CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = S477S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S477S477SsynagCagT18490184870.99983822991-22993
S477S477SsynAGcTCc1849030.0001622522991-22993

Details of the mutation S477S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S477S477SagCagT1848718490All0.003536
S477S477SAGcTCc318490All0.000001
S477S477SagCagT81108110B.1.617.20.030538
S477S477SagCagT55135513AY.430.024425
S477S477SagCagT514514AY.390.012702
S477S477SagCagT431431AY.40.000671
S477S477SagCagT427427B.1.1.70.000382
S477S477SagCagT353353AY.440.002149
S477S477SagCagT233233AY.250.001401
S477S477SagCagT228228AY.1020.006045
S477S477SagCagT125125AY.1030.000776
S477S477SagCagT125125AY.1190.004414
S477S477SagCagT121121B.1.5410.535398
S477S477SagCagT116116AY.720.157823
S477S477SagCagT114114B.1.1.4290.525346
S477S477SagCagT106106B.1.20.000933
S477S477SagCagT104104AY.120.03287
S477S477SagCagT8585B.1.10.001542
S477S477SagCagT8383AY.460.008639
S477S477SagCagT7979AY.200.00307
S477S477SagCagT6969AY.30.000686
S477S477SagCagT6565AY.420.002615
S477S477SagCagT6262AY.5.30.020918
S477S477SagCagT5151AY.320.027157
S477S477SagCagT4747AY.1160.013479
S477S477SagCagT4646AY.330.003072
S477S477SagCagT4545AY.1200.001673
S477S477SagCagT4242B.1.4290.000988
S477S477SagCagT4141AY.5.40.011345
S477S477SagCagT4040AY.120.10.012841
S477S477SagCagT3838AY.980.003002
S477S477SagCagT3737AY.1110.006777
S477S477SagCagT3636AY.46.60.002599
S477S477SagCagT3232AY.230.002232
S477S477SagCagT2730P.10.000425
S477S477SAGcTCc330P.10.000047
S477S477SagCagT2828AY.1000.001288
S477S477SagCagT2828B.1.6250.065882
S477S477SagCagT2424AY.50.000496
S477S477SagCagT2222AY.1170.001859
S477S477SagCagT2222AY.470.000684
S477S477SagCagT2222B.1.1770.00029
S477S477SagCagT2121AY.1060.007033
S477S477SagCagT2121B.10.000192
S477S477SagCagT2020P.20.003733
S477S477SagCagT1919AY.1180.00119
S477S477SagCagT1919C.370.002205
S477S477SagCagT1818AY.840.007874
S477S477SagCagT1717AY.410.004997
S477S477SagCagT1717AY.920.004884
S477S477SagCagT1515AY.1210.00203
S477S477SagCagT1515AY.450.001825
S477S477SagCagT1515AY.770.016911
S477S477SagCagT1515B.1.177.860.002752
S477S477SagCagT1414AY.1130.001993
S477S477SagCagT1414AY.740.001619
S477S477SagCagT1313B.1.4270.000656
S477S477SagCagT1212AY.260.00034
S477S477SagCagT1111AY.46.10.011294
S477S477SagCagT1111AY.750.000616
S477S477SagCagT1111AY.990.011542
S477S477SagCagT1111B.1.1.2140.00061
S477S477SagCagT1010AY.480.004651
S477S477SagCagT1010AY.590.005297
S477S477SagCagT1010AY.9.20.000367
S477S477SagCagT1010M.10.232558
S477S477SagCagT99AY.34.10.004589
S477S477SagCagT99B.1.2100.01919
S477S477SagCagT99B.1.3510.000268
S477S477SagCagT88AY.270.000518
S477S477SagCagT88AY.290.000126
S477S477SagCagT88AY.360.001186
S477S477SagCagT88AY.4.20.000174
S477S477SagCagT88AY.640.004762
S477S477SagCagT88AY.98.10.000387
S477S477SagCagT88B.1.2210.000568
S477S477SagCagT88C.350.006192
S477S477SagCagT77AY.1140.001618
S477S477SagCagT77AY.39.10.000277
S477S477SagCagT77AY.60.000288
S477S477SagCagT77AY.950.005327
S477S477SagCagT77B.1.2580.000466
S477S477SagCagT66AY.3.10.000512
S477S477SagCagT66AY.550.005505
S477S477SagCagT66AY.670.002786
S477S477SagCagT66B.1.5170.002562
S477S477SagCagT66P.1.70.001916
S477S477SagCagT55A.270.008278
S477S477SagCagT55AY.100.00265
S477S477SagCagT55AY.1070.00233
S477S477SagCagT55AY.23.10.002087
S477S477SagCagT55AY.4.30.004209
S477S477SagCagT55AY.46.20.003177
S477S477SagCagT55AY.580.004537
S477S477SagCagT55AY.75.10.000902
S477S477SagCagT55AY.890.02451
S477S477SagCagT55B0.000639
S477S477SagCagT55B.1.1.280.001556
S477S477SagCagT55B.1.2340.00066
S477S477SagCagT55B.1.5260.000118
S477S477SagCagT55B.1.6290.066667
S477S477SagCagT55B.1.6370.000365
S477S477SagCagT55Q.30.000725
S477S477SagCagT44AY.1100.000451
S477S477SagCagT44AY.350.000932
S477S477SagCagT44AY.530.00115
S477S477SagCagT44AY.610.000419
S477S477SagCagT44AY.680.001095
S477S477SagCagT44AY.860.00332
S477S477SagCagT44AY.9.10.000335
S477S477SagCagT44B.1.1.3540.017544
S477S477SagCagT44B.1.1.4340.001394
S477S477SagCagT44B.1.177.230.012945
S477S477SagCagT44P.1.100.001078
S477S477SagCagT33AY.1080.003308
S477S477SagCagT33AY.140.000264
S477S477SagCagT33AY.29.10.000662
S477S477SagCagT33AY.520.002443
S477S477SagCagT33AY.870.002498
S477S477SagCagT33AY.910.002191
S477S477SagCagT33B.1.1.2550.009091
S477S477SagCagT33B.1.1.2940.003797
S477S477SagCagT33B.1.1.630.001157
S477S477SagCagT33B.1.177.880.037037
S477S477SagCagT33B.1.258.140.002941
S477S477SagCagT33B.1.466.20.001174
S477S477SagCagT33B.1.5250.000339
S477S477SagCagT33B.1.5960.000261
S477S477SagCagT33B.1.6090.001438
S477S477SagCagT220.111111
S477S477SagCagT22A.2.50.000998
S477S477SagCagT22AY.10.000791
S477S477SagCagT22AY.1050.001286
S477S477SagCagT22AY.1090.001479
S477S477SagCagT22AY.110.002677
S477S477SagCagT22AY.190.002281
S477S477SagCagT22AY.210.003795
S477S477SagCagT22AY.46.40.000329
S477S477SagCagT22AY.540.000191
S477S477SagCagT22AY.560.00321
S477S477SagCagT22AY.730.001331
S477S477SagCagT22AY.930.000546
S477S477SagCagT22AY.940.000885
S477S477SagCagT22B.1.1.10.000653
S477S477SagCagT22B.1.1.2690.002706
S477S477SagCagT22B.1.1.3000.021505
S477S477SagCagT22B.1.1.3110.000716
S477S477SagCagT22B.1.1.3690.000892
S477S477SagCagT22B.1.1.5000.04
S477S477SagCagT22B.1.1660.016949
S477S477SagCagT22B.1.177.440.001038
S477S477SagCagT22B.1.177.650.001331
S477S477SagCagT22B.1.2430.000139
S477S477SagCagT22B.1.360.000292
S477S477SagCagT22B.1.5600.009259
S477S477SagCagT22B.1.575.10.004878
S477S477SagCagT22P.30.00319
S477S477SagCagT22Q.40.00091
S477S477SagCagT22S.10.009901
S477S477SagCagT11AY.1040.001984
S477S477SagCagT11AY.20.000356
S477S477SagCagT11AY.300.000396
S477S477SagCagT11AY.340.000097
S477S477SagCagT11AY.370.000316
S477S477SagCagT11AY.380.000499
S477S477SagCagT11AY.4.2.10.000149
S477S477SagCagT11AY.4.40.000409
S477S477SagCagT11AY.4.50.000107
S477S477SagCagT11AY.510.000909
S477S477SagCagT11AY.600.000938
S477S477SagCagT11AY.620.000436
S477S477SagCagT11AY.650.000533
S477S477SagCagT11AY.7.10.000113
S477S477SagCagT11AY.760.004831
S477S477SagCagT11AY.790.001211
S477S477SagCagT11AY.850.000427
S477S477SagCagT11AY.90.000068
S477S477SagCagT11AY.900.000684
S477S477SagCagT11AY.91.10.004065
S477S477SagCagT11AY.960.002075
S477S477SagCagT11AY.970.001701
S477S477SagCagT11AY.99.20.000092
S477S477SagCagT11B.1.1.1210.002427
S477S477SagCagT11B.1.1.1610.003534
S477S477SagCagT11B.1.1.1970.037037
S477S477SagCagT11B.1.1.2370.005405
S477S477SagCagT11B.1.1.2840.000107
S477S477SagCagT11B.1.1.3030.002762
S477S477SagCagT11B.1.1.3060.000438
S477S477SagCagT11B.1.1.3160.000925
S477S477SagCagT11B.1.1.3170.000412
S477S477SagCagT11B.1.1.3760.005952
S477S477SagCagT11B.1.1.4090.002833
S477S477SagCagT11B.1.1.5190.00004
S477S477SagCagT11B.1.1.610.008772
S477S477SagCagT11B.1.1.700.000341
S477S477SagCagT11B.1.177.350.000691
S477S477SagCagT11B.1.177.750.001041
S477S477SagCagT11B.1.2220.001692
S477S477SagCagT11B.1.2400.000216
S477S477SagCagT11B.1.2560.017241
S477S477SagCagT11B.1.2890.00266
S477S477SagCagT11B.1.3320.003497
S477S477SagCagT11B.1.3400.004292
S477S477SagCagT11B.1.3570.009524
S477S477SagCagT11B.1.36.290.000517
S477S477SagCagT11B.1.3780.006849
S477S477SagCagT11B.1.4260.001009
S477S477SagCagT11B.1.4960.125
S477S477SagCagT11B.1.5400.009709
S477S477SagCagT11B.1.5680.001111
S477S477SagCagT11B.1.575.20.004808
S477S477SagCagT11B.1.5950.000261
S477S477SagCagT11B.1.617.10.000129
S477S477SagCagT11B.1.619.10.000641
S477S477SagCagT11B.1.6270.00202
S477S477SagCagT11B.1.80.001972
S477S477SagCagT11C.37.10.002618
S477S477SagCagT11P.1.120.000484
S477S477SagCagT11P.1.60.001946
S477S477SagCagT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.