CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = S172S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S172S172SsyntcTtcC9627370.76611222076-22078
S172S172SsyntcTtcG9622100.21829522076-22078
S172S172SsyntcTtcA962140.01455322076-22078
S172S172SsynTCTAGC96210.001039522076-22078

Details of the mutation S172S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S172S172StcTtcC737962All0.000141
S172S172StcTtcG210962All0.00004
S172S172StcTtcA14962All0.000003
S172S172STCTAGC1962All0
S172S172StcTtcC514520B.1.1.70.00046
S172S172StcTtcG5520B.1.1.70.000004
S172S172StcTtcA1520B.1.1.70.000001
S172S172StcTtcG9393B.1.5910.989362
S172S172StcTtcC5454P.1.100.014551
S172S172StcTtcG3031B.1.5250.003395
S172S172STCTAGC131B.1.5250.000113
S172S172StcTtcC2930AY.40.000045
S172S172StcTtcG130AY.40.000002
S172S172StcTtcC2626B.1.3610.033505
S172S172StcTtcG1720B.1.4290.0004
S172S172StcTtcC220B.1.4290.000047
S172S172StcTtcA120B.1.4290.000024
S172S172StcTtcG1718B.1.1.5190.000675
S172S172StcTtcA118B.1.1.5190.00004
S172S172StcTtcC1013B.1.20.000088
S172S172StcTtcG313B.1.20.000026
S172S172StcTtcC612B.10.000055
S172S172StcTtcG612B.10.000055
S172S172StcTtcC1010AY.440.000061
S172S172StcTtcC77AY.250.000042
S172S172StcTtcG47AY.50.000083
S172S172StcTtcC37AY.50.000062
S172S172StcTtcC77P.1.120.003388
S172S172StcTtcC56AY.1030.000031
S172S172StcTtcG16AY.1030.000006
S172S172StcTtcG66B.1.177.40.001266
S172S172StcTtcC66B.1.617.20.000023
S172S172StcTtcC45AY.30.00004
S172S172StcTtcG15AY.30.00001
S172S172StcTtcC44AY.430.000018
S172S172StcTtcG44B.1.1600.000125
S172S172StcTtcC23AY.290.000032
S172S172StcTtcG13AY.290.000016
S172S172StcTtcC33B.1.1.2140.000166
S172S172StcTtcG33B.1.2650.003812
S172S172StcTtcG220.111111
S172S172StcTtcC12AY.1020.000027
S172S172StcTtcG12AY.1020.000027
S172S172StcTtcA22AY.1200.000074
S172S172StcTtcC22AY.200.000078
S172S172StcTtcG12AY.390.000025
S172S172StcTtcA12AY.390.000025
S172S172StcTtcC22AY.610.00021
S172S172StcTtcA22AY.690.000373
S172S172StcTtcC22AY.860.00166
S172S172StcTtcC22B0.000256
S172S172StcTtcC22B.1.2340.000264
S172S172StcTtcC22B.1.36.20.021505
S172S172StcTtcC22P.10.000032
S172S172StcTtcC22Q.10.000253
S172S172StcTtcA11A0.000387
S172S172StcTtcG11AT.10.005128
S172S172StcTtcG11AY.1000.000046
S172S172StcTtcG11AY.1060.000335
S172S172StcTtcC11AY.1170.000085
S172S172StcTtcC11AY.160.00038
S172S172StcTtcC11AY.230.00007
S172S172StcTtcC11AY.23.10.000417
S172S172StcTtcC11AY.300.000396
S172S172StcTtcC11AY.330.000067
S172S172StcTtcC11AY.39.10.00004
S172S172StcTtcG11AY.4.20.000022
S172S172StcTtcC11AY.450.000122
S172S172StcTtcC11AY.46.30.000934
S172S172StcTtcG11AY.580.000907
S172S172StcTtcC11AY.590.00053
S172S172StcTtcA11AY.750.000056
S172S172StcTtcG11AY.850.000427
S172S172StcTtcC11AY.9.20.000037
S172S172StcTtcC11AY.900.000684
S172S172StcTtcC11B.1.10.000018
S172S172StcTtcC11B.1.1.2160.00089
S172S172StcTtcC11B.1.1.250.000569
S172S172StcTtcA11B.1.1.280.000311
S172S172StcTtcC11B.1.1770.000013
S172S172StcTtcC11B.1.177.100.000878
S172S172StcTtcC11B.1.177.230.003236
S172S172StcTtcA11B.1.177.560.000668
S172S172StcTtcA11B.1.177.70.000165
S172S172StcTtcC11B.1.220.001318
S172S172StcTtcA11B.1.258.170.000104
S172S172StcTtcC11B.1.3460.001311
S172S172StcTtcG11B.1.3510.00003
S172S172StcTtcG11B.1.360.000146
S172S172StcTtcG11B.1.4270.00005
S172S172StcTtcC11B.1.5260.000024
S172S172StcTtcG11B.1.5610.000397
S172S172StcTtcC11B.1.5760.000907
S172S172StcTtcG11B.1.5950.000261
S172S172StcTtcC11B.1.6090.000479
S172S172StcTtcC11B.1.617.10.000129
S172S172StcTtcC11B.1.6210.000089
S172S172StcTtcC11B.1.6370.000073
S172S172StcTtcG11C.370.000116
S172S172StcTtcG11C.380.008065
S172S172StcTtcC11P.1.10.000318
S172S172StcTtcG11P.30.001595
S172S172StcTtcC11Q.40.000455