacAacC12B.1.5260.000024
S19T19TacAacG22B.1.5940.0625
S19T19TacAacG11B.1.1.3560.008547
S19T19TacAacT11B.1.1.4370.010417
S19T19TacAacG11B.1.1.5230.001563
S19T19TacAacG11B.1.1.630.000386
S19T19TacAacG11B.1.1470.000756
S19T19TacAacG11B.1.2340.000132
S19T19TacAacT11B.1.2580.000067
S19T19TacAacG11B.1.4290.000024
S19T19TacAacT11B.1.466.20.000391
S19T19TacAacT11B.1.5750.000303
S19T19TacAacT11B.1.5960.000087
S19T19TacAacG11B.1.6210.000089
S19T19TacAacT11Q.80.000165
S19T19TacAacT11R.10.00009