CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = R346K

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S346R346KnonsynaGaaAa14782147710.99925622598-22600
S346R346KnonsynaGAaAG14782110.00074414822598-22600

Details of the mutation R346K within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S346R346KaGaaAa1477114782All0.002825
S346R346KaGAaAG1114782All0.000002
S346R346KaGaaAa1108011090B.1.6210.980791
S346R346KaGAaAG1011090B.1.6210.000885
S346R346KaGaaAa19421942B.1.621.10.982296
S346R346KaGaaAa259259B.1.1.70.000232
S346R346KaGaaAa173173B.10.001585
S346R346KaGaaAa165165B.1.2320.088662
S346R346KaGaaAa154154B.1.1.3480.122611
S346R346KaGaaAa128128B.1.415.10.969697
S346R346KaGaaAa100100B.1.2210.007103
S346R346KaGaaAa7979AY.1030.000491
S346R346KaGaaAa6868AY.330.004541
S346R346KaGaaAa4343B.1.5260.001011
S346R346KaGaaAa4040B.1.258.140.039216
S346R346KaGaaAa3939B.1.617.20.000147
S346R346KaGaaAa3636AY.430.000159
S346R346KaGaaAa3434B.1.6230.01824
S346R346KaGaaAa2626B.1.20.000229
S346R346KaGaaAa2525AY.440.000152
S346R346KaGaaAa2222P.10.000347
S346R346KaGaaAa2121B.1.1.5190.000834
S346R346KaGaaAa2020B.1.10.000363
S346R346KaGaaAa1515B.1.4290.000353
S346R346KaGaaAa1414B0.001789
S346R346KaGaaAa1414B.1.177.600.003058
S346R346KaGaaAa1212AY.1020.000318
S346R346KaGaaAa1212B.1.177.60.011719
S346R346KaGaaAa1111AY.40.000017
S346R346KaGaaAa1010B.1.360.001459
S346R346KaGaaAa99AY.230.000628
S346R346KaGaaAa89AY.250.000048
S346R346KaGAaAG19AY.250.000006
S346R346KaGaaAa88AY.200.000311
S346R346KaGaaAa88AY.390.000198
S346R346KaGaaAa66B.1.6300.031414
S346R346KaGaaAa55A.300.714286
S346R346KaGaaAa55B.1.2400.001078
S346R346KaGaaAa55B.1.2430.000348
S346R346KaGaaAa55B.1.3670.003962
S346R346KaGaaAa55B.1.5960.000436
S346R346KaGaaAa55B.1.6370.000365
S346R346KaGaaAa55P.1.150.001162
S346R346KaGaaAa44AY.1160.001147
S346R346KaGaaAa44AY.1190.000141
S346R346KaGaaAa44B.1.2580.000266
S346R346KaGaaAa44B.1.3510.000119
S346R346KaGaaAa44C.1.20.017021
S346R346KaGaaAa44P.1.170.000647
S346R346KaGaaAa44Q.80.00066
S346R346KaGaaAa33AY.20.001068
S346R346KaGaaAa33AY.260.000085
S346R346KaGaaAa33AY.46.60.000217
S346R346KaGaaAa33AY.99.20.000276
S346R346KaGaaAa33B.1.1.3060.001315
S346R346KaGaaAa33B.1.1.5230.004687
S346R346KaGaaAa33B.1.1770.00004
S346R346KaGaaAa33B.1.5640.001278
S346R346KaGaaAa33P.1.120.001452
S346R346KaGaaAa33P.1.140.000143
S346R346KaGaaAa22A0.000774
S346R346KaGaaAa22AY.160.000759
S346R346KaGaaAa22AY.30.00002
S346R346KaGaaAa22AY.50.000041
S346R346KaGaaAa22AY.680.000547
S346R346KaGaaAa22B.1.1.2670.020202
S346R346KaGaaAa22B.1.1.280.000622
S346R346KaGaaAa22B.1.1.3180.000604
S346R346KaGaaAa22B.1.177.730.001133
S346R346KaGaaAa22B.1.2340.000264
S346R346KaGaaAa22B.1.258.30.00335
S346R346KaGaaAa22B.1.3110.000549
S346R346KaGaaAa22B.1.3240.00321
S346R346KaGaaAa22B.1.4800.004975
S346R346KaGaaAa22B.1.5330.019231
S346R346KaGaaAa22B.1.564.10.003155
S346R346KaGaaAa22B.1.5950.000522
S346R346KaGaaAa22B.1.6330.083333
S346R346KaGaaAa22C.370.000232
S346R346KaGaaAa22Q.30.00029
S346R346KaGaaAa22R.10.00018
S346R346KaGaaAa11A.10.000282
S346R346KaGaaAa11A.2.40.003367
S346R346KaGaaAa11AY.1130.000142
S346R346KaGaaAa11AY.290.000016
S346R346KaGaaAa11AY.34.10.00051
S346R346KaGaaAa11AY.360.000148
S346R346KaGaaAa11AY.4.2.10.000149
S346R346KaGaaAa11AY.4.30.000842
S346R346KaGaaAa11AY.460.000104
S346R346KaGaaAa11AY.46.10.001027
S346R346KaGaaAa11AY.530.000288
S346R346KaGaaAa11AY.580.000907
S346R346KaGaaAa11AY.90.000068
S346R346KaGaaAa11AY.9.20.000037
S346R346KaGaaAa11AY.920.000287
S346R346KaGaaAa11AY.940.000443
S346R346KaGaaAa11B.1.1.10.000327
S346R346KaGaaAa11B.1.1.1890.001513
S346R346KaGaaAa11B.1.1.2140.000055
S346R346KaGaaAa11B.1.1.2360.006897
S346R346KaGaaAa11B.1.1.2840.000107
S346R346KaGaaAa11B.1.1.3540.004386
S346R346KaGaaAa11B.1.1.370.000193
S346R346KaGaaAa11B.1.1.4480.002033
S346R346KaGaaAa11B.1.1.5260.003546
S346R346KaGaaAa11B.1.160.70.002079
S346R346KaGaaAa11B.1.177.510.004566
S346R346KaGaaAa11B.1.177.520.001757
S346R346KaGaaAa11B.1.177.570.000281
S346R346KaGaaAa11B.1.214.20.0006
S346R346KaGaaAa11B.1.2360.002053
S346R346KaGaaAa11B.1.2370.004975
S346R346KaGaaAa11B.1.351.50.0006
S346R346KaGaaAa11B.1.3750.00082
S346R346KaGaaAa11B.1.3960.000706
S346R346KaGaaAa11B.1.3990.001934
S346R346KaGaaAa11B.1.4090.000781
S346R346KaGaaAa11B.1.4270.00005
S346R346KaGaaAa11B.1.4630.008065
S346R346KaGaaAa11B.1.5250.000113
S346R346KaGaaAa11B.1.5610.000397
S346R346KaGaaAa11B.1.5760.000907
S346R346KaGaaAa11B.1.5820.000491
S346R346KaGaaAa11B.1.617.10.000129
S346R346KaGaaAa11B.1.6270.00202
S346R346KaGaaAa11B.1.6360.006711
S346R346KaGaaAa11B.1.6380.052632
S346R346KaGaaAa11B.1.960.018868
S346R346KaGaaAa11B.40.002208
S346R346KaGaaAa11C.36.3.10.002717
S346R346KaGaaAa11C.37.10.002618
S346R346KaGaaAa11P.1.100.000269
S346R346KaGaaAa11P.20.000187
S346R346KaGaaAa11Q.40.000455
S346R346KaGaaAa11Q.60.006623