CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = S255P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S255S255PnonsynTctCct2432410.9917722325-22327
S255S255PnonsynTcTCcC24320.0082304522325-22327

Details of the mutation S255P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S255S255PTctCct241243All0.000046
S255S255PTcTCcC2243All0
S255S255PTctCct140140AY.250.000842
S255S255PTctCct1616B.1.1.3890.09697
S255S255PTctCct1313B.1.20.000114
S255S255PTctCct1212B.1.1.70.000011
S255S255PTctCct77B.10.000064
S255S255PTctCct55AY.470.000156
S255S255PTctCct55B.1.6370.000365
S255S255PTctCct44B.1.1.2790.004484
S255S255PTctCct33AY.430.000013
S255S255PTctCct33B.1.5260.000071
S255S255PTctCct33B.1.617.20.000011
S255S255PTcTCcC220.111111
S255S255PTctCct22AY.260.000057
S255S255PTctCct22AY.40.000003
S255S255PTctCct22AY.730.001331
S255S255PTctCct22B.1.1600.000062
S255S255PTctCct22B.1.1700.008621
S255S255PTctCct22B.1.6210.000177
S255S255PTctCct22P.10.000032
S255S255PTctCct11AY.1020.000027
S255S255PTctCct11AY.1030.000006
S255S255PTctCct11AY.440.000006
S255S255PTctCct11AY.50.000021
S255S255PTctCct11AY.610.000105
S255S255PTctCct11AY.7.10.000113
S255S255PTctCct11AY.750.000056
S255S255PTctCct11B.1.1.100.001115
S255S255PTctCct11B.1.1.3180.000302
S255S255PTctCct11B.1.1770.000013
S255S255PTctCct11B.1.177.70.000165
S255S255PTctCct11B.1.2580.000067
S255S255PTctCct11B.1.3510.00003
S255S255PTctCct11B.1.360.000146
S255S255PTctCct11B.1.4270.00005
S255S255PTctCct11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.