CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T19I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S19T19InonsynaCaaTa385138480.99922121617-21619
S19T19InonsynaCAaTT385120.00051934621617-21619
S19T19InonsynaCAaTC385110.00025967321617-21619

Details of the mutation T19I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S19T19IaCaaTa38483851All0.000736
S19T19IaCAaTT23851All0
S19T19IaCAaTC13851All0
S19T19IaCaaTa11741175B.1.1.70.001051
S19T19IaCAaTT11175B.1.1.70.000001
S19T19IaCaaTa10431043B.1.3510.031005
S19T19IaCaaTa156156AY.40.000243
S19T19IaCaaTa7979AY.430.00035
S19T19IaCaaTa6969AY.1030.000428
S19T19IaCaaTa5858P.10.000914
S19T19IaCaaTa5656B.1.6350.982456
S19T19IaCaaTa5252AY.440.000317
S19T19IaCaaTa5051B.10.000458
S19T19IaCAaTC151B.10.000009
S19T19IaCaaTa5050B.1.617.20.000188
S19T19IaCaaTa4949B.1.20.000431
S19T19IaCaaTa4848B.1.4290.001129
S19T19IaCaaTa4444B.1.6280.015504
S19T19IaCaaTa3939B.1.5260.000917
S19T19IaCaaTa3737B.1.2430.002575
S19T19IaCaaTa3232B.1.1770.000421
S19T19IaCaaTa3031AY.250.00018
S19T19IaCAaTT131AY.250.000006
S19T19IaCaaTa3131B.1.177.350.021424
S19T19IaCaaTa3030AY.980.00237
S19T19IaCaaTa3030B.1.36.310.052539
S19T19IaCaaTa3030P.1.140.001434
S19T19IaCaaTa2727B.1.1.2140.001497
S19T19IaCaaTa2626B.1.10.000472
S19T19IaCaaTa2424AY.260.000679
S19T19IaCaaTa2323B.1.1.2970.051454
S19T19IaCaaTa2222AY.46.60.001589
S19T19IaCaaTa2222B.1.5250.00249
S19T19IaCaaTa1919B.1.1.370.003664
S19T19IaCaaTa1818AY.990.018888
S19T19IaCaaTa1818B.1.1.5190.000715
S19T19IaCaaTa1717AY.1060.005693
S19T19IaCaaTa1515AY.1190.00053
S19T19IaCaaTa1515AY.50.00031
S19T19IaCaaTa1414AY.9.20.000514
S19T19IaCaaTa1212AY.1110.002198
S19T19IaCaaTa1212AY.4.20.00026
S19T19IaCaaTa1212Q.10.001516
S19T19IaCaaTa1111AY.90.000744
S19T19IaCaaTa1010AY.30.000099
S19T19IaCaaTa1010AY.410.002939
S19T19IaCaaTa1010AY.420.000402
S19T19IaCaaTa1010B.1.177.810.001893
S19T19IaCaaTa1010B.1.4270.000505
S19T19IaCaaTa1010B.1.6370.000731
S19T19IaCaaTa88A.2.50.003992
S19T19IaCaaTa88AY.390.000198
S19T19IaCaaTa88AY.98.10.000387
S19T19IaCaaTa88P.1.10.002541
S19T19IaCaaTa77B.1.1.3010.008255
S19T19IaCaaTa66AY.1020.000159
S19T19IaCaaTa66AY.330.000401
S19T19IaCaaTa66AY.99.20.000553
S19T19IaCaaTa55AY.75.10.000902
S19T19IaCaaTa55B.1.1600.000156
S19T19IaCaaTa55D.20.000375
S19T19IaCaaTa55Q.40.002274
S19T19IaCaaTa44AY.450.000487
S19T19IaCaaTa44AY.460.000416
S19T19IaCaaTa44AY.470.000124
S19T19IaCaaTa44AY.70.000784
S19T19IaCaaTa44B.1.177.440.002076
S19T19IaCaaTa44B.1.177.540.002426
S19T19IaCaaTa44B.1.2210.000284
S19T19IaCaaTa44B.1.2320.002149
S19T19IaCaaTa44B.1.3130.026316
S19T19IaCaaTa44C.360.003643
S19T19IaCaaTa33AY.1000.000138
S19T19IaCaaTa33AY.1170.000254
S19T19IaCaaTa33AY.5.30.001012
S19T19IaCaaTa33AY.60.000123
S19T19IaCaaTa33B.1.1.1700.003741
S19T19IaCaaTa33B.1.1.2220.000612
S19T19IaCaaTa33B.1.177.570.000843
S19T19IaCaaTa33B.1.2400.000647
S19T19IaCaaTa33B.1.2580.0002
S19T19IaCaaTa33B.1.6210.000266
S19T19IaCaaTa33C.370.000348
S19T19IaCaaTa33P.1.150.000697
S19T19IaCaaTa33P.1.20.003468
S19T19IaCaaTa33Q.80.000495
S19T19IaCaaTa22A0.000774
S19T19IaCaaTa22A.2.5.20.003145
S19T19IaCaaTa22AY.1090.001479
S19T19IaCaaTa22AY.1180.000125
S19T19IaCaaTa22AY.1210.000271
S19T19IaCaaTa22AY.270.000129
S19T19IaCaaTa22AY.540.000191
S19T19IaCaaTa22AY.580.001815
S19T19IaCaaTa22AY.610.00021
S19T19IaCaaTa22AY.7.10.000225
S19T19IaCaaTa22AY.720.002721
S19T19IaCaaTa22AY.750.000112
S19T19IaCaaTa22AY.850.000854
S19T19IaCaaTa22AY.870.001665
S19T19IaCaaTa22AY.940.000885
S19T19IaCaaTa22B.1.1.3690.000892
S19T19IaCaaTa22B.1.1.5180.012658
S19T19IaCaaTa22B.1.177.170.001642
S19T19IaCaaTa22B.1.2410.001623
S19T19IaCaaTa22B.1.258.170.000208
S19T19IaCaaTa22B.1.3110.000549
S19T19IaCaaTa22B.1.3200.002491
S19T19IaCaaTa22B.1.360.000292
S19T19IaCaaTa22B.1.36.290.001035
S19T19IaCaaTa22B.1.4660.046512
S19T19IaCaaTa22B.1.6200.001892
S19T19IaCaaTa22B.1.80.003945
S19T19IaCaaTa22B.1.840.041667
S19T19IaCaaTa22P.1.70.000639
S19T19IaCaaTa22Q.20.001227
S19T19IaCaaTa11A.30.002096
S19T19IaCaaTa11AU.30.00211
S19T19IaCaaTa11AY.10.000396
S19T19IaCaaTa11AY.1130.000142
S19T19IaCaaTa11AY.1140.000231
S19T19IaCaaTa11AY.1160.000287
S19T19IaCaaTa11AY.1200.000037
S19T19IaCaaTa11AY.120.10.000321
S19T19IaCaaTa11AY.240.000431
S19T19IaCaaTa11AY.280.00189
S19T19IaCaaTa11AY.290.000016
S19T19IaCaaTa11AY.340.000097
S19T19IaCaaTa11AY.360.000148
S19T19IaCaaTa11AY.380.000499
S19T19IaCaaTa11AY.39.10.00004
S19T19IaCaaTa11AY.520.000814
S19T19IaCaaTa11AY.590.00053
S19T19IaCaaTa11AY.640.000595
S19T19IaCaaTa11AY.680.000274
S19T19IaCaaTa11AY.690.000187
S19T19IaCaaTa11AY.700.000209
S19T19IaCaaTa11AY.740.000116
S19T19IaCaaTa11AY.760.004831
S19T19IaCaaTa11AY.9.10.000084
S19T19IaCaaTa11AY.910.00073
S19T19IaCaaTa11AY.99.10.001553
S19T19IaCaaTa11AZ.20.000821
S19T19IaCaaTa11B0.000128
S19T19IaCaaTa11B.1.1.250.000569
S19T19IaCaaTa11B.1.1.2770.000759
S19T19IaCaaTa11B.1.1.280.000311
S19T19IaCaaTa11B.1.1.3110.000358
S19T19IaCaaTa11B.1.1.3290.003846
S19T19IaCaaTa11B.1.1.330.000421
S19T19IaCaaTa11B.1.1.4160.000905
S19T19IaCaaTa11B.1.1.4640.001473
S19T19IaCaaTa11B.1.1.630.000386
S19T19IaCaaTa11B.1.1280.000635
S19T19IaCaaTa11B.1.177.100.000878
S19T19IaCaaTa11B.1.177.150.000631
S19T19IaCaaTa11B.1.177.330.001645
S19T19IaCaaTa11B.1.177.40.000211
S19T19IaCaaTa11B.1.177.60.000977
S19T19IaCaaTa11B.1.177.600.000218
S19T19IaCaaTa11B.1.177.730.000566
S19T19IaCaaTa11B.1.177.870.000728
S19T19IaCaaTa11B.1.2060.000816
S19T19IaCaaTa11B.1.243.20.014493
S19T19IaCaaTa11B.1.258.160.001637
S19T19IaCaaTa11B.1.258.30.001675
S19T19IaCaaTa11B.1.3360.002439
S19T19IaCaaTa11B.1.3490.000715
S19T19IaCaaTa11B.1.351.30.000876
S19T19IaCaaTa11B.1.351.50.0006
S19T19IaCaaTa11B.1.36.160.001425
S19T19IaCaaTa11B.1.36.240.006173
S19T19IaCaaTa11B.1.36.380.001642
S19T19IaCaaTa11B.1.3930.028571
S19T19IaCaaTa11B.1.4390.005917
S19T19IaCaaTa11B.1.5650.00081
S19T19IaCaaTa11B.1.5750.000303
S19T19IaCaaTa11B.1.5820.000491
S19T19IaCaaTa11B.1.5890.007576
S19T19IaCaaTa11B.1.5950.000261
S19T19IaCaaTa11B.1.90.006173
S19T19IaCaaTa11B.400.000364
S19T19IaCaaTa11C.140.004329
S19T19IaCaaTa11C.160.00106
S19T19IaCaaTa11C.37.10.002618
S19T19IaCaaTa11P.1.100.000269
S19T19IaCaaTa11P.1.120.000484
S19T19IaCaaTa11P.20.000187
S19T19IaCaaTa11P.30.001595
S19T19IaCaaTa11W.30.005263
S19T19IaCaaTa11XA0.022222

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.