CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T1238T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1238T1238TsynacCacT1573779740.50670425274-25276
S1238T1238TsynacCacA1573777150.49024625274-25276
S1238T1238TsynacCacG15737480.0030501425274-25276

Details of the mutation T1238T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1238T1238TacCacT797415737All0.001525
S1238T1238TacCacA771515737All0.001476
S1238T1238TacCacG4815737All0.000009
S1238T1238TacCacA32723272B.1.1.3180.987326
S1238T1238TacCacT26782763B.1.1.70.002397
S1238T1238TacCacA842763B.1.1.70.000075
S1238T1238TacCacG12763B.1.1.70.000001
S1238T1238TacCacT13431400AY.40.00209
S1238T1238TacCacA571400AY.40.000089
S1238T1238TacCacA12101210AZ.20.993432
S1238T1238TacCacA11521152AZ.10.999133
S1238T1238TacCacA656656AZ.30.99696
S1238T1238TacCacT396396R.10.035644
S1238T1238TacCacT331332B.1.617.10.042688
S1238T1238TacCacA1332B.1.617.10.000129
S1238T1238TacCacT288295AY.1190.010169
S1238T1238TacCacA7295AY.1190.000247
S1238T1238TacCacA294294AZ.40.986577
S1238T1238TacCacA285285AZ.51
S1238T1238TacCacT199222AY.1030.001236
S1238T1238TacCacA23222AY.1030.000143
S1238T1238TacCacT201201B.1.1.2140.011147
S1238T1238TacCacT154185B.1.617.20.00058
S1238T1238TacCacA29185B.1.617.20.000109
S1238T1238TacCacG2185B.1.617.20.000008
S1238T1238TacCacT154171B.1.20.001356
S1238T1238TacCacA17171B.1.20.00015
S1238T1238TacCacT88161AY.30.000875
S1238T1238TacCacA72161AY.30.000716
S1238T1238TacCacG1161AY.30.00001
S1238T1238TacCacA123123AZ.2.11
S1238T1238TacCacA118118AZ.60.991597
S1238T1238TacCacT7295AY.250.000433
S1238T1238TacCacA1795AY.250.000102
S1238T1238TacCacG695AY.250.000036
S1238T1238TacCacT9295P.10.001449
S1238T1238TacCacA395P.10.000047
S1238T1238TacCacT7694B.10.000696
S1238T1238TacCacA1694B.10.000147
S1238T1238TacCacG294B.10.000018
S1238T1238TacCacT9093B.1.4290.002118
S1238T1238TacCacA393B.1.4290.000071
S1238T1238TacCacT8888AY.180.888889
S1238T1238TacCacT7285B.1.10.001306
S1238T1238TacCacA1385B.1.10.000236
S1238T1238TacCacT6375AY.430.000279
S1238T1238TacCacA875AY.430.000035
S1238T1238TacCacG475AY.430.000018
S1238T1238TacCacT6671AY.440.000402
S1238T1238TacCacA571AY.440.00003
S1238T1238TacCacT6161B.1.6270.123232
S1238T1238TacCacT5859AY.740.006708
S1238T1238TacCacA159AY.740.000116
S1238T1238TacCacT3759B.1.1770.000487
S1238T1238TacCacA2259B.1.1770.00029
S1238T1238TacCacT5959B.1.177.860.010824
S1238T1238TacCacA4853AY.470.001493
S1238T1238TacCacT553AY.470.000156
S1238T1238TacCacT4747B.1.160.210.959184
S1238T1238TacCacT4646B.1.3110.01263
S1238T1238TacCacT4141AY.98.10.001986
S1238T1238TacCacA2639B.1.4270.001313
S1238T1238TacCacT1339B.1.4270.000656
S1238T1238TacCacT3636B.1.6090.017258
S1238T1238TacCacT3335AY.750.001849
S1238T1238TacCacA235AY.750.000112
S1238T1238TacCacT3535B.1.1.5190.00139
S1238T1238TacCacT3435B.1.5260.000799
S1238T1238TacCacG135B.1.5260.000024
S1238T1238TacCacT3535C.36.30.019853
S1238T1238TacCacT3333B.1.619.10.021167
S1238T1238TacCacA3333K.10.785714
S1238T1238TacCacG2332AY.140.002024
S1238T1238TacCacT932AY.140.000792
S1238T1238TacCacT2727B.1.1600.000842
S1238T1238TacCacT2626B.1.177.320.035088
S1238T1238TacCacT2424B.1.1390.017595
S1238T1238TacCacT2424Q.30.003481
S1238T1238TacCacT2223AY.420.000885
S1238T1238TacCacA123AY.420.00004
S1238T1238TacCacT1923B.1.360.002772
S1238T1238TacCacA423B.1.360.000584
S1238T1238TacCacA2122AY.270.001359
S1238T1238TacCacT122AY.270.000065
S1238T1238TacCacT2121AY.120.10.006742
S1238T1238TacCacT2121B.1.177.810.003976
S1238T1238TacCacT1919AY.200.000738
S1238T1238TacCacT1619B.1.3510.000476
S1238T1238TacCacA319B.1.3510.000089
S1238T1238TacCacT1118AY.4.20.000239
S1238T1238TacCacA718AY.4.20.000152
S1238T1238TacCacT1717AY.1170.001437
S1238T1238TacCacT1617AY.390.000395
S1238T1238TacCacA117AY.390.000025
S1238T1238TacCacA1717AY.39.10.000673
S1238T1238TacCacT1617AY.50.00033
S1238T1238TacCacA117AY.50.000021
S1238T1238TacCacT1717AY.60.000699
S1238T1238TacCacT1616AY.700.003336
S1238T1238TacCacT1616AY.850.006835
S1238T1238TacCacT1616B.1.5960.001394
S1238T1238TacCacT1616C.370.001857
S1238T1238TacCacT1515B.1.1.4340.005228
S1238T1238TacCacT1115B.1.2430.000765
S1238T1238TacCacA315B.1.2430.000209
S1238T1238TacCacG115B.1.2430.00007
S1238T1238TacCacT1515B.1.5170.006405
S1238T1238TacCacT1515P.1.150.003485
S1238T1238TacCacT1214AY.1020.000318
S1238T1238TacCacG114AY.1020.000027
S1238T1238TacCacA114AY.1020.000027
S1238T1238TacCacT1414P.1.140.000669
S1238T1238TacCacT1213AY.1000.000552
S1238T1238TacCacA113AY.1000.000046
S1238T1238TacCacT1313AY.160.004935
S1238T1238TacCacT1313AY.4.2.10.001937
S1238T1238TacCacT1112AY.1180.000689
S1238T1238TacCacA112AY.1180.000063
S1238T1238TacCacT1012AY.290.000158
S1238T1238TacCacG212AY.290.000032
S1238T1238TacCacT1212AY.90.000811
S1238T1238TacCacT1112B.1.466.20.004304
S1238T1238TacCacA112B.1.466.20.000391
S1238T1238TacCacT1112B.1.4700.015449
S1238T1238TacCacA112B.1.4700.001404
S1238T1238TacCacT911AY.99.20.000829
S1238T1238TacCacA211AY.99.20.000184
S1238T1238TacCacA710B.1.1.2220.001428
S1238T1238TacCacT310B.1.1.2220.000612
S1238T1238TacCacT1010B.1.1.5120.285714
S1238T1238TacCacT910B.1.5990.032847
S1238T1238TacCacA110B.1.5990.00365
S1238T1238TacCacT910B.1.6210.000797
S1238T1238TacCacA110B.1.6210.000089
S1238T1238TacCacT79AY.980.000553
S1238T1238TacCacA29AY.980.000158
S1238T1238TacCacT99B.1.5750.002731
S1238T1238TacCacT88AY.5.40.002214
S1238T1238TacCacT88B.1.438.10.000858
S1238T1238TacCacT78B.1.6230.003755
S1238T1238TacCacA18B.1.6230.000536
S1238T1238TacCacT88Q.10.001011
S1238T1238TacCacT77B.1.36.290.003621
S1238T1238TacCacT77B.1.5770.004811
S1238T1238TacCacT66AY.330.000401
S1238T1238TacCacT66AY.340.000582
S1238T1238TacCacT66AY.5.30.002024
S1238T1238TacCacT66B.1.1.280.001867
S1238T1238TacCacT66B.1.2400.001293
S1238T1238TacCacT66B.1.2580.000399
S1238T1238TacCacT66B.1.4030.019608
S1238T1238TacCacT56B.1.6370.000365
S1238T1238TacCacA16B.1.6370.000073
S1238T1238TacCacT55AY.1200.000186
S1238T1238TacCacT35AY.3.10.000256
S1238T1238TacCacA25AY.3.10.000171
S1238T1238TacCacA55AY.450.000608
S1238T1238TacCacT35AY.9.20.00011
S1238T1238TacCacA25AY.9.20.000073
S1238T1238TacCacT55B.1.1.390.002548
S1238T1238TacCacT55B.1.1.500.003394
S1238T1238TacCacT55B.1.177.180.0058
S1238T1238TacCacT35B.1.5250.000339
S1238T1238TacCacA25B.1.5250.000226
S1238T1238TacCacA55B.1.5760.004533
S1238T1238TacCacT44AY.510.003636
S1238T1238TacCacT44AY.880.003537
S1238T1238TacCacT34B0.000383
S1238T1238TacCacA14B0.000128
S1238T1238TacCacT44B.1.1.3030.01105
S1238T1238TacCacT44B.1.177.430.005908
S1238T1238TacCacT44B.1.177.600.000874
S1238T1238TacCacT44B.1.5950.001044
S1238T1238TacCacT44B.1.780.034188
S1238T1238TacCacT44D.20.0003
S1238T1238TacCacT44P.1.100.001078
S1238T1238TacCacT23AD.20.000438
S1238T1238TacCacA13AD.20.000219
S1238T1238TacCacA33AT.10.015385
S1238T1238TacCacA23AY.230.000139
S1238T1238TacCacT13AY.230.00007
S1238T1238TacCacT33AY.260.000085
S1238T1238TacCacT33AY.4.10.002212
S1238T1238TacCacT23AY.610.00021
S1238T1238TacCacG13AY.610.000105
S1238T1238TacCacT33AY.860.00249
S1238T1238TacCacT33AY.9.10.000251
S1238T1238TacCacT33AY.970.005102
S1238T1238TacCacT33B.1.1.10.00098
S1238T1238TacCacT33B.1.1.2200.005576
S1238T1238TacCacT33B.1.1.2800.009259
S1238T1238TacCacT33B.1.1.330.001263
S1238T1238TacCacT33B.1.1.700.001023
S1238T1238TacCacT33B.1.4160.003807
S1238T1238TacCacA23B.1.5510.002581
S1238T1238TacCacT13B.1.5510.00129
S1238T1238TacCacT33B.300.044118
S1238T1238TacCacT33C.10.007177
S1238T1238TacCacT33Q.80.000495
S1238T1238TacCacG120.055556
S1238T1238TacCacT120.055556
S1238T1238TacCacT22AJ.10.090909
S1238T1238TacCacT22AY.1110.000366
S1238T1238TacCacT22AY.120.000632
S1238T1238TacCacT12AY.300.000396
S1238T1238TacCacA12AY.300.000396
S1238T1238TacCacT22AY.320.001065
S1238T1238TacCacA12AY.460.000104
S1238T1238TacCacT12AY.460.000104
S1238T1238TacCacT22AY.46.60.000144
S1238T1238TacCacT12AY.550.000917
S1238T1238TacCacG12AY.550.000917
S1238T1238TacCacT22AY.560.00321
S1238T1238TacCacT22AY.580.001815
S1238T1238TacCacT22AY.640.00119
S1238T1238TacCacA22AY.75.10.000361
S1238T1238TacCacT22AY.770.002255
S1238T1238TacCacT22AY.920.000575
S1238T1238TacCacT22B.1.1.1740.006757
S1238T1238TacCacT22B.1.1.3260.003521
S1238T1238TacCacT22B.1.1.370.000386
S1238T1238TacCacT12B.1.1.3890.006061
S1238T1238TacCacA12B.1.1.3890.006061
S1238T1238TacCacT22B.1.1.630.000772
S1238T1238TacCacT22B.1.1110.00235
S1238T1238TacCacT22B.1.1610.034483
S1238T1238TacCacT22B.1.177.170.001642
S1238T1238TacCacT22B.1.177.70.00033
S1238T1238TacCacT22B.1.2140.007326
S1238T1238TacCacT12B.1.2210.000071
S1238T1238TacCacA12B.1.2210.000071
S1238T1238TacCacT22B.1.2340.000264
S1238T1238TacCacT22B.1.36.180.00084
S1238T1238TacCacT22B.1.3670.001585
S1238T1238TacCacT12B.1.5650.00081
S1238T1238TacCacG12B.1.5650.00081
S1238T1238TacCacT22B.1.5890.015152
S1238T1238TacCacT22B.60.00182
S1238T1238TacCacA12C.360.000911
S1238T1238TacCacT12C.360.000911
S1238T1238TacCacT22N.30.011628
S1238T1238TacCacT22P.1.120.000968
S1238T1238TacCacT22P.1.20.002312
S1238T1238TacCacA12P.20.000187
S1238T1238TacCacT12P.20.000187
S1238T1238TacCacT11A.23.10.000704
S1238T1238TacCacT11A.50.001923
S1238T1238TacCacT11AE.80.000489
S1238T1238TacCacT11AU.20.002421
S1238T1238TacCacT11AY.1060.000335
S1238T1238TacCacT11AY.110.001339
S1238T1238TacCacT11AY.1130.000142
S1238T1238TacCacT11AY.1150.005208
S1238T1238TacCacT11AY.1160.000287
S1238T1238TacCacT11AY.1210.000135
S1238T1238TacCacT11AY.130.000161
S1238T1238TacCacT11AY.20.000356
S1238T1238TacCacT11AY.210.001898
S1238T1238TacCacT11AY.280.00189
S1238T1238TacCacT11AY.29.10.000221
S1238T1238TacCacT11AY.360.000148
S1238T1238TacCacT11AY.4.50.000107
S1238T1238TacCacT11AY.46.10.001027
S1238T1238TacCacT11AY.46.20.000635
S1238T1238TacCacT11AY.480.000465
S1238T1238TacCacT11AY.490.003195
S1238T1238TacCacT11AY.530.000288
S1238T1238TacCacT11AY.540.000095
S1238T1238TacCacT11AY.650.000533
S1238T1238TacCacT11AY.670.000464
S1238T1238TacCacT11AY.70.000196
S1238T1238TacCacT11AY.710.000475
S1238T1238TacCacA11AY.760.004831
S1238T1238TacCacT11AY.790.001211
S1238T1238TacCacT11AY.910.00073
S1238T1238TacCacT11AY.930.000273
S1238T1238TacCacA11B.1.1.1210.002427
S1238T1238TacCacT11B.1.1.1530.001095
S1238T1238TacCacT11B.1.1.1630.007634
S1238T1238TacCacT11B.1.1.2160.00089
S1238T1238TacCacT11B.1.1.2310.003096
S1238T1238TacCacT11B.1.1.2400.004695
S1238T1238TacCacT11B.1.1.2410.00207
S1238T1238TacCacT11B.1.1.2430.004082
S1238T1238TacCacT11B.1.1.2840.000107
S1238T1238TacCacT11B.1.1.3010.001179
S1238T1238TacCacT11B.1.1.3120.001912
S1238T1238TacCacT11B.1.1.3680.003086
S1238T1238TacCacT11B.1.1.3700.012658
S1238T1238TacCacT11B.1.1.3970.002252
S1238T1238TacCacT11B.1.1.4860.001577
S1238T1238TacCacT11B.1.1.520.012195
S1238T1238TacCacT11B.1.1.980.018519
S1238T1238TacCacT11B.1.1100.004525
S1238T1238TacCacT11B.1.1200.007692
S1238T1238TacCacT11B.1.1280.000635
S1238T1238TacCacT11B.1.1580.02381
S1238T1238TacCacT11B.1.160.200.008929
S1238T1238TacCacT11B.1.177.240.001295
S1238T1238TacCacT11B.1.177.40.000211
S1238T1238TacCacT11B.1.177.520.001757
S1238T1238TacCacT11B.1.177.540.000606
S1238T1238TacCacA11B.1.177.580.001332
S1238T1238TacCacT11B.1.177.610.043478
S1238T1238TacCacT11B.1.2320.000537
S1238T1238TacCacT11B.1.2360.002053
S1238T1238TacCacT11B.1.2370.004975
S1238T1238TacCacT11B.1.2390.001221
S1238T1238TacCacT11B.1.2410.000812
S1238T1238TacCacT11B.1.2510.021739
S1238T1238TacCacT11B.1.258.110.000396
S1238T1238TacCacT11B.1.258.170.000104
S1238T1238TacCacT11B.1.2650.001271
S1238T1238TacCacT11B.1.2810.021739
S1238T1238TacCacA11B.1.3200.001245
S1238T1238TacCacT11B.1.3320.003497
S1238T1238TacCacT11B.1.3410.022727
S1238T1238TacCacT11B.1.3490.000715
S1238T1238TacCacA11B.1.351.20.000303
S1238T1238TacCacT11B.1.3690.000285
S1238T1238TacCacT11B.1.4990.00105
S1238T1238TacCacT11B.1.5030.002488
S1238T1238TacCacA11B.1.5210.004975
S1238T1238TacCacT11B.1.5400.009709
S1238T1238TacCacT11B.310.003731
S1238T1238TacCacT11B.610.005747
S1238T1238TacCacA11P.1.160.000374
S1238T1238TacCacT11P.1.70.000319
S1238T1238TacCacT11Q.70.001111
S1238T1238TacCacT11W.40.001351