CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = S982A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S982S982AnonsynTcaGca113942811394180.99999124506-24508
S982S982AnonsynTcAGcG113942880.0000070210724506-24508
S982S982AnonsynTcAGcT113942810.00000087763324506-24508
S982S982AnonsynTcAGcC113942810.00000087763324506-24508

Details of the mutation S982A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S982S982ATcaGca11394181139428All0.217927
S982S982ATcAGcG81139428All0.000002
S982S982ATcAGcT11139428All0
S982S982ATcAGcC11139428All0
S982S982ATcaGca11134231113433B.1.1.70.996762
S982S982ATcAGcG81113433B.1.1.70.000007
S982S982ATcAGcT11113433B.1.1.70.000001
S982S982ATcAGcC11113433B.1.1.70.000001
S982S982ATcaGca77047704Q.10.973219
S982S982ATcaGca68536853Q.30.993909
S982S982ATcaGca29262926B.1.10.05308
S982S982ATcaGca21132113Q.40.960891
S982S982ATcaGca16261626Q.20.997546
S982S982ATcaGca13771377B.10.012613
S982S982ATcaGca900900Q.71
S982S982ATcaGca510510B.1.177.730.288788
S982S982ATcaGca336336Q.80.055409
S982S982ATcaGca237237B.1.3750.194262
S982S982ATcaGca151151Q.61
S982S982ATcaGca9393B.1.177.70.015331
S982S982ATcaGca7373B.1.2210.005185
S982S982ATcaGca7272P.10.001134
S982S982ATcaGca6060B.1.617.20.000226
S982S982ATcaGca5959Q.51
S982S982ATcaGca5656B.1.5260.001316
S982S982ATcaGca5252B.1.1770.000685
S982S982ATcaGca4646AY.300.018203
S982S982ATcaGca4545XA1
S982S982ATcaGca4343B.1.20.000379
S982S982ATcaGca3333B.1.1.4090.093484
S982S982ATcaGca3232AY.1030.000199
S982S982ATcaGca3030AY.440.000183
S982S982ATcaGca2626AY.260.000736
S982S982ATcaGca2626B.1.5960.002266
S982S982ATcaGca2525AY.430.000111
S982S982ATcaGca2525P.1.160.009353
S982S982ATcaGca2424AY.290.000379
S982S982ATcaGca1919AY.1180.00119
S982S982ATcaGca1919P.1.10.006036
S982S982ATcaGca1717AY.40.000026
S982S982ATcaGca1616B.1.3510.000476
S982S982ATcaGca1515B.1.1.5070.130435
S982S982ATcaGca1414B0.001789
S982S982ATcaGca1414B.1.5760.012693
S982S982ATcaGca1313B.1.617.10.001677
S982S982ATcaGca1313P.1.170.002103
S982S982ATcaGca11110.611111
S982S982ATcaGca1010B.1.1.1610.035336
S982S982ATcaGca1010B.1.621.10.005058
S982S982ATcaGca99AY.230.000628
S982S982ATcaGca99AY.420.000362
S982S982ATcaGca99AY.680.002464
S982S982ATcaGca99B.1.4110.033333
S982S982ATcaGca99C.36.30.005105
S982S982ATcaGca88AY.75.10.001442
S982S982ATcaGca88B.1.5950.002088
S982S982ATcaGca77B.1.1.5190.000278
S982S982ATcaGca66AY.390.000148
S982S982ATcaGca66B.1.6230.003219
S982S982ATcaGca55B.1.1570.014925
S982S982ATcaGca55B.1.1600.000156
S982S982ATcaGca55B.1.4290.000118
S982S982ATcaGca55B.1.6280.001762
S982S982ATcaGca55P.1.140.000239
S982S982ATcaGca44AY.9.20.000147
S982S982ATcaGca44B.1.1.2200.007435
S982S982ATcaGca44B.1.2060.003263
S982S982ATcaGca44B.1.5640.001704
S982S982ATcaGca44B.1.6370.000292
S982S982ATcaGca44P.1.150.000929
S982S982ATcaGca33A0.001161
S982S982ATcaGca33AY.330.0002
S982S982ATcaGca33AY.520.002443
S982S982ATcaGca33AY.750.000168
S982S982ATcaGca33B.1.1.3180.000905
S982S982ATcaGca33B.1.1390.002199
S982S982ATcaGca33B.1.177.860.00055
S982S982ATcaGca33B.1.258.170.000312
S982S982ATcaGca33B.1.3110.000824
S982S982ATcaGca33B.1.3690.000856
S982S982ATcaGca33B.1.5250.000339
S982S982ATcaGca33B.1.5800.012195
S982S982ATcaGca33B.1.5990.010949
S982S982ATcaGca33B.1.6270.006061
S982S982ATcaGca33C.370.000348
S982S982ATcaGca22AY.4.2.10.000298
S982S982ATcaGca22AY.530.000575
S982S982ATcaGca22AY.850.000854
S982S982ATcaGca22B.1.1.3700.025316
S982S982ATcaGca22B.1.1.5230.003125
S982S982ATcaGca22B.1.177.120.000303
S982S982ATcaGca22B.1.2370.00995
S982S982ATcaGca22B.1.4270.000101
S982S982ATcaGca22B.1.6090.000959
S982S982ATcaGca22B.1.6210.000177
S982S982ATcaGca22B.1.6330.083333
S982S982ATcaGca22P.1.130.001797
S982S982ATcaGca11A.2.50.000499
S982S982ATcaGca11A.270.001656
S982S982ATcaGca11AY.1020.000027
S982S982ATcaGca11AY.120.20.001285
S982S982ATcaGca11AY.1210.000135
S982S982ATcaGca11AY.16.10.00047
S982S982ATcaGca11AY.30.00001
S982S982ATcaGca11AY.360.000148
S982S982ATcaGca11AY.460.000104
S982S982ATcaGca11AY.46.20.000635
S982S982ATcaGca11AY.50.000021
S982S982ATcaGca11AY.540.000095
S982S982ATcaGca11AY.610.000105
S982S982ATcaGca11AY.650.000533
S982S982ATcaGca11AY.700.000209
S982S982ATcaGca11AY.740.000116
S982S982ATcaGca11AY.9.10.000084
S982S982ATcaGca11AY.920.000287
S982S982ATcaGca11AY.950.000761
S982S982ATcaGca11AY.98.10.000048
S982S982ATcaGca11B.1.1.100.001115
S982S982ATcaGca11B.1.1.1710.003676
S982S982ATcaGca11B.1.1.2160.00089
S982S982ATcaGca11B.1.1.2360.006897
S982S982ATcaGca11B.1.1.2770.000759
S982S982ATcaGca11B.1.1.280.000311
S982S982ATcaGca11B.1.1.2840.000107
S982S982ATcaGca11B.1.1.3170.000412
S982S982ATcaGca11B.1.1.3430.020833
S982S982ATcaGca11B.1.1.3740.002375
S982S982ATcaGca11B.1.1.390.00051
S982S982ATcaGca11B.1.1.4170.002703
S982S982ATcaGca11B.1.1.5240.020833
S982S982ATcaGca11B.1.1.5260.003546
S982S982ATcaGca11B.1.1.700.000341
S982S982ATcaGca11B.1.160.70.002079
S982S982ATcaGca11B.1.1700.00431
S982S982ATcaGca11B.1.177.150.000631
S982S982ATcaGca11B.1.177.190.001431
S982S982ATcaGca11B.1.177.210.000076
S982S982ATcaGca11B.1.177.40.000211
S982S982ATcaGca11B.1.177.540.000606
S982S982ATcaGca11B.1.177.650.000665
S982S982ATcaGca11B.1.2140.003663
S982S982ATcaGca11B.1.2340.000132
S982S982ATcaGca11B.1.2580.000067
S982S982ATcaGca11B.1.3010.005917
S982S982ATcaGca11B.1.3490.000715
S982S982ATcaGca11B.1.3540.043478
S982S982ATcaGca11B.1.360.000146
S982S982ATcaGca11B.1.3800.006623
S982S982ATcaGca11B.1.3960.000706
S982S982ATcaGca11B.1.3970.004854
S982S982ATcaGca11B.1.3990.001934
S982S982ATcaGca11B.1.4320.011236
S982S982ATcaGca11B.1.4330.003195
S982S982ATcaGca11B.1.5240.001406
S982S982ATcaGca11B.1.5300.007143
S982S982ATcaGca11B.1.5330.009615
S982S982ATcaGca11B.1.5610.000397
S982S982ATcaGca11B.1.5740.002151
S982S982ATcaGca11B.1.5750.000303
S982S982ATcaGca11B.1.5770.000687
S982S982ATcaGca11B.1.6060.006024
S982S982ATcaGca11B.1.617.30.002985
S982S982ATcaGca11B.1.6190.000871
S982S982ATcaGca11B.1.6200.000946
S982S982ATcaGca11B.1.6340.003425
S982S982ATcaGca11B.1.6360.006711
S982S982ATcaGca11B.1.9.50.005682
S982S982ATcaGca11B.1.940.027027
S982S982ATcaGca11P.1.10.10.00813
S982S982ATcaGca11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.