CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = S689R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S689S689RnonsynagTagG5482850.52007323627-23629
S689S689RnonsynAgtCgt5482530.46167923627-23629
S689S689RnonsynagTagA548100.018248223627-23629

Details of the mutation S689R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S689S689RagTagG285548All0.000055
S689S689RAgtCgt253548All0.000048
S689S689RagTagA10548All0.000002
S689S689RAgtCgt191201B.1.3510.005678
S689S689RagTagA5201B.1.3510.000149
S689S689RagTagG5201B.1.3510.000149
S689S689RagTagG9595B.1.4590.387755
S689S689RagTagG6262B.1.1.3750.738095
S689S689RAgtCgt2626P.1.150.006041
S689S689RagTagG2121B.10.000192
S689S689RagTagG1516B.1.1.70.000013
S689S689RagTagA116B.1.1.70.000001
S689S689RagTagG1616B.1.4270.000808
S689S689RagTagG1212AY.39.10.000475
S689S689RagTagG1010B.1.1.2910.007424
S689S689RagTagG99AY.40.000014
S689S689RAgtCgt47AY.1030.000025
S689S689RagTagG37AY.1030.000019
S689S689RagTagG57AY.430.000022
S689S689RagTagA27AY.430.000009
S689S689RAgtCgt77B.1.617.20.000026
S689S689RagTagG77C.1.10.538462
S689S689RagTagG66P.10.000095
S689S689RAgtCgt45AY.1020.000106
S689S689RagTagG15AY.1020.000027
S689S689RAgtCgt33A.2.50.001497
S689S689RAgtCgt33AY.1160.00086
S689S689RAgtCgt33AY.1200.000112
S689S689RagTagG22AY.3.10.000171
S689S689RAgtCgt12AY.390.000025
S689S689RagTagG12AY.390.000025
S689S689RAgtCgt22AY.440.000012
S689S689RAgtCgt22B.1.360.000292
S689S689RagTagG110.055556
S689S689RAgtCgt11AY.240.000431
S689S689RAgtCgt11AY.250.000006
S689S689RagTagG11AY.300.000396
S689S689RAgtCgt11AY.360.000148
S689S689RagTagG11AY.4.20.000022
S689S689RagTagG11AY.4.2.10.000149
S689S689RagTagG11AY.460.000104
S689S689RAgtCgt11AY.9.20.000037
S689S689RAgtCgt11AY.960.002075
S689S689RagTagG11AY.99.20.000092
S689S689RagTagG11B.1.10.000018
S689S689RAgtCgt11B.1.1.3260.001761
S689S689RagTagG11B.1.1.3480.000796
S689S689RAgtCgt11B.1.160.160.000929
S689S689RagTagG11B.1.1770.000013
S689S689RagTagG11B.1.177.860.000183
S689S689RagTagG11B.1.2340.000132
S689S689RagTagA11B.1.5260.000024
S689S689RagTagG11B.1.5330.009615
S689S689RagTagA11B.1.5900.004545
S689S689RagTagG11B.1.621.10.000506
S689S689RagTagG11C.60.037037
S689S689RagTagG11D.20.000075