CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T1238A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1238T1238AnonsynAccGcc45400.88888925274-25276
S1238T1238AnonsynAcCGcA4520.044444425274-25276
S1238T1238AnonsynAcCGcT4520.044444425274-25276
S1238T1238AnonsynAcCGcG4510.022222225274-25276

Details of the mutation T1238A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1238T1238AAccGcc4045All0.000008
S1238T1238AAcCGcT245All0
S1238T1238AAcCGcA245All0
S1238T1238AAcCGcG145All0
S1238T1238AAccGcc1313B.1.617.20.000049
S1238T1238AAccGcc45B.10.000037
S1238T1238AAcCGcT15B.10.000009
S1238T1238AAccGcc55B.1.1770.000066
S1238T1238AAcCGcG130.055556
S1238T1238AAccGcc130.055556
S1238T1238AAcCGcT130.055556
S1238T1238AAccGcc33AY.1000.000138
S1238T1238AAccGcc23B.1.1.70.000002
S1238T1238AAcCGcA13B.1.1.70.000001
S1238T1238AAccGcc22AY.30.00002
S1238T1238AAccGcc22AY.330.000134
S1238T1238AAccGcc11AY.250.000006
S1238T1238AAccGcc11AY.430.000004
S1238T1238AAccGcc11AY.820.001357
S1238T1238AAccGcc11B.1.1.280.000311
S1238T1238AAccGcc11B.1.1.3440.010753
S1238T1238AAccGcc11B.1.20.000009
S1238T1238AAcCGcA11B.1.3510.00003
S1238T1238AAccGcc11B.1.3750.00082
S1238T1238AAccGcc11B.1.6110.04