CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 939 | S939F | nonsyn | tCt | tTt | 14079 | 14078 | 0.999929 | 24377-24379 | |
S | 939 | S939F | nonsyn | tCT | tTC | 14079 | 1 | 0.0000710278 | 24377-24379 |
Details of the mutation S939F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 939 | S939F | tCt | tTt | 14078 | 14079 | All | 0.002693 |
S | 939 | S939F | tCT | tTC | 1 | 14079 | All | 0 |
S | 939 | S939F | tCt | tTt | 2402 | 2402 | B.1.1.7 | 0.00215 |
S | 939 | S939F | tCt | tTt | 1557 | 1557 | B.1.619.1 | 0.998717 |
S | 939 | S939F | tCt | tTt | 1302 | 1302 | AY.4 | 0.002026 |
S | 939 | S939F | tCt | tTt | 1109 | 1109 | B.1.619 | 0.966028 |
S | 939 | S939F | tCt | tTt | 708 | 708 | B.1 | 0.006485 |
S | 939 | S939F | tCt | tTt | 599 | 599 | AY.44 | 0.003646 |
S | 939 | S939F | tCt | tTt | 553 | 553 | B.1.561 | 0.219532 |
S | 939 | S939F | tCt | tTt | 444 | 444 | B.1.2 | 0.00391 |
S | 939 | S939F | tCt | tTt | 309 | 309 | AY.43 | 0.001369 |
S | 939 | S939F | tCt | tTt | 300 | 300 | B.1.617.2 | 0.00113 |
S | 939 | S939F | tCt | tTt | 290 | 290 | B.1.621.1 | 0.146687 |
S | 939 | S939F | tCt | tTt | 253 | 253 | B.1.177 | 0.003331 |
S | 939 | S939F | tCt | tTt | 247 | 247 | AY.3 | 0.002457 |
S | 939 | S939F | tCt | tTt | 174 | 174 | AY.103 | 0.00108 |
S | 939 | S939F | tCt | tTt | 169 | 169 | AY.25 | 0.001017 |
S | 939 | S939F | tCt | tTt | 160 | 160 | B.1.177.46 | 0.146924 |
S | 939 | S939F | tCt | tTt | 157 | 158 | B.1.1 | 0.002848 |
S | 939 | S939F | tCT | tTC | 1 | 158 | B.1.1 | 0.000018 |
S | 939 | S939F | tCt | tTt | 145 | 145 | B.1.628 | 0.051092 |
S | 939 | S939F | tCt | tTt | 128 | 128 | B.1.526 | 0.003009 |
S | 939 | S939F | tCt | tTt | 125 | 125 | B.1.370 | 1 |
S | 939 | S939F | tCt | tTt | 122 | 122 | P.1.14 | 0.005832 |
S | 939 | S939F | tCt | tTt | 119 | 119 | AY.75 | 0.006667 |
S | 939 | S939F | tCt | tTt | 90 | 90 | B.1.258.17 | 0.009357 |
S | 939 | S939F | tCt | tTt | 83 | 83 | B.1.429 | 0.001953 |
S | 939 | S939F | tCt | tTt | 76 | 76 | B.1.1.39 | 0.038736 |
S | 939 | S939F | tCt | tTt | 74 | 74 | B.1.621 | 0.00655 |
S | 939 | S939F | tCt | tTt | 69 | 69 | AY.102 | 0.001829 |
S | 939 | S939F | tCt | tTt | 63 | 63 | AY.9.2 | 0.002314 |
S | 939 | S939F | tCt | tTt | 59 | 59 | P.1 | 0.000929 |
S | 939 | S939F | tCt | tTt | 58 | 58 | B.1.1.50 | 0.039375 |
S | 939 | S939F | tCt | tTt | 57 | 57 | B.1.1.519 | 0.002264 |
S | 939 | S939F | tCt | tTt | 54 | 54 | R.1 | 0.00486 |
S | 939 | S939F | tCt | tTt | 53 | 53 | B.1.36.31 | 0.09282 |
S | 939 | S939F | tCt | tTt | 51 | 51 | B.1.177.60 | 0.01114 |
S | 939 | S939F | tCt | tTt | 47 | 47 | B.1.243 | 0.00327 |
S | 939 | S939F | tCt | tTt | 45 | 45 | AY.39 | 0.001112 |
S | 939 | S939F | tCt | tTt | 45 | 45 | B.1.351 | 0.001338 |
S | 939 | S939F | tCt | tTt | 42 | 42 | B.1.177.75 | 0.043704 |
S | 939 | S939F | tCt | tTt | 41 | 41 | B.1.1.1 | 0.013394 |
S | 939 | S939F | tCt | tTt | 38 | 38 | AY.36 | 0.005632 |
S | 939 | S939F | tCt | tTt | 38 | 38 | B.1.224 | 0.95 |
S | 939 | S939F | tCt | tTt | 36 | 36 | B.1.160 | 0.001123 |
S | 939 | S939F | tCt | tTt | 33 | 33 | B.1.1.318 | 0.009958 |
S | 939 | S939F | tCt | tTt | 32 | 32 | B.1.36.9 | 0.102894 |
S | 939 | S939F | tCt | tTt | 31 | 31 | AY.119 | 0.001095 |
S | 939 | S939F | tCt | tTt | 28 | 28 | B.1.36 | 0.004085 |
S | 939 | S939F | tCt | tTt | 26 | 26 | B.1.525 | 0.002942 |
S | 939 | S939F | tCt | tTt | 25 | 25 | B.1.1.434 | 0.008714 |
S | 939 | S939F | tCt | tTt | 24 | 24 | AY.26 | 0.000679 |
S | 939 | S939F | tCt | tTt | 24 | 24 | B.1.596 | 0.002091 |
S | 939 | S939F | tCt | tTt | 23 | 23 | AY.39.1 | 0.000911 |
S | 939 | S939F | tCt | tTt | 23 | 23 | B.1.177.12 | 0.003489 |
S | 939 | S939F | tCt | tTt | 22 | 22 | B.1.258 | 0.001464 |
S | 939 | S939F | tCt | tTt | 21 | 21 | AY.42 | 0.000845 |
S | 939 | S939F | tCt | tTt | 21 | 21 | AY.46 | 0.002186 |
S | 939 | S939F | tCt | tTt | 20 | 20 | AY.46.5 | 0.003968 |
S | 939 | S939F | tCt | tTt | 20 | 20 | AY.98 | 0.00158 |
S | 939 | S939F | tCt | tTt | 20 | 20 | B.1.1.33 | 0.008418 |
S | 939 | S939F | tCt | tTt | 19 | 19 | AY.100 | 0.000874 |
S | 939 | S939F | tCt | tTt | 19 | 19 | AY.20 | 0.000738 |
S | 939 | S939F | tCt | tTt | 19 | 19 | AY.29 | 0.0003 |
S | 939 | S939F | tCt | tTt | 19 | 19 | B.1.177.82 | 0.009069 |
S | 939 | S939F | tCt | tTt | 18 | 18 | B.1.160.8 | 0.023196 |
S | 939 | S939F | tCt | tTt | 17 | 17 | B.1.1.294 | 0.021519 |
S | 939 | S939F | tCt | tTt | 17 | 17 | B.1.177.10 | 0.014925 |
S | 939 | S939F | tCt | tTt | 17 | 17 | B.1.177.81 | 0.003218 |
S | 939 | S939F | tCt | tTt | 17 | 17 | B.1.480 | 0.042289 |
S | 939 | S939F | tCt | tTt | 17 | 17 | B.1.633 | 0.708333 |
S | 939 | S939F | tCt | tTt | 16 | 16 | A.27 | 0.02649 |
S | 939 | S939F | tCt | tTt | 16 | 16 | B.1.1.189 | 0.024206 |
S | 939 | S939F | tCt | tTt | 16 | 16 | B.1.417 | 0.457143 |
S | 939 | S939F | tCt | tTt | 16 | 16 | Q.3 | 0.002321 |
S | 939 | S939F | tCt | tTt | 15 | 15 | AY.99.2 | 0.001382 |
S | 939 | S939F | tCt | tTt | 15 | 15 | B.1.36.16 | 0.021368 |
S | 939 | S939F | tCt | tTt | 14 | 14 | B.1.1.220 | 0.026022 |
S | 939 | S939F | tCt | tTt | 14 | 14 | B.1.221 | 0.000994 |
S | 939 | S939F | tCt | tTt | 14 | 14 | B.1.569 | 0.202899 |
S | 939 | S939F | tCt | tTt | 14 | 14 | P.2 | 0.002613 |
S | 939 | S939F | tCt | tTt | 13 | 13 | AY.117 | 0.001099 |
S | 939 | S939F | tCt | tTt | 13 | 13 | AY.4.5 | 0.001397 |
S | 939 | S939F | tCt | tTt | 13 | 13 | AY.41 | 0.003821 |
S | 939 | S939F | tCt | tTt | 13 | 13 | AY.5 | 0.000268 |
S | 939 | S939F | tCt | tTt | 13 | 13 | AY.85 | 0.005553 |
S | 939 | S939F | tCt | tTt | 13 | 13 | B | 0.001662 |
S | 939 | S939F | tCt | tTt | 12 | 12 | B.1.1.25 | 0.006822 |
S | 939 | S939F | tCt | tTt | 12 | 12 | B.1.396 | 0.008469 |
S | 939 | S939F | tCt | tTt | 11 | 11 | A | 0.004257 |
S | 939 | S939F | tCt | tTt | 11 | 11 | AY.4.2 | 0.000239 |
S | 939 | S939F | tCt | tTt | 11 | 11 | B.1.36.12 | 0.105769 |
S | 939 | S939F | tCt | tTt | 11 | 11 | B.1.408 | 0.04059 |
S | 939 | S939F | tCt | tTt | 10 | 10 | AY.106 | 0.003349 |
S | 939 | S939F | tCt | tTt | 10 | 10 | AY.46.4 | 0.001645 |
S | 939 | S939F | tCt | tTt | 10 | 10 | AY.59 | 0.005297 |
S | 939 | S939F | tCt | tTt | 10 | 10 | B.1.177.44 | 0.005189 |
S | 939 | S939F | tCt | tTt | 10 | 10 | B.1.427 | 0.000505 |
S | 939 | S939F | tCt | tTt | 10 | 10 | B.1.517 | 0.00427 |
S | 939 | S939F | tCt | tTt | 9 | 9 | A.1 | 0.002537 |
S | 939 | S939F | tCt | tTt | 9 | 9 | AY.45 | 0.001095 |
S | 939 | S939F | tCt | tTt | 9 | 9 | AY.6 | 0.00037 |
S | 939 | S939F | tCt | tTt | 9 | 9 | B.1.177.86 | 0.001651 |
S | 939 | S939F | tCt | tTt | 9 | 9 | B.1.240 | 0.00194 |
S | 939 | S939F | tCt | tTt | 9 | 9 | B.1.617.1 | 0.001161 |
S | 939 | S939F | tCt | tTt | 8 | 8 | AY.33 | 0.000534 |
S | 939 | S939F | tCt | tTt | 8 | 8 | B.1.1.306 | 0.003507 |
S | 939 | S939F | tCt | tTt | 8 | 8 | B.1.239 | 0.009768 |
S | 939 | S939F | tCt | tTt | 8 | 8 | B.1.422 | 0.006499 |
S | 939 | S939F | tCt | tTt | 8 | 8 | B.1.595.3 | 0.210526 |
S | 939 | S939F | tCt | tTt | 8 | 8 | D.2 | 0.0006 |
S | 939 | S939F | tCt | tTt | 8 | 8 | P.1.12 | 0.003872 |
S | 939 | S939F | tCt | tTt | 7 | 7 | AY.14 | 0.000616 |
S | 939 | S939F | tCt | tTt | 7 | 7 | AY.5.4 | 0.001937 |
S | 939 | S939F | tCt | tTt | 7 | 7 | AY.9 | 0.000473 |
S | 939 | S939F | tCt | tTt | 7 | 7 | B.1.177.65 | 0.004657 |
S | 939 | S939F | tCt | tTt | 7 | 7 | B.1.177.69 | 0.010386 |
S | 939 | S939F | tCt | tTt | 7 | 7 | B.1.623 | 0.003755 |
S | 939 | S939F | tCt | tTt | 7 | 7 | B.1.625 | 0.016471 |
S | 939 | S939F | tCt | tTt | 6 | 6 | AY.113 | 0.000854 |
S | 939 | S939F | tCt | tTt | 6 | 6 | AY.120 | 0.000223 |
S | 939 | S939F | tCt | tTt | 6 | 6 | AY.47 | 0.000187 |
S | 939 | S939F | tCt | tTt | 6 | 6 | AY.61 | 0.000629 |
S | 939 | S939F | tCt | tTt | 6 | 6 | AY.68 | 0.001642 |
S | 939 | S939F | tCt | tTt | 6 | 6 | AY.75.1 | 0.001082 |
S | 939 | S939F | tCt | tTt | 6 | 6 | B.1.36.29 | 0.003104 |
S | 939 | S939F | tCt | tTt | 6 | 6 | B.1.369 | 0.001711 |
S | 939 | S939F | tCt | tTt | 6 | 6 | B.1.438.1 | 0.000644 |
S | 939 | S939F | tCt | tTt | 6 | 6 | C.37 | 0.000696 |
S | 939 | S939F | tCt | tTt | 5 | 5 | AY.107 | 0.00233 |
S | 939 | S939F | tCt | tTt | 5 | 5 | AY.118 | 0.000313 |
S | 939 | S939F | tCt | tTt | 5 | 5 | AY.23 | 0.000349 |
S | 939 | S939F | tCt | tTt | 5 | 5 | AY.54 | 0.000477 |
S | 939 | S939F | tCt | tTt | 5 | 5 | AY.58 | 0.004537 |
S | 939 | S939F | tCt | tTt | 5 | 5 | B.1.1.222 | 0.00102 |
S | 939 | S939F | tCt | tTt | 5 | 5 | B.1.227 | 0.238095 |
S | 939 | S939F | tCt | tTt | 5 | 5 | B.1.466.2 | 0.001956 |
S | 939 | S939F | tCt | tTt | 5 | 5 | B.1.468 | 0.028571 |
S | 939 | S939F | tCt | tTt | 5 | 5 | B.1.527 | 0.018519 |
S | 939 | S939F | tCt | tTt | 5 | 5 | B.1.575 | 0.001517 |
S | 939 | S939F | tCt | tTt | 5 | 5 | B.1.609 | 0.002397 |
S | 939 | S939F | tCt | tTt | 5 | 5 | B.1.637 | 0.000365 |
S | 939 | S939F | tCt | tTt | 4 | 4 | AY.13 | 0.000644 |
S | 939 | S939F | tCt | tTt | 4 | 4 | AY.52 | 0.003257 |
S | 939 | S939F | tCt | tTt | 4 | 4 | AY.73 | 0.002661 |
S | 939 | S939F | tCt | tTt | 4 | 4 | AY.88 | 0.003537 |
S | 939 | S939F | tCt | tTt | 4 | 4 | B.1.1.216 | 0.003562 |
S | 939 | S939F | tCt | tTt | 4 | 4 | B.1.1.243 | 0.016327 |
S | 939 | S939F | tCt | tTt | 4 | 4 | B.1.1.28 | 0.001245 |
S | 939 | S939F | tCt | tTt | 4 | 4 | B.1.1.311 | 0.001433 |
S | 939 | S939F | tCt | tTt | 4 | 4 | B.1.1.369 | 0.001785 |
S | 939 | S939F | tCt | tTt | 4 | 4 | B.1.1.521 | 0.02139 |
S | 939 | S939F | tCt | tTt | 4 | 4 | B.1.110.3 | 0.002874 |
S | 939 | S939F | tCt | tTt | 4 | 4 | B.1.177.32 | 0.005398 |
S | 939 | S939F | tCt | tTt | 4 | 4 | B.1.177.54 | 0.002426 |
S | 939 | S939F | tCt | tTt | 4 | 4 | B.1.36.1 | 0.004561 |
S | 939 | S939F | tCt | tTt | 4 | 4 | B.1.36.18 | 0.001681 |
S | 939 | S939F | tCt | tTt | 4 | 4 | B.1.470 | 0.005618 |
S | 939 | S939F | tCt | tTt | 4 | 4 | B.1.471 | 0.010929 |
S | 939 | S939F | tCt | tTt | 4 | 4 | B.1.499 | 0.004202 |
S | 939 | S939F | tCt | tTt | 4 | 4 | Q.4 | 0.001819 |
S | 939 | S939F | tCt | tTt | 3 | 3 | AY.120.2 | 0.003856 |
S | 939 | S939F | tCt | tTt | 3 | 3 | AY.2 | 0.001068 |
S | 939 | S939F | tCt | tTt | 3 | 3 | AY.4.2.1 | 0.000447 |
S | 939 | S939F | tCt | tTt | 3 | 3 | AY.64 | 0.001786 |
S | 939 | S939F | tCt | tTt | 3 | 3 | AY.93 | 0.000819 |
S | 939 | S939F | tCt | tTt | 3 | 3 | AY.98.1 | 0.000145 |
S | 939 | S939F | tCt | tTt | 3 | 3 | B.1.1.10 | 0.003344 |
S | 939 | S939F | tCt | tTt | 3 | 3 | B.1.1.153 | 0.003286 |
S | 939 | S939F | tCt | tTt | 3 | 3 | B.1.1.214 | 0.000166 |
S | 939 | S939F | tCt | tTt | 3 | 3 | B.1.1.305 | 0.011583 |
S | 939 | S939F | tCt | tTt | 3 | 3 | B.1.1.316 | 0.002775 |
S | 939 | S939F | tCt | tTt | 3 | 3 | B.1.1.37 | 0.000579 |
S | 939 | S939F | tCt | tTt | 3 | 3 | B.1.1.75 | 0.031915 |
S | 939 | S939F | tCt | tTt | 3 | 3 | B.1.170 | 0.012931 |
S | 939 | S939F | tCt | tTt | 3 | 3 | B.1.351.2 | 0.000908 |
S | 939 | S939F | tCt | tTt | 3 | 3 | B.1.420 | 0.03125 |
S | 939 | S939F | tCt | tTt | 3 | 3 | B.1.576 | 0.00272 |
S | 939 | S939F | tCt | tTt | 3 | 3 | B.1.627 | 0.006061 |
S | 939 | S939F | tCt | tTt | 3 | 3 | B.3 | 0.002492 |
S | 939 | S939F | tCt | tTt | 3 | 3 | N.5 | 0.0053 |
S | 939 | S939F | tCt | tTt | 3 | 3 | P.1.1 | 0.000953 |
S | 939 | S939F | tCt | tTt | 3 | 3 | P.1.15 | 0.000697 |
S | 939 | S939F | tCt | tTt | 3 | 3 | P.1.7 | 0.000958 |
S | 939 | S939F | tCt | tTt | 2 | 2 | A.2.5.1 | 0.009615 |
S | 939 | S939F | tCt | tTt | 2 | 2 | A.2.5.2 | 0.003145 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AD.2 | 0.000438 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.108 | 0.002205 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.110 | 0.000225 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.111 | 0.000366 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.16.1 | 0.00094 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.28 | 0.003781 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.29.1 | 0.000441 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.3.1 | 0.000171 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.30 | 0.000791 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.37 | 0.000632 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.48 | 0.00093 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.5.3 | 0.000675 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.65 | 0.001066 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.69 | 0.000373 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.89 | 0.009804 |
S | 939 | S939F | tCt | tTt | 2 | 2 | AY.92 | 0.000575 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.1.180 | 0.021505 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.1.217 | 0.007273 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.1.266 | 0.02439 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.1.279 | 0.002242 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.1.291 | 0.001485 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.1.317 | 0.000823 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.1.326 | 0.003521 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.1.333 | 0.002153 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.1.372 | 0.001377 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.1.404 | 0.031746 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.1.420 | 0.002012 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.1.448 | 0.004065 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.1.528 | 0.009615 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.1.63 | 0.000772 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.111 | 0.00235 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.177.15 | 0.001262 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.177.7 | 0.00033 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.210 | 0.004264 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.223 | 0.005556 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.234 | 0.000264 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.241 | 0.001623 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.267 | 0.037037 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.305 | 0.004301 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.311 | 0.000549 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.36.36 | 0.001204 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.36.8 | 0.002 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.404 | 0.002604 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.497 | 0.00063 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.571 | 0.019417 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.575.1 | 0.004878 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.1.577 | 0.001375 |
S | 939 | S939F | tCt | tTt | 2 | 2 | B.40 | 0.000729 |
S | 939 | S939F | tCt | tTt | 2 | 2 | C.23 | 0.011628 |
S | 939 | S939F | tCt | tTt | 2 | 2 | C.36.3.1 | 0.005435 |
S | 939 | S939F | tCt | tTt | 2 | 2 | P.1.10 | 0.000539 |
S | 939 | S939F | tCt | tTt | 2 | 2 | P.1.17 | 0.000324 |
S | 939 | S939F | tCt | tTt | 2 | 2 | Q.2 | 0.001227 |
S | 939 | S939F | tCt | tTt | 1 | 1 | A.2 | 0.000662 |
S | 939 | S939F | tCt | tTt | 1 | 1 | A.21 | 0.00277 |
S | 939 | S939F | tCt | tTt | 1 | 1 | A.23.1 | 0.000704 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AT.1 | 0.005128 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.101 | 0.00049 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.114 | 0.000231 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.116 | 0.000287 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.116.1 | 0.000311 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.120.1 | 0.000321 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.19 | 0.00114 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.23.1 | 0.000417 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.32 | 0.000532 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.34 | 0.000097 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.4.4 | 0.000409 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.46.2 | 0.000635 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.46.6 | 0.000072 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.53 | 0.000288 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.55 | 0.000917 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.56 | 0.001605 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.57 | 0.000656 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.62 | 0.000436 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.67 | 0.000464 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.7.2 | 0.000559 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.70 | 0.000209 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.72 | 0.001361 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.74 | 0.000116 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.77 | 0.001127 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.8 | 0.000606 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.81 | 0.001992 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.82 | 0.001357 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.9.1 | 0.000084 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.94 | 0.000443 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AY.97 | 0.001701 |
S | 939 | S939F | tCt | tTt | 1 | 1 | AZ.2 | 0.000821 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.134 | 0.011364 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.161 | 0.003534 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.163 | 0.007634 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.176 | 0.000439 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.204 | 0.00304 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.263 | 0.001558 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.277 | 0.000759 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.284 | 0.000107 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.298 | 0.000862 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.331 | 0.011628 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.344 | 0.010753 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.370 | 0.012658 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.4 | 0.002976 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.416 | 0.000905 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.419 | 0.007407 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.432 | 0.001266 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.462 | 0.008621 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.507 | 0.008696 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.53 | 0.013699 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.1.70 | 0.000341 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.104 | 0.00369 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.119 | 0.010526 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.128 | 0.000635 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.139 | 0.000733 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.146 | 0.004237 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.160.15 | 0.00495 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.160.16 | 0.000929 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.177.14 | 0.006098 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.177.4 | 0.000211 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.177.48 | 0.003125 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.177.5 | 0.001242 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.177.53 | 0.002392 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.177.6 | 0.000977 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.177.72 | 0.00339 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.177.77 | 0.000726 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.177.87 | 0.000728 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.201 | 0.005682 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.206 | 0.000816 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.214.2 | 0.0006 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.237 | 0.004975 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.247 | 0.014925 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.298 | 0.002114 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.3 | 0.002618 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.324 | 0.001605 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.35 | 0.008475 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.356 | 0.001727 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.36.22 | 0.001208 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.36.7 | 0.004 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.361 | 0.001289 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.362 | 0.001541 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.389 | 0.001002 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.393 | 0.028571 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.400 | 0.000429 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.441 | 0.009615 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.443 | 0.004673 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.462 | 0.007246 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.463 | 0.008065 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.516 | 0.001957 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.540 | 0.009709 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.551 | 0.00129 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.564 | 0.000426 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.582 | 0.000491 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.595 | 0.000261 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.596.1 | 0.009346 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.597 | 0.00463 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.604 | 0.017241 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.605 | 0.005952 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.610 | 0.003546 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.626 | 0.005714 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.1.8 | 0.001972 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.3.1 | 0.001658 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.4 | 0.002208 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.46 | 0.020833 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.53 | 0.011765 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.56 | 0.028571 |
S | 939 | S939F | tCt | tTt | 1 | 1 | B.6 | 0.00091 |
S | 939 | S939F | tCt | tTt | 1 | 1 | C.1 | 0.002392 |
S | 939 | S939F | tCt | tTt | 1 | 1 | C.16 | 0.00106 |
S | 939 | S939F | tCt | tTt | 1 | 1 | C.35 | 0.000774 |
S | 939 | S939F | tCt | tTt | 1 | 1 | C.36 | 0.000911 |
S | 939 | S939F | tCt | tTt | 1 | 1 | C.36.3 | 0.000567 |
S | 939 | S939F | tCt | tTt | 1 | 1 | N.9 | 0.005952 |
S | 939 | S939F | tCt | tTt | 1 | 1 | Q.6 | 0.006623 |
S | 939 | S939F | tCt | tTt | 1 | 1 | U.2 | 0.008772 |
S | 939 | S939F | tCt | tTt | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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