CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T19S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S19T19SnonsynaCAaGC93400.43010821617-21619
S19T19SnonsynaCAaGT93310.33333321617-21619
S19T19SnonsynAcaTca93220.23655921617-21619

Details of the mutation T19S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S19T19SaCAaGC4093All0.000008
S19T19SaCAaGT3193All0.000006
S19T19SAcaTca2293All0.000004
S19T19SaCAaGC1717AY.98.10.000823
S19T19SaCAaGT68AY.250.000036
S19T19SaCAaGC28AY.250.000012
S19T19SAcaTca88B.1.2430.000557
S19T19SaCAaGC77AY.40.000011
S19T19SaCAaGT47B.1.617.20.000015
S19T19SaCAaGC37B.1.617.20.000011
S19T19SaCAaGT36AY.430.000013
S19T19SaCAaGC36AY.430.000013
S19T19SaCAaGC44AY.30.00004
S19T19SAcaTca44B.1.20.000035
S19T19SaCAaGT33AY.1130.000427
S19T19SaCAaGT23AY.440.000012
S19T19SaCAaGC13AY.440.000006
S19T19SaCAaGT33AY.60.000123
S19T19SaCAaGT33AY.7.10.000338
S19T19SaCAaGT12AY.390.000025
S19T19SaCAaGC12AY.390.000025
S19T19SaCAaGT22AY.4.20.000043
S19T19SaCAaGT22AY.470.000062
S19T19SAcaTca22B.10.000018
S19T19SAcaTca22B.1.4290.000047
S19T19SAcaTca11A0.000387
S19T19SaCAaGC11AY.1030.000006
S19T19SaCAaGC11AY.1170.000085
S19T19SaCAaGT11AY.480.000465
S19T19SaCAaGT11AY.940.000443
S19T19SAcaTca11B.1.1770.000013
S19T19SAcaTca11B.1.2580.000067
S19T19SAcaTca11B.1.4270.00005
S19T19SAcaTca11B.1.5250.000113
S19T19SAcaTca11C.370.000116