CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T19R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S19T19RnonsynaCaaGa271910927190650.99998421617-21619
S19T19RnonsynaCAaGG2719109350.000012871921617-21619
S19T19RnonsynACaCGa271910990.0000033099121617-21619

Details of the mutation T19R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S19T19RaCaaGa27190652719109All0.520053
S19T19RaCAaGG352719109All0.000007
S19T19RACaCGa92719109All0.000002
S19T19RaCaaGa642163642170AY.40.999477
S19T19RaCAaGG4642170AY.40.000006
S19T19RACaCGa3642170AY.40.000005
S19T19RaCaaGa262667262676B.1.617.20.98905
S19T19RaCAaGG9262676B.1.617.20.000034
S19T19RaCaaGa222270222272AY.430.984759
S19T19RaCAaGG2222272AY.430.000009
S19T19RaCaaGa163799163804AY.250.985222
S19T19RaCAaGG5163804AY.250.00003
S19T19RaCaaGa160091160092AY.440.974436
S19T19RaCAaGG1160092AY.440.000006
S19T19RaCaaGa158409158411AY.1030.983571
S19T19RACaCGa1158411AY.1030.000006
S19T19RaCAaGG1158411AY.1030.000006
S19T19RaCaaGa9915899158AY.30.986264
S19T19RaCaaGa6332063320AY.290.998785
S19T19RaCaaGa4796947969AY.50.990522
S19T19RaCaaGa4605846058AY.4.20.998937
S19T19RaCaaGa3771637716AY.390.932019
S19T19RaCaaGa3751837518AY.1020.99475
S19T19RaCaaGa3479234792AY.260.984967
S19T19RaCaaGa3175431754AY.470.987713
S19T19RaCaaGa2788227882AY.1190.984464
S19T19RaCaaGa2677626776AY.1200.995501
S19T19RaCaaGa2673126731AY.9.20.981819
S19T19RaCaaGa2534525345AY.200.985037
S19T19RaCaaGa2476024760AY.39.10.980827
S19T19RaCaaGa2420724207AY.60.995599
S19T19RaCaaGa2356023561AY.420.947822
S19T19RaCAaGG123561AY.420.00004
S19T19RaCaaGa2127721277AY.1000.978883
S19T19RaCaaGa2039120392AY.98.10.987553
S19T19RaCAaGG120392AY.98.10.000048
S19T19RaCaaGa1693616936AY.750.948796
S19T19RaCaaGa1570515705AY.1180.983899
S19T19RaCaaGa1544015440AY.270.999288
S19T19RaCaaGa1472114721AY.90.995066
S19T19RaCaaGa1470214702AY.330.98177
S19T19RaCaaGa1378513785AY.230.961498
S19T19RaCaaGa1363513635AY.46.60.984548
S19T19RaCaaGa1185011850AY.9.10.99213
S19T19RaCaaGa1173411735AY.980.926929
S19T19RaCAaGG111735AY.980.000079
S19T19RaCaaGa1161111616AY.3.10.989939
S19T19RaCAaGG511616AY.3.10.000426
S19T19RaCaaGa1153411534AY.1170.974814
S19T19RaCaaGa1122111221AY.140.98759
S19T19RaCaaGa1068710687AY.99.20.984886
S19T19RaCaaGa1025910263AY.540.978166
S19T19RACaCGa410263AY.540.000381
S19T19RaCaaGa1023010230AY.340.991952
S19T19RaCaaGa94159415AY.610.986484
S19T19RaCaaGa93179317AY.460.969713
S19T19RaCaaGa91719171AY.4.50.985811
S19T19RaCaaGa88208820AY.1100.993915
S19T19RaCaaGa88008800AY.7.10.991773
S19T19RaCaaGa86328632AY.740.998265
S19T19RaCaaGa78567856AY.450.95595
S19T19RaCaaGa72517251AY.1210.981191
S19T19RaCaaGa69196919AY.1130.985192
S19T19RaCaaGa67016701AY.4.2.10.998361
S19T19RaCaaGa66426643AY.360.984438
S19T19RaCAaGG16643AY.360.000148
S19T19RaCaaGa60426042AY.130.972634
S19T19RaCaaGa60396039AY.46.40.99342
S19T19RaCaaGa54055405AY.1110.989927
S19T19RaCaaGa53425342AY.690.9972
S19T19RaCaaGa51535153AY.75.10.929138
S19T19RaCaaGa50665066AY.70.992944
S19T19RaCaaGa50335033AY.46.50.998611
S19T19RaCaaGa47694769AY.700.99437
S19T19RaCaaGa45344534AY.29.10.999779
S19T19RaCaaGa42444244AY.350.989047
S19T19RaCaaGa42374237AY.1140.9792
S19T19RaCaaGa36573657AY.930.998635
S19T19RaCaaGa35653565AY.5.40.986442
S19T19RaCaaGa34363436AY.1160.985374
S19T19RaCaaGa34233423AY.530.984186
S19T19RaCaaGa34053405AY.680.932111
S19T19RaCaaGa33623362AY.410.988242
S19T19RaCaaGa31713171AY.920.910945
S19T19RaCaaGa31483148AY.116.10.98038
S19T19RaCaaGa31103110AY.370.982933
S19T19RaCaaGa30383038AY.120.10.975281
S19T19RaCaaGa29292929AY.1060.980911
S19T19RaCaaGa29192919AY.120.922566
S19T19RaCaaGa27942794AY.5.30.942645
S19T19RaCaaGa27612761AY.20.983262
S19T19RaCaaGa25812581AY.630.998453
S19T19RaCaaGa25472547AY.160.96697
S19T19RaCaaGa24662466AY.300.975861
S19T19RaCaaGa24642464AY.10.975069
S19T19RaCaaGa24252425AY.4.40.992226
S19T19RaCaaGa23792379AY.23.10.992905
S19T19RaCaaGa22942294AY.850.979923
S19T19RaCaaGa22722272AY.240.97931
S19T19RaCaaGa22452245AY.620.978214
S19T19RaCaaGa22312231AY.940.987605
S19T19RaCaaGa22062206AY.840.965004
S19T19RaCaaGa21072107AY.480.98
S19T19RaCaaGa21042104AY.1070.980429
S19T19RaCaaGa20892089AY.670.969824
S19T19RaCaaGa20892089AY.710.992399
S19T19RaCaaGa19951995AY.120.2.10.994021
S19T19RaCaaGa19871987AY.1010.974497
S19T19RaCaaGa19171917AY.380.957064
S19T19RaCaaGa18781878AY.100.995231
S19T19RaCaaGa18751875AY.34.10.956145
S19T19RaCaaGa18671867AY.16.10.87735
S19T19RaCaaGa18441844AY.320.981896
S19T19RaCaaGa18361841AY.590.972458
S19T19RaCAaGG41841AY.590.002119
S19T19RACaCGa11841AY.590.00053
S19T19RaCaaGa17701770AY.7.20.989933
S19T19RaCaaGa17681768B.10.016194
S19T19RaCaaGa17231723AY.650.918443
S19T19RaCaaGa16531653AY.640.983929
S19T19RaCaaGa16431643AY.80.995758
S19T19RaCaaGa15671567AY.46.20.995553
S19T19RaCaaGa15441544AY.1050.992926
S19T19RaCaaGa15171517AY.570.995407
S19T19RaCaaGa14781478AY.730.983367
S19T19RaCaaGa14551455AY.900.995893
S19T19RaCaaGa13791379AY.39.1.10.999275
S19T19RaCaaGa13521352AY.4.10.99705
S19T19RaCaaGa13191319AY.1090.975592
S19T19RaCaaGa13081308AY.910.955442
S19T19RaCaaGa12521252AY.950.952816
S19T19RaCaaGa12451245AY.500.995204
S19T19RaCaaGa11901190AY.860.987552
S19T19RaCaaGa11891189AY.870.990008
S19T19RaCaaGa11171117AY.4.30.940236
S19T19RaCaaGa11091109AY.880.980548
S19T19RaCaaGa10941094AY.510.994545
S19T19RaCaaGa10831083AY.580.982759
S19T19RaCaaGa10771077AY.550.988073
S19T19RaCaaGa10571057AY.46.30.986928
S19T19RaCaaGa10491049AY.600.984053
S19T19RaCaaGa987987AY.400.951784
S19T19RaCaaGa948948AY.46.10.973306
S19T19RaCaaGa930930AY.520.757329
S19T19RaCaaGa924924AY.660.988235
S19T19RaCaaGa908908AY.990.952781
S19T19RaCaaGa884884AY.800.997743
S19T19RaCaaGa877877AY.1080.966924
S19T19RaCaaGa870870AY.770.980834
S19T19RaCaaGa854854AY.190.973774
S19T19RaCaaGa818818AY.790.990315
S19T19RaCaaGa744744AY.110.995984
S19T19RaCaaGa725725AY.720.986395
S19T19RaCaaGa719719AY.820.975577
S19T19RaCaaGa668668AY.120.20.858612
S19T19RaCaaGa644644AY.39.20.992296
S19T19RaCaaGa637637AY.780.98151
S19T19RaCaaGa636636AY.99.10.987578
S19T19RaCaaGa609609AY.560.977528
S19T19RaCaaGa575575AY.970.977891
S19T19RaCaaGa572572AY.830.986207
S19T19RaCaaGa522522AY.280.986767
S19T19RaCaaGa515515AY.210.97723
S19T19RaCaaGa506506AY.9.2.11
S19T19RaCaaGa497497AY.1040.986111
S19T19RaCaaGa490490AY.810.976096
S19T19RaCaaGa471471AY.220.985356
S19T19RaCaaGa450450AY.151
S19T19RaCaaGa436436AY.960.904564
S19T19RaCaaGa404404AY.5.20.995074
S19T19RaCaaGa325325B.1.617.30.970149
S19T19RaCaaGa300300AY.490.958466
S19T19RaCaaGa266266AY.5.11
S19T19RaCaaGa246246AY.91.11
S19T19RaCaaGa206206AY.760.995169
S19T19RaCaaGa202202AY.890.990196
S19T19RaCaaGa185185AY.1150.963542
S19T19RaCaaGa141141B0.018021
S19T19RaCaaGa122122AY.171
S19T19RaCaaGa9999AY.181
S19T19RaCaaGa6262B.1.1.3740.147268
S19T19RaCaaGa6161B.1.1.70.000055
S19T19RaCaaGa6060B.1.10.001088
S19T19RaCaaGa5454AY.311
S19T19RaCaaGa4747B.1.20.000414
S19T19RaCaaGa4646B.1.5960.004008
S19T19RaCaaGa4343B.1.1.4110.632353
S19T19RaCaaGa3232P.1.120.015489
S19T19RaCaaGa3030B.1.2140.10989
S19T19RaCaaGa3030B.1.617.10.003869
S19T19RaCaaGa1616B.1.5760.014506
S19T19RaCaaGa1313B.1.3510.000386
S19T19RaCaaGa1313B.1.5950.003392
S19T19RaCaaGa1212P.10.000189
S19T19RaCaaGa1111B.1.177.730.006229
S19T19RaCaaGa1010B.1.5250.001132
S19T19RaCaaGa1010B.1.6280.003524
S19T19RaCaaGa88B.1.1770.000105
S19T19RaCaaGa88B.1.6210.000708
S19T19RaCaaGa66B.1.3690.001711
S19T19RaCaaGa66B.1.4740.011407
S19T19RaCaaGa66B.1.6230.003219
S19T19RaCaaGa66P.1.10.001906
S19T19RaCaaGa66P.1.170.000971
S19T19RaCaaGa55B.1.1.3170.002058
S19T19RaCaaGa55B.1.1600.000156
S19T19RaCaaGa55B.1.3750.004098
S19T19RaCaaGa44A0.001548
S19T19RaCaaGa44B.1.1570.01194
S19T19RaCaaGa44B.1.360.000584
S19T19RaCaaGa44C.37.10.010471
S19T19RaCaaGa330.166667
S19T19RaCaaGa33AU.30.006329
S19T19RaCaaGa33B.1.1.1610.010601
S19T19RaCaaGa33B.1.1.2940.003797
S19T19RaCaaGa33B.1.1.4320.003797
S19T19RaCaaGa33B.1.1.5230.004687
S19T19RaCaaGa33B.1.2430.000209
S19T19RaCaaGa33B.1.3490.002144
S19T19RaCaaGa33B.1.5800.012195
S19T19RaCaaGa33B.1.6040.051724
S19T19RaCaaGa33P.1.130.002695
S19T19RaCaaGa33P.1.70.000958
S19T19RaCaaGa22B.1.1430.042553
S19T19RaCaaGa22B.1.1700.008621
S19T19RaCaaGa22B.1.3350.020619
S19T19RaCaaGa22B.1.36.290.001035
S19T19RaCaaGa22B.1.4290.000047
S19T19RaCaaGa22B.1.4320.022472
S19T19RaCaaGa22B.1.4330.00639
S19T19RaCaaGa22B.1.4850.029851
S19T19RaCaaGa22B.1.5260.000047
S19T19RaCaaGa22B.1.5300.014286
S19T19RaCaaGa22B.1.6190.001742
S19T19RaCaaGa22B.1.6290.026667
S19T19RaCaaGa22B.1.6370.000146
S19T19RaCaaGa22B.550.0059
S19T19RaCaaGa22C.36.3.10.005435
S19T19RaCaaGa22C.370.000232
S19T19RaCaaGa22P.1.100.000539
S19T19RaCaaGa22P.20.000373
S19T19RaCaaGa11A.20.000662
S19T19RaCaaGa11A.2.50.000499
S19T19RaCaaGa11AT.10.005128
S19T19RaCaaGa11B.1.1.1210.002427
S19T19RaCaaGa11B.1.1.2540.011236
S19T19RaCaaGa11B.1.1.280.000311
S19T19RaCaaGa11B.1.1.2910.000742
S19T19RaCaaGa11B.1.1.3260.001761
S19T19RaCaaGa11B.1.1.5120.028571
S19T19RaCaaGa11B.1.1.5190.00004
S19T19RaCaaGa11B.1.1.5260.003546
S19T19RaCaaGa11B.1.110.30.000718
S19T19RaCaaGa11B.1.1310.008772
S19T19RaCaaGa11B.1.1420.002899
S19T19RaCaaGa11B.1.160.160.000929
S19T19RaCaaGa11B.1.1790.003759
S19T19RaCaaGa11B.1.2210.000071
S19T19RaCaaGa11B.1.2470.014925
S19T19RaCaaGa11B.1.2580.000067
S19T19RaCaaGa11B.1.3010.005917
S19T19RaCaaGa11B.1.3250.006897
S19T19RaCaaGa11B.1.3550.011111
S19T19RaCaaGa11B.1.3660.004878
S19T19RaCaaGa11B.1.3670.000792
S19T19RaCaaGa11B.1.3800.006623
S19T19RaCaaGa11B.1.3970.004854
S19T19RaCaaGa11B.1.4270.00005
S19T19RaCaaGa11B.1.4360.001029
S19T19RaCaaGa11B.1.4590.004082
S19T19RaCaaGa11B.1.4620.007246
S19T19RaCaaGa11B.1.466.20.000391
S19T19RaCaaGa11B.1.4970.000315
S19T19RaCaaGa11B.1.5380.008065
S19T19RaCaaGa11B.1.5640.000426
S19T19RaCaaGa11B.1.5710.009709
S19T19RaCaaGa11B.1.5730.006098
S19T19RaCaaGa11B.1.575.20.004808
S19T19RaCaaGa11B.1.5810.009434
S19T19RaCaaGa11B.1.6090.000479
S19T19RaCaaGa11B.1.6200.000946
S19T19RaCaaGa11B.1.621.10.000506
S19T19RaCaaGa11B.1.6300.005236
S19T19RaCaaGa11B.1.6310.003367
S19T19RaCaaGa11B.1.700.02439
S19T19RaCaaGa11B.1.810.021277
S19T19RaCaaGa11B.400.000364
S19T19RaCaaGa11C.36.30.000567
S19T19RaCaaGa11P.1.10.10.00813
S19T19RaCaaGa11P.1.160.000374