CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = T1117I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1117T1117InonsynaCaaTa671467130.99985124911-24913
S1117T1117InonsynaCAaTT671410.00014894324911-24913

Details of the mutation T1117I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1117T1117IaCaaTa67136714All0.001284
S1117T1117IaCAaTT16714All0
S1117T1117IaCaaTa12891289AY.30.012821
S1117T1117IaCaaTa897897AY.40.001396
S1117T1117IaCaaTa684684B.1.1.70.000612
S1117T1117IaCaaTa366366B.1.617.20.001378
S1117T1117IaCaaTa330330AY.440.002009
S1117T1117IaCaaTa208208B.10.001905
S1117T1117IaCaaTa189189AY.460.019671
S1117T1117IaCaaTa160160B.1.1.10.05227
S1117T1117IaCaaTa157157AY.430.000696
S1117T1117IaCaaTa156156B.1.1.3890.945455
S1117T1117IaCaaTa124124AY.1030.00077
S1117T1117IaCaaTa113113AY.90.007638
S1117T1117IaCaaTa9595AY.260.002689
S1117T1117IaCaaTa8686B.1.1770.001132
S1117T1117IaCaaTa8686B.1.20.000757
S1117T1117IaCaaTa8585B.1.10.001542
S1117T1117IaCaaTa6666AY.250.000397
S1117T1117IaCaaTa6565AY.98.10.003148
S1117T1117IaCaaTa5959AY.390.001458
S1117T1117IaCaaTa5858AY.230.004045
S1117T1117IaCaaTa5555P.10.000866
S1117T1117IaCaaTa5454AY.4.20.001171
S1117T1117IaCaaTa5050AY.480.023256
S1117T1117IaCaaTa3939AY.1170.003296
S1117T1117IaCaaTa3838AY.1200.001413
S1117T1117IaCaaTa3737AY.3.10.003155
S1117T1117IaCaaTa3434B.1.258.170.003535
S1117T1117IaCaaTa3333B.1.5960.002876
S1117T1117IaCaaTa3131AY.540.002956
S1117T1117IaCaaTa3131AY.750.001737
S1117T1117IaCaaTa3030AY.50.000619
S1117T1117IaCaaTa2929D.20.002176
S1117T1117IaCaaTa2828AY.700.005838
S1117T1117IaCaaTa2727AY.1000.001242
S1117T1117IaCaaTa2626B.1.1.4340.009062
S1117T1117IaCaaTa2626B.1.360.003793
S1117T1117IaCaaTa2525B.1.3510.000743
S1117T1117IaCaaTa2525B.1.4290.000588
S1117T1117IaCaaTa2424B.1.1.4160.021719
S1117T1117IaCaaTa2424B.1.5260.000564
S1117T1117IaCaaTa2323B.1.258.110.009116
S1117T1117IaCaaTa2222AY.39.10.000871
S1117T1117IaCaaTa2222P.1.140.001052
S1117T1117IaCaaTa2020AY.300.007915
S1117T1117IaCaaTa1818B.1.160.160.016729
S1117T1117IaCaaTa1818B.1.2430.001253
S1117T1117IaCaaTa1717AY.330.001135
S1117T1117IaCaaTa1616AY.420.000644
S1117T1117IaCaaTa1515C.350.01161
S1117T1117IaCaaTa1414AY.200.000544
S1117T1117IaCaaTa1414AY.610.001467
S1117T1117IaCaaTa1414Q.30.00203
S1117T1117IaCaaTa1313B.1.1600.000405
S1117T1117IaCaaTa1313C.370.001509
S1117T1117IaCaaTa1212B.1.1.3060.005261
S1117T1117IaCaaTa1111AY.1210.001488
S1117T1117IaCaaTa1111AY.360.00163
S1117T1117IaCaaTa1111AY.75.10.001983
S1117T1117IaCaaTa1111AY.9.10.000921
S1117T1117IaCaaTa1111AY.950.008371
S1117T1117IaCaaTa1010AY.270.000647
S1117T1117IaCaaTa1010AY.290.000158
S1117T1117IaCaaTa1010B.1.1.5190.000397
S1117T1117IaCaaTa99AY.590.004767
S1117T1117IaCaaTa99AY.99.20.000829
S1117T1117IaCaaTa99B.1.1.3750.107143
S1117T1117IaCaaTa99B.1.5250.001018
S1117T1117IaCaaTa99B.1.6210.000797
S1117T1117IaCaaTa88AY.1190.000282
S1117T1117IaCaaTa88AY.340.000776
S1117T1117IaCaaTa77AY.1160.002007
S1117T1117IaCaaTa77AY.20.002493
S1117T1117IaCaaTa77P.1.70.002235
S1117T1117IaCaaTa66AY.1100.000676
S1117T1117IaCaaTa66AY.1180.000376
S1117T1117IaCaaTa66AY.130.000966
S1117T1117IaCaaTa66AY.46.60.000433
S1117T1117IaCaaTa66AY.470.000187
S1117T1117IaCaaTa66AY.770.006764
S1117T1117IaCaaTa66AY.840.002625
S1117T1117IaCaaTa66AY.9.20.00022
S1117T1117IaCaaTa66B.1.1.2140.000333
S1117T1117IaCaaTa66B.1.1.3110.002149
S1117T1117IaCaaTa66B.1.1.630.002315
S1117T1117IaCaaTa55AY.100.00265
S1117T1117IaCaaTa55AY.1020.000133
S1117T1117IaCaaTa55AY.1130.000712
S1117T1117IaCaaTa55AY.16.10.00235
S1117T1117IaCaaTa55AY.34.10.00255
S1117T1117IaCaaTa55AY.4.50.000537
S1117T1117IaCaaTa55AY.980.000395
S1117T1117IaCaaTa55B.1.1.1270.3125
S1117T1117IaCaaTa55B.1.1.700.001705
S1117T1117IaCaaTa55B.1.2210.000355
S1117T1117IaCaaTa44AY.400.003857
S1117T1117IaCaaTa44AY.640.002381
S1117T1117IaCaaTa44AY.850.001709
S1117T1117IaCaaTa44B0.000511
S1117T1117IaCaaTa44B.1.1110.0047
S1117T1117IaCaaTa44B.1.2290.038835
S1117T1117IaCaaTa44B.1.3620.006163
S1117T1117IaCaaTa33AY.160.001139
S1117T1117IaCaaTa33AY.240.001293
S1117T1117IaCaaTa33AY.380.001498
S1117T1117IaCaaTa33AY.46.20.001906
S1117T1117IaCaaTa33AY.5.30.001012
S1117T1117IaCaaTa33AY.560.004815
S1117T1117IaCaaTa33AY.710.001425
S1117T1117IaCaaTa33AY.720.004082
S1117T1117IaCaaTa33B.1.1.5250.016393
S1117T1117IaCaaTa33B.1.177.210.000229
S1117T1117IaCaaTa33B.1.177.440.001557
S1117T1117IaCaaTa33B.1.2270.142857
S1117T1117IaCaaTa33B.1.2340.000396
S1117T1117IaCaaTa33B.1.5030.007463
S1117T1117IaCaaTa33B.1.6280.001057
S1117T1117IaCaaTa120.055556
S1117T1117IaCAaTT120.055556
S1117T1117IaCaaTa22A.2.50.000998
S1117T1117IaCaaTa22AA.60.032258
S1117T1117IaCaaTa22AY.1090.001479
S1117T1117IaCaaTa22AY.1110.000366
S1117T1117IaCaaTa22AY.1140.000462
S1117T1117IaCaaTa22AY.320.001065
S1117T1117IaCaaTa22AY.4.40.000818
S1117T1117IaCaaTa22AY.450.000243
S1117T1117IaCaaTa22AY.5.40.000553
S1117T1117IaCaaTa22AY.520.001629
S1117T1117IaCaaTa22AY.60.000082
S1117T1117IaCaaTa22AY.670.000929
S1117T1117IaCaaTa22AY.80.001212
S1117T1117IaCaaTa22AY.880.001768
S1117T1117IaCaaTa22AY.920.000575
S1117T1117IaCaaTa22B.1.1.1410.004024
S1117T1117IaCaaTa22B.1.1.1980.002937
S1117T1117IaCaaTa22B.1.1.2160.001781
S1117T1117IaCaaTa22B.1.1.330.000842
S1117T1117IaCaaTa22B.1.1.370.000386
S1117T1117IaCaaTa22B.1.1.3720.001377
S1117T1117IaCaaTa22B.1.1.3910.017094
S1117T1117IaCaaTa22B.1.1.3980.006452
S1117T1117IaCaaTa22B.1.1.4320.002532
S1117T1117IaCaaTa22B.1.177.90.002663
S1117T1117IaCaaTa22B.1.2580.000133
S1117T1117IaCaaTa22B.1.3110.000549
S1117T1117IaCaaTa22B.1.36.180.00084
S1117T1117IaCaaTa22B.1.36.290.001035
S1117T1117IaCaaTa22B.1.4090.001563
S1117T1117IaCaaTa22B.1.4700.002809
S1117T1117IaCaaTa22B.1.5300.014286
S1117T1117IaCaaTa22B.1.617.10.000258
S1117T1117IaCaaTa22B.1.621.10.001012
S1117T1117IaCaaTa22B.1.6370.000146
S1117T1117IaCaaTa22B.1.6380.105263
S1117T1117IaCaaTa22B.1.910.004149
S1117T1117IaCaaTa22B.400.000729
S1117T1117IaCaaTa22C.36.30.001134
S1117T1117IaCaaTa22L.30.007092
S1117T1117IaCaaTa22P.1.150.000465
S1117T1117IaCaaTa22P.1.170.000324
S1117T1117IaCaaTa11AY.10.000396
S1117T1117IaCaaTa11AY.1010.00049
S1117T1117IaCaaTa11AY.1050.000643
S1117T1117IaCaaTa11AY.1060.000335
S1117T1117IaCaaTa11AY.120.000316
S1117T1117IaCaaTa11AY.120.10.000321
S1117T1117IaCaaTa11AY.120.2.10.000498
S1117T1117IaCaaTa11AY.23.10.000417
S1117T1117IaCaaTa11AY.280.00189
S1117T1117IaCaaTa11AY.4.2.10.000149
S1117T1117IaCaaTa11AY.46.40.000165
S1117T1117IaCaaTa11AY.580.000907
S1117T1117IaCaaTa11AY.620.000436
S1117T1117IaCaaTa11AY.630.000387
S1117T1117IaCaaTa11AY.680.000274
S1117T1117IaCaaTa11AY.70.000196
S1117T1117IaCaaTa11AY.7.10.000113
S1117T1117IaCaaTa11AY.730.000665
S1117T1117IaCaaTa11AY.820.001357
S1117T1117IaCaaTa11AY.870.000833
S1117T1117IaCaaTa11AY.900.000684
S1117T1117IaCaaTa11AY.910.00073
S1117T1117IaCaaTa11AY.930.000273
S1117T1117IaCaaTa11AY.960.002075
S1117T1117IaCaaTa11AY.990.001049
S1117T1117IaCaaTa11B.1.1.100.001115
S1117T1117IaCaaTa11B.1.1.250.000569
S1117T1117IaCaaTa11B.1.1.2770.000759
S1117T1117IaCaaTa11B.1.1.280.000311
S1117T1117IaCaaTa11B.1.1.3170.000412
S1117T1117IaCaaTa11B.1.1.3180.000302
S1117T1117IaCaaTa11B.1.1.3850.004464
S1117T1117IaCaaTa11B.1.1.4090.002833
S1117T1117IaCaaTa11B.1.1.4220.045455
S1117T1117IaCaaTa11B.1.1.500.000679
S1117T1117IaCaaTa11B.1.1.510.001718
S1117T1117IaCaaTa11B.1.1.830.00271
S1117T1117IaCaaTa11B.1.110.30.000718
S1117T1117IaCaaTa11B.1.1260.001276
S1117T1117IaCaaTa11B.1.1390.000733
S1117T1117IaCaaTa11B.1.177.150.000631
S1117T1117IaCaaTa11B.1.177.160.000664
S1117T1117IaCaaTa11B.1.177.40.000211
S1117T1117IaCaaTa11B.1.177.410.0025
S1117T1117IaCaaTa11B.1.177.520.001757
S1117T1117IaCaaTa11B.1.177.530.002392
S1117T1117IaCaaTa11B.1.177.570.000281
S1117T1117IaCaaTa11B.1.177.600.000218
S1117T1117IaCaaTa11B.1.177.750.001041
S1117T1117IaCaaTa11B.1.177.830.001481
S1117T1117IaCaaTa11B.1.2060.000816
S1117T1117IaCaaTa11B.1.2360.002053
S1117T1117IaCaaTa11B.1.2370.004975
S1117T1117IaCaaTa11B.1.258.120.007874
S1117T1117IaCaaTa11B.1.2670.018519
S1117T1117IaCaaTa11B.1.2790.000514
S1117T1117IaCaaTa11B.1.2980.002114
S1117T1117IaCaaTa11B.1.3150.006061
S1117T1117IaCaaTa11B.1.3340.018182
S1117T1117IaCaaTa11B.1.3610.001289
S1117T1117IaCaaTa11B.1.3690.000285
S1117T1117IaCaaTa11B.1.4000.000429
S1117T1117IaCaaTa11B.1.4160.001269
S1117T1117IaCaaTa11B.1.4270.00005
S1117T1117IaCaaTa11B.1.438.10.000107
S1117T1117IaCaaTa11B.1.466.20.000391
S1117T1117IaCaaTa11B.1.4740.001901
S1117T1117IaCaaTa11B.1.4800.002488
S1117T1117IaCaaTa11B.1.5230.002451
S1117T1117IaCaaTa11B.1.5640.000426
S1117T1117IaCaaTa11B.1.5650.00081
S1117T1117IaCaaTa11B.1.5680.001111
S1117T1117IaCaaTa11B.1.5880.00091
S1117T1117IaCaaTa11B.1.5950.000261
S1117T1117IaCaaTa11B.1.930.000934
S1117T1117IaCaaTa11C.230.005814
S1117T1117IaCaaTa11D.30.005917
S1117T1117IaCaaTa11N.40.004255
S1117T1117IaCaaTa11N.90.005952
S1117T1117IaCaaTa11P.1.10.000318
S1117T1117IaCaaTa11P.20.000187
S1117T1117IaCaaTa11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.