CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = S939F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S939S939FnonsyntCttTt14079140780.99992924377-24379
S939S939FnonsyntCTtTC1407910.000071027824377-24379

Details of the mutation S939F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S939S939FtCttTt1407814079All0.002693
S939S939FtCTtTC114079All0
S939S939FtCttTt24022402B.1.1.70.00215
S939S939FtCttTt15571557B.1.619.10.998717
S939S939FtCttTt13021302AY.40.002026
S939S939FtCttTt11091109B.1.6190.966028
S939S939FtCttTt708708B.10.006485
S939S939FtCttTt599599AY.440.003646
S939S939FtCttTt553553B.1.5610.219532
S939S939FtCttTt444444B.1.20.00391
S939S939FtCttTt309309AY.430.001369
S939S939FtCttTt300300B.1.617.20.00113
S939S939FtCttTt290290B.1.621.10.146687
S939S939FtCttTt253253B.1.1770.003331
S939S939FtCttTt247247AY.30.002457
S939S939FtCttTt174174AY.1030.00108
S939S939FtCttTt169169AY.250.001017
S939S939FtCttTt160160B.1.177.460.146924
S939S939FtCttTt157158B.1.10.002848
S939S939FtCTtTC1158B.1.10.000018
S939S939FtCttTt145145B.1.6280.051092
S939S939FtCttTt128128B.1.5260.003009
S939S939FtCttTt125125B.1.3701
S939S939FtCttTt122122P.1.140.005832
S939S939FtCttTt119119AY.750.006667
S939S939FtCttTt9090B.1.258.170.009357
S939S939FtCttTt8383B.1.4290.001953
S939S939FtCttTt7676B.1.1.390.038736
S939S939FtCttTt7474B.1.6210.00655
S939S939FtCttTt6969AY.1020.001829
S939S939FtCttTt6363AY.9.20.002314
S939S939FtCttTt5959P.10.000929
S939S939FtCttTt5858B.1.1.500.039375
S939S939FtCttTt5757B.1.1.5190.002264
S939S939FtCttTt5454R.10.00486
S939S939FtCttTt5353B.1.36.310.09282
S939S939FtCttTt5151B.1.177.600.01114
S939S939FtCttTt4747B.1.2430.00327
S939S939FtCttTt4545AY.390.001112
S939S939FtCttTt4545B.1.3510.001338
S939S939FtCttTt4242B.1.177.750.043704
S939S939FtCttTt4141B.1.1.10.013394
S939S939FtCttTt3838AY.360.005632
S939S939FtCttTt3838B.1.2240.95
S939S939FtCttTt3636B.1.1600.001123
S939S939FtCttTt3333B.1.1.3180.009958
S939S939FtCttTt3232B.1.36.90.102894
S939S939FtCttTt3131AY.1190.001095
S939S939FtCttTt2828B.1.360.004085
S939S939FtCttTt2626B.1.5250.002942
S939S939FtCttTt2525B.1.1.4340.008714
S939S939FtCttTt2424AY.260.000679
S939S939FtCttTt2424B.1.5960.002091
S939S939FtCttTt2323AY.39.10.000911
S939S939FtCttTt2323B.1.177.120.003489
S939S939FtCttTt2222B.1.2580.001464
S939S939FtCttTt2121AY.420.000845
S939S939FtCttTt2121AY.460.002186
S939S939FtCttTt2020AY.46.50.003968
S939S939FtCttTt2020AY.980.00158
S939S939FtCttTt2020B.1.1.330.008418
S939S939FtCttTt1919AY.1000.000874
S939S939FtCttTt1919AY.200.000738
S939S939FtCttTt1919AY.290.0003
S939S939FtCttTt1919B.1.177.820.009069
S939S939FtCttTt1818B.1.160.80.023196
S939S939FtCttTt1717B.1.1.2940.021519
S939S939FtCttTt1717B.1.177.100.014925
S939S939FtCttTt1717B.1.177.810.003218
S939S939FtCttTt1717B.1.4800.042289
S939S939FtCttTt1717B.1.6330.708333
S939S939FtCttTt1616A.270.02649
S939S939FtCttTt1616B.1.1.1890.024206
S939S939FtCttTt1616B.1.4170.457143
S939S939FtCttTt1616Q.30.002321
S939S939FtCttTt1515AY.99.20.001382
S939S939FtCttTt1515B.1.36.160.021368
S939S939FtCttTt1414B.1.1.2200.026022
S939S939FtCttTt1414B.1.2210.000994
S939S939FtCttTt1414B.1.5690.202899
S939S939FtCttTt1414P.20.002613
S939S939FtCttTt1313AY.1170.001099
S939S939FtCttTt1313AY.4.50.001397
S939S939FtCttTt1313AY.410.003821
S939S939FtCttTt1313AY.50.000268
S939S939FtCttTt1313AY.850.005553
S939S939FtCttTt1313B0.001662
S939S939FtCttTt1212B.1.1.250.006822
S939S939FtCttTt1212B.1.3960.008469
S939S939FtCttTt1111A0.004257
S939S939FtCttTt1111AY.4.20.000239
S939S939FtCttTt1111B.1.36.120.105769
S939S939FtCttTt1111B.1.4080.04059
S939S939FtCttTt1010AY.1060.003349
S939S939FtCttTt1010AY.46.40.001645
S939S939FtCttTt1010AY.590.005297
S939S939FtCttTt1010B.1.177.440.005189
S939S939FtCttTt1010B.1.4270.000505
S939S939FtCttTt1010B.1.5170.00427
S939S939FtCttTt99A.10.002537
S939S939FtCttTt99AY.450.001095
S939S939FtCttTt99AY.60.00037
S939S939FtCttTt99B.1.177.860.001651
S939S939FtCttTt99B.1.2400.00194
S939S939FtCttTt99B.1.617.10.001161
S939S939FtCttTt88AY.330.000534
S939S939FtCttTt88B.1.1.3060.003507
S939S939FtCttTt88B.1.2390.009768
S939S939FtCttTt88B.1.4220.006499
S939S939FtCttTt88B.1.595.30.210526
S939S939FtCttTt88D.20.0006
S939S939FtCttTt88P.1.120.003872
S939S939FtCttTt77AY.140.000616
S939S939FtCttTt77AY.5.40.001937
S939S939FtCttTt77AY.90.000473
S939S939FtCttTt77B.1.177.650.004657
S939S939FtCttTt77B.1.177.690.010386
S939S939FtCttTt77B.1.6230.003755
S939S939FtCttTt77B.1.6250.016471
S939S939FtCttTt66AY.1130.000854
S939S939FtCttTt66AY.1200.000223
S939S939FtCttTt66AY.470.000187
S939S939FtCttTt66AY.610.000629
S939S939FtCttTt66AY.680.001642
S939S939FtCttTt66AY.75.10.001082
S939S939FtCttTt66B.1.36.290.003104
S939S939FtCttTt66B.1.3690.001711
S939S939FtCttTt66B.1.438.10.000644
S939S939FtCttTt66C.370.000696
S939S939FtCttTt55AY.1070.00233
S939S939FtCttTt55AY.1180.000313
S939S939FtCttTt55AY.230.000349
S939S939FtCttTt55AY.540.000477
S939S939FtCttTt55AY.580.004537
S939S939FtCttTt55B.1.1.2220.00102
S939S939FtCttTt55B.1.2270.238095
S939S939FtCttTt55B.1.466.20.001956
S939S939FtCttTt55B.1.4680.028571
S939S939FtCttTt55B.1.5270.018519
S939S939FtCttTt55B.1.5750.001517
S939S939FtCttTt55B.1.6090.002397
S939S939FtCttTt55B.1.6370.000365
S939S939FtCttTt44AY.130.000644
S939S939FtCttTt44AY.520.003257
S939S939FtCttTt44AY.730.002661
S939S939FtCttTt44AY.880.003537
S939S939FtCttTt44B.1.1.2160.003562
S939S939FtCttTt44B.1.1.2430.016327
S939S939FtCttTt44B.1.1.280.001245
S939S939FtCttTt44B.1.1.3110.001433
S939S939FtCttTt44B.1.1.3690.001785
S939S939FtCttTt44B.1.1.5210.02139
S939S939FtCttTt44B.1.110.30.002874
S939S939FtCttTt44B.1.177.320.005398
S939S939FtCttTt44B.1.177.540.002426
S939S939FtCttTt44B.1.36.10.004561
S939S939FtCttTt44B.1.36.180.001681
S939S939FtCttTt44B.1.4700.005618
S939S939FtCttTt44B.1.4710.010929
S939S939FtCttTt44B.1.4990.004202
S939S939FtCttTt44Q.40.001819
S939S939FtCttTt33AY.120.20.003856
S939S939FtCttTt33AY.20.001068
S939S939FtCttTt33AY.4.2.10.000447
S939S939FtCttTt33AY.640.001786
S939S939FtCttTt33AY.930.000819
S939S939FtCttTt33AY.98.10.000145
S939S939FtCttTt33B.1.1.100.003344
S939S939FtCttTt33B.1.1.1530.003286
S939S939FtCttTt33B.1.1.2140.000166
S939S939FtCttTt33B.1.1.3050.011583
S939S939FtCttTt33B.1.1.3160.002775
S939S939FtCttTt33B.1.1.370.000579
S939S939FtCttTt33B.1.1.750.031915
S939S939FtCttTt33B.1.1700.012931
S939S939FtCttTt33B.1.351.20.000908
S939S939FtCttTt33B.1.4200.03125
S939S939FtCttTt33B.1.5760.00272
S939S939FtCttTt33B.1.6270.006061
S939S939FtCttTt33B.30.002492
S939S939FtCttTt33N.50.0053
S939S939FtCttTt33P.1.10.000953
S939S939FtCttTt33P.1.150.000697
S939S939FtCttTt33P.1.70.000958
S939S939FtCttTt22A.2.5.10.009615
S939S939FtCttTt22A.2.5.20.003145
S939S939FtCttTt22AD.20.000438
S939S939FtCttTt22AY.1080.002205
S939S939FtCttTt22AY.1100.000225
S939S939FtCttTt22AY.1110.000366
S939S939FtCttTt22AY.16.10.00094
S939S939FtCttTt22AY.280.003781
S939S939FtCttTt22AY.29.10.000441
S939S939FtCttTt22AY.3.10.000171
S939S939FtCttTt22AY.300.000791
S939S939FtCttTt22AY.370.000632
S939S939FtCttTt22AY.480.00093
S939S939FtCttTt22AY.5.30.000675
S939S939FtCttTt22AY.650.001066
S939S939FtCttTt22AY.690.000373
S939S939FtCttTt22AY.890.009804
S939S939FtCttTt22AY.920.000575
S939S939FtCttTt22B.1.1.1800.021505
S939S939FtCttTt22B.1.1.2170.007273
S939S939FtCttTt22B.1.1.2660.02439
S939S939FtCttTt22B.1.1.2790.002242
S939S939FtCttTt22B.1.1.2910.001485
S939S939FtCttTt22B.1.1.3170.000823
S939S939FtCttTt22B.1.1.3260.003521
S939S939FtCttTt22B.1.1.3330.002153
S939S939FtCttTt22B.1.1.3720.001377
S939S939FtCttTt22B.1.1.4040.031746
S939S939FtCttTt22B.1.1.4200.002012
S939S939FtCttTt22B.1.1.4480.004065
S939S939FtCttTt22B.1.1.5280.009615
S939S939FtCttTt22B.1.1.630.000772
S939S939FtCttTt22B.1.1110.00235
S939S939FtCttTt22B.1.177.150.001262
S939S939FtCttTt22B.1.177.70.00033
S939S939FtCttTt22B.1.2100.004264
S939S939FtCttTt22B.1.2230.005556
S939S939FtCttTt22B.1.2340.000264
S939S939FtCttTt22B.1.2410.001623
S939S939FtCttTt22B.1.2670.037037
S939S939FtCttTt22B.1.3050.004301
S939S939FtCttTt22B.1.3110.000549
S939S939FtCttTt22B.1.36.360.001204
S939S939FtCttTt22B.1.36.80.002
S939S939FtCttTt22B.1.4040.002604
S939S939FtCttTt22B.1.4970.00063
S939S939FtCttTt22B.1.5710.019417
S939S939FtCttTt22B.1.575.10.004878
S939S939FtCttTt22B.1.5770.001375
S939S939FtCttTt22B.400.000729
S939S939FtCttTt22C.230.011628
S939S939FtCttTt22C.36.3.10.005435
S939S939FtCttTt22P.1.100.000539
S939S939FtCttTt22P.1.170.000324
S939S939FtCttTt22Q.20.001227
S939S939FtCttTt11A.20.000662
S939S939FtCttTt11A.210.00277
S939S939FtCttTt11A.23.10.000704
S939S939FtCttTt11AT.10.005128
S939S939FtCttTt11AY.1010.00049
S939S939FtCttTt11AY.1140.000231
S939S939FtCttTt11AY.1160.000287
S939S939FtCttTt11AY.116.10.000311
S939S939FtCttTt11AY.120.10.000321
S939S939FtCttTt11AY.120.2.10.000498
S939S939FtCttTt11AY.190.00114
S939S939FtCttTt11AY.23.10.000417
S939S939FtCttTt11AY.320.000532
S939S939FtCttTt11AY.340.000097
S939S939FtCttTt11AY.4.40.000409
S939S939FtCttTt11AY.46.20.000635
S939S939FtCttTt11AY.46.60.000072
S939S939FtCttTt11AY.530.000288
S939S939FtCttTt11AY.550.000917
S939S939FtCttTt11AY.560.001605
S939S939FtCttTt11AY.570.000656
S939S939FtCttTt11AY.620.000436
S939S939FtCttTt11AY.670.000464
S939S939FtCttTt11AY.7.20.000559
S939S939FtCttTt11AY.700.000209
S939S939FtCttTt11AY.720.001361
S939S939FtCttTt11AY.740.000116
S939S939FtCttTt11AY.770.001127
S939S939FtCttTt11AY.80.000606
S939S939FtCttTt11AY.810.001992
S939S939FtCttTt11AY.820.001357
S939S939FtCttTt11AY.9.10.000084
S939S939FtCttTt11AY.940.000443
S939S939FtCttTt11AY.970.001701
S939S939FtCttTt11AZ.20.000821
S939S939FtCttTt11B.1.1.1340.011364
S939S939FtCttTt11B.1.1.1610.003534
S939S939FtCttTt11B.1.1.1630.007634
S939S939FtCttTt11B.1.1.1760.000439
S939S939FtCttTt11B.1.1.2040.00304
S939S939FtCttTt11B.1.1.2630.001558
S939S939FtCttTt11B.1.1.2770.000759
S939S939FtCttTt11B.1.1.2840.000107
S939S939FtCttTt11B.1.1.2980.000862
S939S939FtCttTt11B.1.1.3310.011628
S939S939FtCttTt11B.1.1.3440.010753
S939S939FtCttTt11B.1.1.3700.012658
S939S939FtCttTt11B.1.1.40.002976
S939S939FtCttTt11B.1.1.4160.000905
S939S939FtCttTt11B.1.1.4190.007407
S939S939FtCttTt11B.1.1.4320.001266
S939S939FtCttTt11B.1.1.4620.008621
S939S939FtCttTt11B.1.1.5070.008696
S939S939FtCttTt11B.1.1.530.013699
S939S939FtCttTt11B.1.1.700.000341
S939S939FtCttTt11B.1.1040.00369
S939S939FtCttTt11B.1.1190.010526
S939S939FtCttTt11B.1.1280.000635
S939S939FtCttTt11B.1.1390.000733
S939S939FtCttTt11B.1.1460.004237
S939S939FtCttTt11B.1.160.150.00495
S939S939FtCttTt11B.1.160.160.000929
S939S939FtCttTt11B.1.177.140.006098
S939S939FtCttTt11B.1.177.40.000211
S939S939FtCttTt11B.1.177.480.003125
S939S939FtCttTt11B.1.177.50.001242
S939S939FtCttTt11B.1.177.530.002392
S939S939FtCttTt11B.1.177.60.000977
S939S939FtCttTt11B.1.177.720.00339
S939S939FtCttTt11B.1.177.770.000726
S939S939FtCttTt11B.1.177.870.000728
S939S939FtCttTt11B.1.2010.005682
S939S939FtCttTt11B.1.2060.000816
S939S939FtCttTt11B.1.214.20.0006
S939S939FtCttTt11B.1.2370.004975
S939S939FtCttTt11B.1.2470.014925
S939S939FtCttTt11B.1.2980.002114
S939S939FtCttTt11B.1.30.002618
S939S939FtCttTt11B.1.3240.001605
S939S939FtCttTt11B.1.350.008475
S939S939FtCttTt11B.1.3560.001727
S939S939FtCttTt11B.1.36.220.001208
S939S939FtCttTt11B.1.36.70.004
S939S939FtCttTt11B.1.3610.001289
S939S939FtCttTt11B.1.3620.001541
S939S939FtCttTt11B.1.3890.001002
S939S939FtCttTt11B.1.3930.028571
S939S939FtCttTt11B.1.4000.000429
S939S939FtCttTt11B.1.4410.009615
S939S939FtCttTt11B.1.4430.004673
S939S939FtCttTt11B.1.4620.007246
S939S939FtCttTt11B.1.4630.008065
S939S939FtCttTt11B.1.5160.001957
S939S939FtCttTt11B.1.5400.009709
S939S939FtCttTt11B.1.5510.00129
S939S939FtCttTt11B.1.5640.000426
S939S939FtCttTt11B.1.5820.000491
S939S939FtCttTt11B.1.5950.000261
S939S939FtCttTt11B.1.596.10.009346
S939S939FtCttTt11B.1.5970.00463
S939S939FtCttTt11B.1.6040.017241
S939S939FtCttTt11B.1.6050.005952
S939S939FtCttTt11B.1.6100.003546
S939S939FtCttTt11B.1.6260.005714
S939S939FtCttTt11B.1.80.001972
S939S939FtCttTt11B.3.10.001658
S939S939FtCttTt11B.40.002208
S939S939FtCttTt11B.460.020833
S939S939FtCttTt11B.530.011765
S939S939FtCttTt11B.560.028571
S939S939FtCttTt11B.60.00091
S939S939FtCttTt11C.10.002392
S939S939FtCttTt11C.160.00106
S939S939FtCttTt11C.350.000774
S939S939FtCttTt11C.360.000911
S939S939FtCttTt11C.36.30.000567
S939S939FtCttTt11N.90.005952
S939S939FtCttTt11Q.60.006623
S939S939FtCttTt11U.20.008772
S939S939FtCttTt11W.40.001351