CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = S255S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S255S255SsyntcTtcA3711480.39892222325-22327
S255S255SsyntcTtcC3711420.38274922325-22327
S255S255SsyntcTtcG371810.21832922325-22327

Details of the mutation S255S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S255S255StcTtcA148371All0.000028
S255S255StcTtcC142371All0.000027
S255S255StcTtcG81371All0.000015
S255S255StcTtcA130133B.1.4290.003059
S255S255StcTtcG2133B.1.4290.000047
S255S255StcTtcC1133B.1.4290.000024
S255S255StcTtcG3030N.100.882353
S255S255StcTtcC2727B.1.2340.003562
S255S255StcTtcC1521AY.1030.000093
S255S255StcTtcG621AY.1030.000037
S255S255StcTtcC1220B.1.1.70.000011
S255S255StcTtcA420B.1.1.70.000004
S255S255StcTtcG420B.1.1.70.000004
S255S255StcTtcC913B.10.000082
S255S255StcTtcG413B.10.000037
S255S255StcTtcC810B.1.617.20.00003
S255S255StcTtcG210B.1.617.20.000008
S255S255StcTtcC89AY.750.000448
S255S255StcTtcA19AY.750.000056
S255S255StcTtcC48AY.40.000006
S255S255StcTtcG28AY.40.000003
S255S255StcTtcA28AY.40.000003
S255S255StcTtcC58B.1.20.000044
S255S255StcTtcG38B.1.20.000026
S255S255StcTtcC77B.1.10.000127
S255S255StcTtcG66B.1.1.330.002525
S255S255StcTtcC66B.1.1770.000079
S255S255StcTtcC45AY.260.000113
S255S255StcTtcG15AY.260.000028
S255S255StcTtcA45AY.30.00004
S255S255StcTtcG15AY.30.00001
S255S255StcTtcC44A.280.010582
S255S255StcTtcG44AY.1190.000141
S255S255StcTtcC33AY.23.10.001252
S255S255StcTtcC23AY.430.000009
S255S255StcTtcA13AY.430.000004
S255S255StcTtcG33B.1.1.1740.010135
S255S255StcTtcC33B.1.466.20.001174
S255S255StcTtcC22AY.230.000139
S255S255StcTtcC12AY.250.000006
S255S255StcTtcG12AY.250.000006
S255S255StcTtcC22AY.330.000134
S255S255StcTtcG22AY.360.000296
S255S255StcTtcG22B.1.1.2140.000111
S255S255StcTtcC22B.1.1.5190.000079
S255S255StcTtcA22B.1.4700.002809
S255S255StcTtcA12D.20.000075
S255S255StcTtcG12D.20.000075
S255S255StcTtcC12P.1.140.000048
S255S255StcTtcG12P.1.140.000048
S255S255StcTtcC11AY.1000.000046
S255S255StcTtcG11AY.1170.000085
S255S255StcTtcG11AY.200.000039
S255S255StcTtcC11AY.440.000006
S255S255StcTtcG11AY.46.40.000165
S255S255StcTtcC11AY.50.000021
S255S255StcTtcC11AY.9.2.10.001976
S255S255StcTtcC11B.1.1.250.000569
S255S255StcTtcC11B.1.177.440.000519
S255S255StcTtcA11B.1.2210.000071
S255S255StcTtcC11B.1.2430.00007
S255S255StcTtcC11B.1.2580.000067
S255S255StcTtcC11B.1.3110.000275
S255S255StcTtcC11B.1.36.290.000517
S255S255StcTtcA11B.1.3670.000792
S255S255StcTtcG11B.1.3690.000285
S255S255StcTtcC11B.1.4000.000429
S255S255StcTtcA11B.1.4270.00005
S255S255StcTtcC11B.1.5250.000113
S255S255StcTtcC11B.1.5750.000303
S255S255StcTtcG11B.6.80.008264
S255S255StcTtcC11L.20.011364
S255S255StcTtcC11P.10.000016
S255S255StcTtcC11P.1.10.000318
S255S255StcTtcG11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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