CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = S1239T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1239S1239TnonsynaGtaCt2282270.99561425277-25279
S1239S1239TnonsynaGTaCC22810.0043859625277-25279

Details of the mutation S1239T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1239S1239TaGtaCt227228All0.000043
S1239S1239TaGTaCC1228All0
S1239S1239TaGtaCt7575B.1.1.70.000067
S1239S1239TaGtaCt2727P.1.140.001291
S1239S1239TaGtaCt2020B.1.20.000176
S1239S1239TaGtaCt88AY.340.000776
S1239S1239TaGtaCt88AY.40.000012
S1239S1239TaGtaCt88B.1.1.2770.00607
S1239S1239TaGtaCt88B.1.617.20.00003
S1239S1239TaGtaCt77AY.540.000667
S1239S1239TaGtaCt55AY.1190.000177
S1239S1239TaGtaCt55B.1.10.000091
S1239S1239TaGtaCt55B.1.5960.000436
S1239S1239TaGtaCt44AY.430.000018
S1239S1239TaGtaCt44B.1.177.210.000306
S1239S1239TaGtaCt33AY.1020.00008
S1239S1239TaGtaCt33AY.230.000209
S1239S1239TaGtaCt22AY.1060.00067
S1239S1239TaGtaCt22AY.250.000012
S1239S1239TaGtaCt22AY.30.00002
S1239S1239TaGtaCt22AY.440.000012
S1239S1239TaGtaCt22B.10.000018
S1239S1239TaGtaCt22B.1.3510.000059
S1239S1239TaGtaCt22B.1.4280.002041
S1239S1239TaGtaCt22P.70.008734
S1239S1239TaGtaCt11AY.1160.000287
S1239S1239TaGtaCt11AY.16.10.00047
S1239S1239TaGtaCt11AY.20.000356
S1239S1239TaGtaCt11AY.260.000028
S1239S1239TaGtaCt11AY.270.000065
S1239S1239TaGtaCt11AY.290.000016
S1239S1239TaGtaCt11AY.4.30.000842
S1239S1239TaGtaCt11AY.460.000104
S1239S1239TaGtaCt11AY.46.10.001027
S1239S1239TaGtaCt11AY.670.000464
S1239S1239TaGtaCt11AY.99.20.000092
S1239S1239TaGtaCt11B.1.1.250.000569
S1239S1239TaGtaCt11B.1.1.3690.000446
S1239S1239TaGTaCC11B.1.1.5230.001563
S1239S1239TaGtaCt11B.1.1.700.000341
S1239S1239TaGtaCt11B.1.110.30.000718
S1239S1239TaGtaCt11B.1.1770.000013
S1239S1239TaGtaCt11B.1.177.70.000165
S1239S1239TaGtaCt11B.1.3980.002976
S1239S1239TaGtaCt11P.10.000016
S1239S1239TaGtaCt11P.1.170.000162
S1239S1239TaGtaCt11Q.80.000165