CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 677 | Q677H | nonsyn | caG | caT | 57213 | 30807 | 0.538462 | 23591-23593 | |
S | 677 | Q677H | nonsyn | caG | caC | 57213 | 26406 | 0.461538 | 23591-23593 |
Details of the mutation Q677H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 677 | Q677H | caG | caT | 30807 | 57213 | All | 0.005892 |
S | 677 | Q677H | caG | caC | 26406 | 57213 | All | 0.00505 |
S | 677 | Q677H | caG | caT | 10258 | 11076 | B.1.2 | 0.090326 |
S | 677 | Q677H | caG | caC | 818 | 11076 | B.1.2 | 0.007203 |
S | 677 | Q677H | caG | caC | 10131 | 10138 | AY.34 | 0.982352 |
S | 677 | Q677H | caG | caT | 7 | 10138 | AY.34 | 0.000679 |
S | 677 | Q677H | caG | caC | 8780 | 8785 | B.1.525 | 0.99355 |
S | 677 | Q677H | caG | caT | 5 | 8785 | B.1.525 | 0.000566 |
S | 677 | Q677H | caG | caT | 3425 | 4286 | B.1.1.7 | 0.003066 |
S | 677 | Q677H | caG | caC | 861 | 4286 | B.1.1.7 | 0.000771 |
S | 677 | Q677H | caG | caT | 1736 | 1736 | C.36.3 | 0.984685 |
S | 677 | Q677H | caG | caC | 560 | 1070 | B.1.617.2 | 0.002109 |
S | 677 | Q677H | caG | caT | 510 | 1070 | B.1.617.2 | 0.00192 |
S | 677 | Q677H | caG | caC | 1061 | 1061 | B.1.1.316 | 0.981499 |
S | 677 | Q677H | caG | caT | 1018 | 1019 | B.1.234 | 0.134319 |
S | 677 | Q677H | caG | caC | 1 | 1019 | B.1.234 | 0.000132 |
S | 677 | Q677H | caG | caT | 1011 | 1011 | B.1.1.70 | 0.344816 |
S | 677 | Q677H | caG | caT | 799 | 959 | B.1.36 | 0.116574 |
S | 677 | Q677H | caG | caC | 160 | 959 | B.1.36 | 0.023344 |
S | 677 | Q677H | caG | caT | 713 | 924 | B.1 | 0.006531 |
S | 677 | Q677H | caG | caC | 211 | 924 | B.1 | 0.001933 |
S | 677 | Q677H | caG | caC | 909 | 911 | AY.34.1 | 0.463539 |
S | 677 | Q677H | caG | caT | 2 | 911 | AY.34.1 | 0.00102 |
S | 677 | Q677H | caG | caT | 892 | 892 | C.36 | 0.812386 |
S | 677 | Q677H | caG | caT | 567 | 888 | AY.43 | 0.002512 |
S | 677 | Q677H | caG | caC | 321 | 888 | AY.43 | 0.001422 |
S | 677 | Q677H | caG | caT | 627 | 686 | AY.44 | 0.003816 |
S | 677 | Q677H | caG | caC | 59 | 686 | AY.44 | 0.000359 |
S | 677 | Q677H | caG | caT | 513 | 623 | AY.4 | 0.000798 |
S | 677 | Q677H | caG | caC | 110 | 623 | AY.4 | 0.000171 |
S | 677 | Q677H | caG | caT | 616 | 616 | B.1.1.486 | 0.971609 |
S | 677 | Q677H | caG | caT | 542 | 542 | B.1.1.284 | 0.058211 |
S | 677 | Q677H | caG | caT | 452 | 507 | AY.103 | 0.002806 |
S | 677 | Q677H | caG | caC | 55 | 507 | AY.103 | 0.000341 |
S | 677 | Q677H | caG | caT | 477 | 477 | B.1.1.420 | 0.479879 |
S | 677 | Q677H | caG | caT | 279 | 401 | P.1 | 0.004395 |
S | 677 | Q677H | caG | caC | 122 | 401 | P.1 | 0.001922 |
S | 677 | Q677H | caG | caC | 332 | 394 | AY.102 | 0.008803 |
S | 677 | Q677H | caG | caT | 62 | 394 | AY.102 | 0.001644 |
S | 677 | Q677H | caG | caT | 264 | 333 | B.1.1 | 0.004789 |
S | 677 | Q677H | caG | caC | 69 | 333 | B.1.1 | 0.001252 |
S | 677 | Q677H | caG | caT | 327 | 327 | C.36.3.1 | 0.888587 |
S | 677 | Q677H | caG | caT | 313 | 325 | AY.3 | 0.003113 |
S | 677 | Q677H | caG | caC | 12 | 325 | AY.3 | 0.000119 |
S | 677 | Q677H | caG | caT | 317 | 320 | B.1.526 | 0.007451 |
S | 677 | Q677H | caG | caC | 3 | 320 | B.1.526 | 0.000071 |
S | 677 | Q677H | caG | caT | 305 | 305 | P.6 | 0.959119 |
S | 677 | Q677H | caG | caC | 164 | 251 | B.1.351 | 0.004875 |
S | 677 | Q677H | caG | caT | 87 | 251 | B.1.351 | 0.002586 |
S | 677 | Q677H | caG | caT | 241 | 241 | C.36.1 | 1 |
S | 677 | Q677H | caG | caT | 201 | 236 | B.1.177 | 0.002647 |
S | 677 | Q677H | caG | caC | 35 | 236 | B.1.177 | 0.000461 |
S | 677 | Q677H | caG | caT | 212 | 212 | B.1.241 | 0.172078 |
S | 677 | Q677H | caG | caC | 184 | 205 | AY.9.1 | 0.015405 |
S | 677 | Q677H | caG | caT | 21 | 205 | AY.9.1 | 0.001758 |
S | 677 | Q677H | caG | caT | 171 | 181 | B.1.160 | 0.005333 |
S | 677 | Q677H | caG | caC | 10 | 181 | B.1.160 | 0.000312 |
S | 677 | Q677H | caG | caC | 116 | 171 | B.1.427 | 0.005858 |
S | 677 | Q677H | caG | caT | 55 | 171 | B.1.427 | 0.002777 |
S | 677 | Q677H | caG | caT | 142 | 150 | AY.98.1 | 0.006877 |
S | 677 | Q677H | caG | caC | 8 | 150 | AY.98.1 | 0.000387 |
S | 677 | Q677H | caG | caT | 134 | 136 | AY.25 | 0.000806 |
S | 677 | Q677H | caG | caC | 2 | 136 | AY.25 | 0.000012 |
S | 677 | Q677H | caG | caT | 126 | 136 | B.1.596 | 0.010979 |
S | 677 | Q677H | caG | caC | 10 | 136 | B.1.596 | 0.000871 |
S | 677 | Q677H | caG | caT | 133 | 133 | A.27 | 0.220199 |
S | 677 | Q677H | caG | caC | 111 | 133 | AY.39 | 0.002743 |
S | 677 | Q677H | caG | caT | 22 | 133 | AY.39 | 0.000544 |
S | 677 | Q677H | caG | caT | 124 | 125 | B.1.265 | 0.15756 |
S | 677 | Q677H | caG | caC | 1 | 125 | B.1.265 | 0.001271 |
S | 677 | Q677H | caG | caT | 109 | 118 | B.1.470 | 0.15309 |
S | 677 | Q677H | caG | caC | 9 | 118 | B.1.470 | 0.01264 |
S | 677 | Q677H | caG | caT | 107 | 107 | B.1.1.50 | 0.072641 |
S | 677 | Q677H | caG | caT | 78 | 106 | C.37 | 0.009053 |
S | 677 | Q677H | caG | caC | 28 | 106 | C.37 | 0.00325 |
S | 677 | Q677H | caG | caT | 98 | 99 | AY.61 | 0.010268 |
S | 677 | Q677H | caG | caC | 1 | 99 | AY.61 | 0.000105 |
S | 677 | Q677H | caG | caT | 61 | 95 | B.1.429 | 0.001435 |
S | 677 | Q677H | caG | caC | 34 | 95 | B.1.429 | 0.0008 |
S | 677 | Q677H | caG | caT | 79 | 93 | B.1.1.222 | 0.016116 |
S | 677 | Q677H | caG | caC | 14 | 93 | B.1.1.222 | 0.002856 |
S | 677 | Q677H | caG | caT | 85 | 93 | B.1.1.306 | 0.037264 |
S | 677 | Q677H | caG | caC | 8 | 93 | B.1.1.306 | 0.003507 |
S | 677 | Q677H | caG | caT | 84 | 86 | B.1.258 | 0.00559 |
S | 677 | Q677H | caG | caC | 2 | 86 | B.1.258 | 0.000133 |
S | 677 | Q677H | caG | caT | 84 | 84 | AA.1 | 0.608696 |
S | 677 | Q677H | caG | caC | 49 | 83 | AY.33 | 0.003272 |
S | 677 | Q677H | caG | caT | 34 | 83 | AY.33 | 0.00227 |
S | 677 | Q677H | caG | caT | 57 | 73 | B.1.1.519 | 0.002264 |
S | 677 | Q677H | caG | caC | 16 | 73 | B.1.1.519 | 0.000635 |
S | 677 | Q677H | caG | caT | 72 | 72 | B.1.36.18 | 0.030252 |
S | 677 | Q677H | caG | caC | 69 | 69 | R.2 | 1 |
S | 677 | Q677H | caG | caC | 59 | 66 | AY.106 | 0.019759 |
S | 677 | Q677H | caG | caT | 7 | 66 | AY.106 | 0.002344 |
S | 677 | Q677H | caG | caT | 38 | 66 | B.1.243 | 0.002644 |
S | 677 | Q677H | caG | caC | 28 | 66 | B.1.243 | 0.001948 |
S | 677 | Q677H | caG | caT | 61 | 65 | AY.4.2 | 0.001323 |
S | 677 | Q677H | caG | caC | 4 | 65 | AY.4.2 | 0.000087 |
S | 677 | Q677H | caG | caC | 42 | 64 | P.1.14 | 0.002008 |
S | 677 | Q677H | caG | caT | 22 | 64 | P.1.14 | 0.001052 |
S | 677 | Q677H | caG | caC | 42 | 61 | AY.46 | 0.004371 |
S | 677 | Q677H | caG | caT | 19 | 61 | AY.46 | 0.001978 |
S | 677 | Q677H | caG | caC | 58 | 58 | B.1.429.1 | 0.698795 |
S | 677 | Q677H | caG | caC | 36 | 55 | B.1.1.214 | 0.001996 |
S | 677 | Q677H | caG | caT | 19 | 55 | B.1.1.214 | 0.001054 |
S | 677 | Q677H | caG | caT | 37 | 43 | AY.75 | 0.002073 |
S | 677 | Q677H | caG | caC | 6 | 43 | AY.75 | 0.000336 |
S | 677 | Q677H | caG | caT | 42 | 43 | B.1.189 | 0.180258 |
S | 677 | Q677H | caG | caC | 1 | 43 | B.1.189 | 0.004292 |
S | 677 | Q677H | caG | caC | 26 | 42 | B.1.36.29 | 0.013451 |
S | 677 | Q677H | caG | caT | 16 | 42 | B.1.36.29 | 0.008277 |
S | 677 | Q677H | caG | caC | 24 | 36 | AY.119 | 0.000847 |
S | 677 | Q677H | caG | caT | 12 | 36 | AY.119 | 0.000424 |
S | 677 | Q677H | caG | caC | 19 | 36 | AY.6 | 0.000781 |
S | 677 | Q677H | caG | caT | 17 | 36 | AY.6 | 0.000699 |
S | 677 | Q677H | caG | caT | 25 | 36 | AY.9.2 | 0.000918 |
S | 677 | Q677H | caG | caC | 11 | 36 | AY.9.2 | 0.000404 |
S | 677 | Q677H | caG | caT | 21 | 35 | AY.23 | 0.001465 |
S | 677 | Q677H | caG | caC | 14 | 35 | AY.23 | 0.000976 |
S | 677 | Q677H | caG | caT | 34 | 35 | B.1.1.28 | 0.010582 |
S | 677 | Q677H | caG | caC | 1 | 35 | B.1.1.28 | 0.000311 |
S | 677 | Q677H | caG | caT | 28 | 35 | B.1.36.8 | 0.028 |
S | 677 | Q677H | caG | caC | 7 | 35 | B.1.36.8 | 0.007 |
S | 677 | Q677H | caG | caT | 31 | 34 | AY.26 | 0.000878 |
S | 677 | Q677H | caG | caC | 3 | 34 | AY.26 | 0.000085 |
S | 677 | Q677H | caG | caT | 33 | 34 | B.1.1.63 | 0.012731 |
S | 677 | Q677H | caG | caC | 1 | 34 | B.1.1.63 | 0.000386 |
S | 677 | Q677H | caG | caT | 23 | 33 | AY.99.2 | 0.00212 |
S | 677 | Q677H | caG | caC | 10 | 33 | AY.99.2 | 0.000922 |
S | 677 | Q677H | caG | caT | 27 | 32 | AY.113 | 0.003845 |
S | 677 | Q677H | caG | caC | 5 | 32 | AY.113 | 0.000712 |
S | 677 | Q677H | caG | caT | 25 | 32 | B | 0.003195 |
S | 677 | Q677H | caG | caC | 7 | 32 | B | 0.000895 |
S | 677 | Q677H | caG | caT | 26 | 31 | AY.42 | 0.001046 |
S | 677 | Q677H | caG | caC | 5 | 31 | AY.42 | 0.000201 |
S | 677 | Q677H | caG | caT | 26 | 29 | AY.29 | 0.00041 |
S | 677 | Q677H | caG | caC | 3 | 29 | AY.29 | 0.000047 |
S | 677 | Q677H | caG | caT | 29 | 29 | B.1.618 | 0.116935 |
S | 677 | Q677H | caG | caT | 29 | 29 | C.36.2 | 1 |
S | 677 | Q677H | caG | caC | 22 | 28 | AY.117 | 0.001859 |
S | 677 | Q677H | caG | caT | 6 | 28 | AY.117 | 0.000507 |
S | 677 | Q677H | caG | caC | 28 | 28 | AY.46.1 | 0.028747 |
S | 677 | Q677H | caG | caT | 27 | 27 | AY.39.1 | 0.00107 |
S | 677 | Q677H | caG | caC | 17 | 27 | B.1.1.216 | 0.015138 |
S | 677 | Q677H | caG | caT | 10 | 27 | B.1.1.216 | 0.008905 |
S | 677 | Q677H | caG | caT | 27 | 27 | Q.7 | 0.03 |
S | 677 | Q677H | caG | caC | 21 | 26 | AY.36 | 0.003112 |
S | 677 | Q677H | caG | caT | 5 | 26 | AY.36 | 0.000741 |
S | 677 | Q677H | caG | caC | 24 | 26 | B.1.36.31 | 0.042032 |
S | 677 | Q677H | caG | caT | 2 | 26 | B.1.36.31 | 0.003503 |
S | 677 | Q677H | caG | caT | 23 | 26 | R.1 | 0.00207 |
S | 677 | Q677H | caG | caC | 3 | 26 | R.1 | 0.00027 |
S | 677 | Q677H | caG | caT | 22 | 25 | B.1.637 | 0.001608 |
S | 677 | Q677H | caG | caC | 3 | 25 | B.1.637 | 0.000219 |
S | 677 | Q677H | caG | caC | 18 | 24 | B.1.236 | 0.036961 |
S | 677 | Q677H | caG | caT | 6 | 24 | B.1.236 | 0.01232 |
S | 677 | Q677H | caG | caT | 23 | 24 | B.1.36.22 | 0.027778 |
S | 677 | Q677H | caG | caC | 1 | 24 | B.1.36.22 | 0.001208 |
S | 677 | Q677H | caG | caC | 24 | 24 | B.1.378 | 0.164384 |
S | 677 | Q677H | caG | caT | 14 | 22 | B.1.621 | 0.001239 |
S | 677 | Q677H | caG | caC | 8 | 22 | B.1.621 | 0.000708 |
S | 677 | Q677H | caG | caT | 16 | 22 | P.2 | 0.002986 |
S | 677 | Q677H | caG | caC | 6 | 22 | P.2 | 0.00112 |
S | 677 | Q677H | caG | caT | 20 | 21 | B.1.221 | 0.001421 |
S | 677 | Q677H | caG | caC | 1 | 21 | B.1.221 | 0.000071 |
S | 677 | Q677H | caG | caT | 21 | 21 | B.1.232 | 0.011284 |
S | 677 | Q677H | caG | caT | 16 | 21 | P.1.15 | 0.003717 |
S | 677 | Q677H | caG | caC | 5 | 21 | P.1.15 | 0.001162 |
S | 677 | Q677H | caG | caT | 19 | 20 | AY.20 | 0.000738 |
S | 677 | Q677H | caG | caC | 1 | 20 | AY.20 | 0.000039 |
S | 677 | Q677H | caG | caT | 18 | 20 | B.1.456 | 0.058824 |
S | 677 | Q677H | caG | caC | 2 | 20 | B.1.456 | 0.006536 |
S | 677 | Q677H | caG | caT | 11 | 18 | AY.5 | 0.000227 |
S | 677 | Q677H | caG | caC | 7 | 18 | AY.5 | 0.000145 |
S | 677 | Q677H | caG | caT | 17 | 18 | B.1.1.33 | 0.007155 |
S | 677 | Q677H | caG | caC | 1 | 18 | B.1.1.33 | 0.000421 |
S | 677 | Q677H | caG | caT | 18 | 18 | P.1.17 | 0.002912 |
S | 677 | Q677H | caG | caC | 9 | 17 | AY.120 | 0.000335 |
S | 677 | Q677H | caG | caT | 8 | 17 | AY.120 | 0.000297 |
S | 677 | Q677H | caG | caT | 11 | 17 | AY.45 | 0.001339 |
S | 677 | Q677H | caG | caC | 6 | 17 | AY.45 | 0.00073 |
S | 677 | Q677H | caG | caT | 17 | 17 | B.1.1.25 | 0.009665 |
S | 677 | Q677H | caG | caC | 17 | 17 | B.1.1.318 | 0.00513 |
S | 677 | Q677H | caG | caT | 17 | 17 | B.1.582 | 0.008342 |
S | 677 | Q677H | caG | caT | 15 | 17 | B.1.617.1 | 0.001934 |
S | 677 | Q677H | caG | caC | 2 | 17 | B.1.617.1 | 0.000258 |
S | 677 | Q677H | caG | caT | 17 | 17 | P.3 | 0.027113 |
S | 677 | Q677H | caG | caT | 16 | 16 | B.1.1.1 | 0.005227 |
S | 677 | Q677H | caG | caC | 14 | 16 | B.1.111 | 0.016451 |
S | 677 | Q677H | caG | caT | 2 | 16 | B.1.111 | 0.00235 |
S | 677 | Q677H | caG | caT | 15 | 15 | B.1.596.1 | 0.140187 |
S | 677 | Q677H | caG | caT | 15 | 15 | C.17 | 0.833333 |
S | 677 | Q677H | caG | caT | 13 | 14 | A.1 | 0.003664 |
S | 677 | Q677H | caG | caC | 1 | 14 | A.1 | 0.000282 |
S | 677 | Q677H | caG | caT | 13 | 14 | AY.58 | 0.011797 |
S | 677 | Q677H | caG | caC | 1 | 14 | AY.58 | 0.000907 |
S | 677 | Q677H | caG | caT | 11 | 14 | B.1.1.294 | 0.013924 |
S | 677 | Q677H | caG | caC | 3 | 14 | B.1.1.294 | 0.003797 |
S | 677 | Q677H | caG | caC | 13 | 14 | B.1.1.512 | 0.371429 |
S | 677 | Q677H | caG | caT | 1 | 14 | B.1.1.512 | 0.028571 |
S | 677 | Q677H | caG | caT | 13 | 13 | AY.4.5 | 0.001397 |
S | 677 | Q677H | caG | caT | 13 | 13 | AY.9 | 0.000879 |
S | 677 | Q677H | caG | caT | 12 | 13 | B.1.214.1 | 0.24 |
S | 677 | Q677H | caG | caC | 1 | 13 | B.1.214.1 | 0.02 |
S | 677 | Q677H | caG | caT | 13 | 13 | B.1.425 | 0.038922 |
S | 677 | Q677H | caG | caT | 13 | 13 | L.3 | 0.046099 |
S | 677 | Q677H | caG | caT | 12 | 12 | AY.100 | 0.000552 |
S | 677 | Q677H | caG | caT | 12 | 12 | AY.54 | 0.001144 |
S | 677 | Q677H | caG | caT | 8 | 12 | AY.75.1 | 0.001442 |
S | 677 | Q677H | caG | caC | 4 | 12 | AY.75.1 | 0.000721 |
S | 677 | Q677H | caG | caC | 9 | 12 | B.1.1.277 | 0.006829 |
S | 677 | Q677H | caG | caT | 3 | 12 | B.1.1.277 | 0.002276 |
S | 677 | Q677H | caG | caT | 12 | 12 | B.1.258.14 | 0.011765 |
S | 677 | Q677H | caG | caT | 12 | 12 | B.1.351.5 | 0.007194 |
S | 677 | Q677H | caG | caT | 12 | 12 | B.1.36.10 | 0.057416 |
S | 677 | Q677H | caG | caT | 9 | 11 | AY.47 | 0.00028 |
S | 677 | Q677H | caG | caC | 2 | 11 | AY.47 | 0.000062 |
S | 677 | Q677H | caG | caC | 8 | 11 | AY.84 | 0.0035 |
S | 677 | Q677H | caG | caT | 3 | 11 | AY.84 | 0.001312 |
S | 677 | Q677H | caG | caT | 11 | 11 | B.1.1.10 | 0.012263 |
S | 677 | Q677H | caG | caT | 11 | 11 | B.1.1.271 | 0.611111 |
S | 677 | Q677H | caG | caT | 11 | 11 | B.1.177.33 | 0.018092 |
S | 677 | Q677H | caG | caT | 7 | 11 | B.1.177.35 | 0.004838 |
S | 677 | Q677H | caG | caC | 4 | 11 | B.1.177.35 | 0.002764 |
S | 677 | Q677H | caG | caT | 10 | 11 | B.1.177.73 | 0.005663 |
S | 677 | Q677H | caG | caC | 1 | 11 | B.1.177.73 | 0.000566 |
S | 677 | Q677H | caG | caT | 7 | 10 | AY.121 | 0.000947 |
S | 677 | Q677H | caG | caC | 3 | 10 | AY.121 | 0.000406 |
S | 677 | Q677H | caG | caC | 10 | 10 | B.1.1.239 | 0.322581 |
S | 677 | Q677H | caG | caT | 10 | 10 | B.1.36.16 | 0.014245 |
S | 677 | Q677H | caG | caT | 8 | 10 | B.1.577 | 0.005498 |
S | 677 | Q677H | caG | caC | 2 | 10 | B.1.577 | 0.001375 |
S | 677 | Q677H | caG | caT | 7 | 10 | B.1.609 | 0.003356 |
S | 677 | Q677H | caG | caC | 3 | 10 | B.1.609 | 0.001438 |
S | 677 | Q677H | caG | caT | 9 | 9 | AY.27 | 0.000582 |
S | 677 | Q677H | caG | caT | 7 | 9 | AY.55 | 0.006422 |
S | 677 | Q677H | caG | caC | 2 | 9 | AY.55 | 0.001835 |
S | 677 | Q677H | caG | caT | 6 | 9 | AY.99 | 0.006296 |
S | 677 | Q677H | caG | caC | 3 | 9 | AY.99 | 0.003148 |
S | 677 | Q677H | caG | caT | 9 | 9 | B.1.1.372 | 0.006198 |
S | 677 | Q677H | caG | caT | 8 | 9 | B.1.170 | 0.034483 |
S | 677 | Q677H | caG | caC | 1 | 9 | B.1.170 | 0.00431 |
S | 677 | Q677H | caG | caC | 7 | 9 | B.1.177.21 | 0.000535 |
S | 677 | Q677H | caG | caT | 2 | 9 | B.1.177.21 | 0.000153 |
S | 677 | Q677H | caG | caC | 8 | 9 | B.1.351.2 | 0.002421 |
S | 677 | Q677H | caG | caT | 1 | 9 | B.1.351.2 | 0.000303 |
S | 677 | Q677H | caG | caC | 9 | 9 | B.1.564 | 0.003833 |
S | 677 | Q677H | caG | caT | 9 | 9 | Q.1 | 0.001137 |
S | 677 | Q677H | caG | caT | 8 | 8 | AY.101 | 0.003923 |
S | 677 | Q677H | caG | caC | 7 | 8 | AY.116 | 0.002007 |
S | 677 | Q677H | caG | caT | 1 | 8 | AY.116 | 0.000287 |
S | 677 | Q677H | caG | caT | 8 | 8 | AY.118 | 0.000501 |
S | 677 | Q677H | caG | caT | 8 | 8 | AY.16.1 | 0.003759 |
S | 677 | Q677H | caG | caC | 8 | 8 | AY.46.2 | 0.005083 |
S | 677 | Q677H | caG | caC | 6 | 8 | AY.5.3 | 0.002024 |
S | 677 | Q677H | caG | caT | 2 | 8 | AY.5.3 | 0.000675 |
S | 677 | Q677H | caG | caC | 5 | 8 | AY.5.4 | 0.001384 |
S | 677 | Q677H | caG | caT | 3 | 8 | AY.5.4 | 0.00083 |
S | 677 | Q677H | caG | caT | 4 | 8 | AY.68 | 0.001095 |
S | 677 | Q677H | caG | caC | 4 | 8 | AY.68 | 0.001095 |
S | 677 | Q677H | caG | caT | 8 | 8 | AY.74 | 0.000925 |
S | 677 | Q677H | caG | caT | 6 | 8 | AY.98 | 0.000474 |
S | 677 | Q677H | caG | caC | 2 | 8 | AY.98 | 0.000158 |
S | 677 | Q677H | caG | caT | 8 | 8 | B.1.1.135 | 0.037559 |
S | 677 | Q677H | caG | caC | 8 | 8 | B.1.1.261 | 0.068966 |
S | 677 | Q677H | caG | caT | 8 | 8 | B.1.160.32 | 0.034335 |
S | 677 | Q677H | caG | caC | 7 | 8 | B.1.400 | 0.003003 |
S | 677 | Q677H | caG | caT | 1 | 8 | B.1.400 | 0.000429 |
S | 677 | Q677H | caG | caT | 8 | 8 | B.1.401 | 0.065574 |
S | 677 | Q677H | caG | caT | 4 | 8 | B.1.416 | 0.005076 |
S | 677 | Q677H | caG | caC | 4 | 8 | B.1.416 | 0.005076 |
S | 677 | Q677H | caG | caC | 7 | 8 | B.1.438.1 | 0.000751 |
S | 677 | Q677H | caG | caT | 1 | 8 | B.1.438.1 | 0.000107 |
S | 677 | Q677H | caG | caT | 7 | 8 | B.1.466.2 | 0.002739 |
S | 677 | Q677H | caG | caC | 1 | 8 | B.1.466.2 | 0.000391 |
S | 677 | Q677H | caG | caT | 8 | 8 | B.1.588 | 0.007279 |
S | 677 | Q677H | caG | caT | 5 | 8 | C.16 | 0.005302 |
S | 677 | Q677H | caG | caC | 3 | 8 | C.16 | 0.003181 |
S | 677 | Q677H | caG | caT | 6 | 7 | A | 0.002322 |
S | 677 | Q677H | caG | caC | 1 | 7 | A | 0.000387 |
S | 677 | Q677H | caG | caT | 7 | 7 | AD.2 | 0.001533 |
S | 677 | Q677H | caG | caT | 6 | 7 | AY.120.1 | 0.001926 |
S | 677 | Q677H | caG | caC | 1 | 7 | AY.120.1 | 0.000321 |
S | 677 | Q677H | caG | caC | 5 | 7 | AY.92 | 0.001436 |
S | 677 | Q677H | caG | caT | 2 | 7 | AY.92 | 0.000575 |
S | 677 | Q677H | caG | caT | 4 | 7 | B.1.1.326 | 0.007042 |
S | 677 | Q677H | caG | caC | 3 | 7 | B.1.1.326 | 0.005282 |
S | 677 | Q677H | caG | caT | 7 | 7 | B.1.126 | 0.008929 |
S | 677 | Q677H | caG | caT | 7 | 7 | B.1.177.53 | 0.016746 |
S | 677 | Q677H | caG | caT | 7 | 7 | B.1.177.75 | 0.007284 |
S | 677 | Q677H | caG | caT | 7 | 7 | B.1.240 | 0.001509 |
S | 677 | Q677H | caG | caT | 6 | 7 | B.1.346 | 0.007864 |
S | 677 | Q677H | caG | caC | 1 | 7 | B.1.346 | 0.001311 |
S | 677 | Q677H | caG | caT | 7 | 7 | B.1.350.1 | 1 |
S | 677 | Q677H | caG | caT | 7 | 7 | B.1.351.3 | 0.006135 |
S | 677 | Q677H | caG | caT | 6 | 7 | B.1.369 | 0.001711 |
S | 677 | Q677H | caG | caC | 1 | 7 | B.1.369 | 0.000285 |
S | 677 | Q677H | caG | caT | 7 | 7 | B.1.620 | 0.006623 |
S | 677 | Q677H | caG | caT | 7 | 7 | B.1.93 | 0.006536 |
S | 677 | Q677H | caG | caC | 5 | 6 | AY.62 | 0.002179 |
S | 677 | Q677H | caG | caT | 1 | 6 | AY.62 | 0.000436 |
S | 677 | Q677H | caG | caT | 6 | 6 | B.1.1.282 | 0.069767 |
S | 677 | Q677H | caG | caT | 4 | 6 | B.1.1.416 | 0.00362 |
S | 677 | Q677H | caG | caC | 2 | 6 | B.1.1.416 | 0.00181 |
S | 677 | Q677H | caG | caT | 6 | 6 | B.1.177.7 | 0.000989 |
S | 677 | Q677H | caG | caT | 5 | 6 | B.1.311 | 0.001373 |
S | 677 | Q677H | caG | caC | 1 | 6 | B.1.311 | 0.000275 |
S | 677 | Q677H | caG | caC | 5 | 6 | B.1.396 | 0.003529 |
S | 677 | Q677H | caG | caT | 1 | 6 | B.1.396 | 0.000706 |
S | 677 | Q677H | caG | caT | 4 | 6 | B.1.576 | 0.003626 |
S | 677 | Q677H | caG | caC | 2 | 6 | B.1.576 | 0.001813 |
S | 677 | Q677H | caG | caT | 6 | 6 | B.1.595 | 0.001566 |
S | 677 | Q677H | caG | caT | 6 | 6 | C.39 | 0.113208 |
S | 677 | Q677H | caG | caT | 5 | 5 | A.2.5 | 0.002495 |
S | 677 | Q677H | caG | caT | 3 | 5 | AY.16 | 0.001139 |
S | 677 | Q677H | caG | caC | 2 | 5 | AY.16 | 0.000759 |
S | 677 | Q677H | caG | caT | 5 | 5 | AY.67 | 0.002321 |
S | 677 | Q677H | caG | caT | 5 | 5 | AY.69 | 0.000933 |
S | 677 | Q677H | caG | caC | 5 | 5 | AY.81 | 0.00996 |
S | 677 | Q677H | caG | caT | 5 | 5 | B.1.1.159 | 0.023364 |
S | 677 | Q677H | caG | caT | 5 | 5 | B.1.1.263 | 0.007788 |
S | 677 | Q677H | caG | caT | 4 | 5 | B.1.1.37 | 0.000771 |
S | 677 | Q677H | caG | caC | 1 | 5 | B.1.1.37 | 0.000193 |
S | 677 | Q677H | caG | caT | 5 | 5 | B.1.1.434 | 0.001743 |
S | 677 | Q677H | caG | caT | 5 | 5 | B.1.1.521 | 0.026738 |
S | 677 | Q677H | caG | caT | 5 | 5 | B.1.177.23 | 0.016181 |
S | 677 | Q677H | caG | caT | 5 | 5 | B.1.177.44 | 0.002595 |
S | 677 | Q677H | caG | caT | 5 | 5 | B.1.177.86 | 0.000917 |
S | 677 | Q677H | caG | caT | 4 | 5 | B.1.258.3 | 0.0067 |
S | 677 | Q677H | caG | caC | 1 | 5 | B.1.258.3 | 0.001675 |
S | 677 | Q677H | caG | caT | 4 | 5 | B.1.367 | 0.00317 |
S | 677 | Q677H | caG | caC | 1 | 5 | B.1.367 | 0.000792 |
S | 677 | Q677H | caG | caC | 4 | 5 | B.1.437 | 0.083333 |
S | 677 | Q677H | caG | caT | 1 | 5 | B.1.437 | 0.020833 |
S | 677 | Q677H | caG | caT | 5 | 5 | B.1.459 | 0.020408 |
S | 677 | Q677H | caG | caT | 5 | 5 | B.1.468 | 0.028571 |
S | 677 | Q677H | caG | caT | 4 | 5 | B.1.560 | 0.018519 |
S | 677 | Q677H | caG | caC | 1 | 5 | B.1.560 | 0.00463 |
S | 677 | Q677H | caG | caT | 5 | 5 | B.1.580 | 0.020325 |
S | 677 | Q677H | caG | caT | 4 | 5 | B.1.587 | 0.00759 |
S | 677 | Q677H | caG | caC | 1 | 5 | B.1.587 | 0.001898 |
S | 677 | Q677H | caG | caT | 5 | 5 | B.6 | 0.00455 |
S | 677 | Q677H | caG | caT | 5 | 5 | D.2 | 0.000375 |
S | 677 | Q677H | caG | caT | 5 | 5 | N.5 | 0.008834 |
S | 677 | Q677H | caG | caT | 5 | 5 | P.1.7 | 0.001596 |
S | 677 | Q677H | caG | caC | 3 | 4 | AY.104 | 0.005952 |
S | 677 | Q677H | caG | caT | 1 | 4 | AY.104 | 0.001984 |
S | 677 | Q677H | caG | caT | 3 | 4 | AY.12 | 0.000948 |
S | 677 | Q677H | caG | caC | 1 | 4 | AY.12 | 0.000316 |
S | 677 | Q677H | caG | caT | 3 | 4 | AY.14 | 0.000264 |
S | 677 | Q677H | caG | caC | 1 | 4 | AY.14 | 0.000088 |
S | 677 | Q677H | caG | caC | 4 | 4 | AY.22 | 0.008368 |
S | 677 | Q677H | caG | caT | 4 | 4 | AY.3.1 | 0.000341 |
S | 677 | Q677H | caG | caT | 4 | 4 | AY.35 | 0.000932 |
S | 677 | Q677H | caG | caT | 3 | 4 | AY.46.6 | 0.000217 |
S | 677 | Q677H | caG | caC | 1 | 4 | AY.46.6 | 0.000072 |
S | 677 | Q677H | caG | caT | 4 | 4 | AY.71 | 0.0019 |
S | 677 | Q677H | caG | caT | 4 | 4 | B.1.1.192 | 0.009238 |
S | 677 | Q677H | caG | caT | 4 | 4 | B.1.1.255 | 0.012121 |
S | 677 | Q677H | caG | caC | 2 | 4 | B.1.1.305 | 0.007722 |
S | 677 | Q677H | caG | caT | 2 | 4 | B.1.1.305 | 0.007722 |
S | 677 | Q677H | caG | caT | 4 | 4 | B.1.1.315 | 0.033898 |
S | 677 | Q677H | caG | caT | 4 | 4 | B.1.1.317 | 0.001647 |
S | 677 | Q677H | caG | caT | 4 | 4 | B.1.1.325 | 0.102564 |
S | 677 | Q677H | caG | caT | 3 | 4 | B.1.1.340 | 0.136364 |
S | 677 | Q677H | caG | caC | 1 | 4 | B.1.1.340 | 0.045455 |
S | 677 | Q677H | caG | caT | 4 | 4 | B.1.1.348 | 0.003185 |
S | 677 | Q677H | caG | caT | 4 | 4 | B.1.1.354 | 0.017544 |
S | 677 | Q677H | caG | caT | 3 | 4 | B.1.1.39 | 0.001529 |
S | 677 | Q677H | caG | caC | 1 | 4 | B.1.1.39 | 0.00051 |
S | 677 | Q677H | caG | caT | 4 | 4 | B.1.1.41 | 0.025316 |
S | 677 | Q677H | caG | caT | 4 | 4 | B.1.1.57 | 0.045977 |
S | 677 | Q677H | caG | caT | 4 | 4 | B.1.177.81 | 0.000757 |
S | 677 | Q677H | caG | caT | 3 | 4 | B.1.258.17 | 0.000312 |
S | 677 | Q677H | caG | caC | 1 | 4 | B.1.258.17 | 0.000104 |
S | 677 | Q677H | caG | caT | 4 | 4 | B.1.36.35 | 0.010417 |
S | 677 | Q677H | caG | caT | 4 | 4 | B.1.538 | 0.032258 |
S | 677 | Q677H | caG | caT | 4 | 4 | B.1.561 | 0.001588 |
S | 677 | Q677H | caG | caT | 3 | 4 | B.1.625 | 0.007059 |
S | 677 | Q677H | caG | caC | 1 | 4 | B.1.625 | 0.002353 |
S | 677 | Q677H | caG | caT | 2 | 4 | B.40 | 0.000729 |
S | 677 | Q677H | caG | caC | 2 | 4 | B.40 | 0.000729 |
S | 677 | Q677H | caG | caT | 3 | 4 | C.23 | 0.017442 |
S | 677 | Q677H | caG | caC | 1 | 4 | C.23 | 0.005814 |
S | 677 | Q677H | caG | caC | 4 | 4 | P.1.1 | 0.001271 |
S | 677 | Q677H | caG | caT | 4 | 4 | P.1.2 | 0.004624 |
S | 677 | Q677H | caG | caC | 4 | 4 | Q.8 | 0.00066 |
S | 677 | Q677H | caG | caT | 3 | 3 | AY.108 | 0.003308 |
S | 677 | Q677H | caG | caC | 3 | 3 | AY.21 | 0.005693 |
S | 677 | Q677H | caG | caT | 2 | 3 | AY.32 | 0.001065 |
S | 677 | Q677H | caG | caC | 1 | 3 | AY.32 | 0.000532 |
S | 677 | Q677H | caG | caT | 2 | 3 | AY.53 | 0.000575 |
S | 677 | Q677H | caG | caC | 1 | 3 | AY.53 | 0.000288 |
S | 677 | Q677H | caG | caT | 3 | 3 | AY.7.1 | 0.000338 |
S | 677 | Q677H | caG | caT | 3 | 3 | AY.8 | 0.001818 |
S | 677 | Q677H | caG | caT | 2 | 3 | AY.91 | 0.001461 |
S | 677 | Q677H | caG | caC | 1 | 3 | AY.91 | 0.00073 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.1.133 | 0.025424 |
S | 677 | Q677H | caG | caT | 2 | 3 | B.1.1.170 | 0.002494 |
S | 677 | Q677H | caG | caC | 1 | 3 | B.1.1.170 | 0.001247 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.1.243 | 0.012245 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.1.253 | 0.007519 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.1.312 | 0.005736 |
S | 677 | Q677H | caG | caC | 3 | 3 | B.1.1.51 | 0.005155 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.131 | 0.026316 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.177.12 | 0.000455 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.177.60 | 0.000655 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.210 | 0.006397 |
S | 677 | Q677H | caG | caC | 3 | 3 | B.1.221.4 | 0.0125 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.237 | 0.014925 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.258.4 | 0.010345 |
S | 677 | Q677H | caG | caC | 2 | 3 | B.1.336 | 0.004878 |
S | 677 | Q677H | caG | caT | 1 | 3 | B.1.336 | 0.002439 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.36.17 | 0.001482 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.36.24 | 0.018519 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.480 | 0.007463 |
S | 677 | Q677H | caG | caT | 2 | 3 | B.1.499 | 0.002101 |
S | 677 | Q677H | caG | caC | 1 | 3 | B.1.499 | 0.00105 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.540 | 0.029126 |
S | 677 | Q677H | caG | caC | 3 | 3 | B.1.605 | 0.017857 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.1.628 | 0.001057 |
S | 677 | Q677H | caG | caT | 3 | 3 | B.3 | 0.002492 |
S | 677 | Q677H | caG | caT | 3 | 3 | C.14 | 0.012987 |
S | 677 | Q677H | caG | caT | 3 | 3 | N.6 | 0.021277 |
S | 677 | Q677H | caG | caT | 2 | 3 | P.1.12 | 0.000968 |
S | 677 | Q677H | caG | caC | 1 | 3 | P.1.12 | 0.000484 |
S | 677 | Q677H | caG | caT | 2 | 3 | Q.3 | 0.00029 |
S | 677 | Q677H | caG | caC | 1 | 3 | Q.3 | 0.000145 |
S | 677 | Q677H | caG | caT | 2 | 2 | A.2 | 0.001324 |
S | 677 | Q677H | caG | caT | 2 | 2 | A.2.2 | 0.003378 |
S | 677 | Q677H | caG | caT | 1 | 2 | A.25 | 0.018182 |
S | 677 | Q677H | caG | caC | 1 | 2 | A.25 | 0.018182 |
S | 677 | Q677H | caG | caC | 2 | 2 | A.28 | 0.005291 |
S | 677 | Q677H | caG | caC | 2 | 2 | AU.1 | 0.002532 |
S | 677 | Q677H | caG | caT | 2 | 2 | AY.1 | 0.000791 |
S | 677 | Q677H | caG | caT | 1 | 2 | AY.110 | 0.000113 |
S | 677 | Q677H | caG | caC | 1 | 2 | AY.110 | 0.000113 |
S | 677 | Q677H | caG | caT | 2 | 2 | AY.13 | 0.000322 |
S | 677 | Q677H | caG | caT | 2 | 2 | AY.15 | 0.004444 |
S | 677 | Q677H | caG | caT | 2 | 2 | AY.40 | 0.001929 |
S | 677 | Q677H | caG | caT | 2 | 2 | AY.46.3 | 0.001867 |
S | 677 | Q677H | caG | caT | 2 | 2 | AY.46.4 | 0.000329 |
S | 677 | Q677H | caG | caT | 2 | 2 | AY.46.5 | 0.000397 |
S | 677 | Q677H | caG | caT | 1 | 2 | AY.59 | 0.00053 |
S | 677 | Q677H | caG | caC | 1 | 2 | AY.59 | 0.00053 |
S | 677 | Q677H | caG | caT | 2 | 2 | AY.63 | 0.000774 |
S | 677 | Q677H | caG | caT | 2 | 2 | AY.7 | 0.000392 |
S | 677 | Q677H | caG | caT | 2 | 2 | AY.70 | 0.000417 |
S | 677 | Q677H | caG | caT | 2 | 2 | AY.77 | 0.002255 |
S | 677 | Q677H | caG | caT | 2 | 2 | AY.82 | 0.002714 |
S | 677 | Q677H | caG | caT | 1 | 2 | AY.85 | 0.000427 |
S | 677 | Q677H | caG | caC | 1 | 2 | AY.85 | 0.000427 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.128 | 0.014184 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.201 | 0.04878 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.219 | 0.01 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.232 | 0.00363 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.241 | 0.004141 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.329 | 0.007692 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.344 | 0.021505 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.375 | 0.02381 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.377 | 0.002762 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.389 | 0.012121 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.407 | 0.083333 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.412 | 0.015267 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.413 | 0.013793 |
S | 677 | Q677H | caG | caC | 2 | 2 | B.1.1.44 | 0.004819 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.448 | 0.004065 |
S | 677 | Q677H | caG | caC | 1 | 2 | B.1.1.464 | 0.001473 |
S | 677 | Q677H | caG | caT | 1 | 2 | B.1.1.464 | 0.001473 |
S | 677 | Q677H | caG | caC | 2 | 2 | B.1.1.467 | 0.038462 |
S | 677 | Q677H | caG | caC | 2 | 2 | B.1.1.526 | 0.007092 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.1.56 | 0.035714 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.118 | 0.013423 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.177.31 | 0.022989 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.177.47 | 0.025974 |
S | 677 | Q677H | caG | caT | 1 | 2 | B.1.177.56 | 0.000668 |
S | 677 | Q677H | caG | caC | 1 | 2 | B.1.177.56 | 0.000668 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.177.6 | 0.001953 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.214.2 | 0.001199 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.258.16 | 0.003273 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.36.1 | 0.002281 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.36.19 | 0.018519 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.36.34 | 0.042553 |
S | 677 | Q677H | caG | caT | 1 | 2 | B.1.375 | 0.00082 |
S | 677 | Q677H | caG | caC | 1 | 2 | B.1.375 | 0.00082 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.416.1 | 0.003125 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.420 | 0.020833 |
S | 677 | Q677H | caG | caC | 2 | 2 | B.1.462 | 0.014493 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.530 | 0.014286 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.533 | 0.019231 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.586 | 0.021978 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.591 | 0.021277 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.612 | 0.005305 |
S | 677 | Q677H | caG | caC | 2 | 2 | B.1.627 | 0.00404 |
S | 677 | Q677H | caG | caT | 1 | 2 | B.1.78 | 0.008547 |
S | 677 | Q677H | caG | caC | 1 | 2 | B.1.78 | 0.008547 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.81 | 0.042553 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.1.88.1 | 0.009615 |
S | 677 | Q677H | caG | caT | 2 | 2 | B.6.6 | 0.001778 |
S | 677 | Q677H | caG | caC | 2 | 2 | C.22 | 0.142857 |
S | 677 | Q677H | caG | caC | 2 | 2 | C.30 | 0.003454 |
S | 677 | Q677H | caG | caT | 2 | 2 | C.35 | 0.001548 |
S | 677 | Q677H | caG | caT | 2 | 2 | N.9 | 0.011905 |
S | 677 | Q677H | caG | caT | 2 | 2 | P.1.4 | 0.001953 |
S | 677 | Q677H | caG | caT | 2 | 2 | P.5 | 0.027397 |
S | 677 | Q677H | caG | caT | 1 | 1 | A.6 | 0.005128 |
S | 677 | Q677H | caG | caT | 1 | 1 | AE.4 | 0.043478 |
S | 677 | Q677H | caG | caT | 1 | 1 | AT.1 | 0.005128 |
S | 677 | Q677H | caG | caC | 1 | 1 | AU.2 | 0.002421 |
S | 677 | Q677H | caG | caT | 1 | 1 | AU.3 | 0.00211 |
S | 677 | Q677H | caG | caC | 1 | 1 | AY.107 | 0.000466 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.111 | 0.000183 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.114 | 0.000231 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.116.1 | 0.000311 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.120.2 | 0.001285 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.19 | 0.00114 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.30 | 0.000396 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.38 | 0.000499 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.39.1.1 | 0.000725 |
S | 677 | Q677H | caG | caC | 1 | 1 | AY.39.2 | 0.001541 |
S | 677 | Q677H | caG | caC | 1 | 1 | AY.4.3 | 0.000842 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.51 | 0.000909 |
S | 677 | Q677H | caG | caC | 1 | 1 | AY.52 | 0.000814 |
S | 677 | Q677H | caG | caC | 1 | 1 | AY.56 | 0.001605 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.57 | 0.000656 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.64 | 0.000595 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.7.2 | 0.000559 |
S | 677 | Q677H | caG | caC | 1 | 1 | AY.76 | 0.004831 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.79 | 0.001211 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.90 | 0.000684 |
S | 677 | Q677H | caG | caC | 1 | 1 | AY.95 | 0.000761 |
S | 677 | Q677H | caG | caC | 1 | 1 | AY.96 | 0.002075 |
S | 677 | Q677H | caG | caT | 1 | 1 | AY.97 | 0.001701 |
S | 677 | Q677H | caG | caC | 1 | 1 | AY.99.1 | 0.001553 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.132 | 0.014925 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.142 | 0.017544 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.153 | 0.001095 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.1.158 | 0.012195 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.161 | 0.003534 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.177 | 0.019231 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.189 | 0.001513 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.198 | 0.001468 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.200 | 0.007463 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.218 | 0.007692 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.1.225 | 0.007194 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.254 | 0.011236 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.269 | 0.001353 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.274 | 0.005051 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.1.291 | 0.000742 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.298 | 0.000862 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.1.304 | 0.002809 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.309 | 0.005848 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.311 | 0.000358 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.322 | 0.008772 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.353 | 0.020833 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.369 | 0.000446 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.378 | 0.007299 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.409 | 0.002833 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.419 | 0.007407 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.421 | 0.030303 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.1.432 | 0.001266 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.45 | 0.014085 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.459 | 0.015385 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.46 | 0.004367 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.47 | 0.005348 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.1.482 | 0.023256 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.523 | 0.001563 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.528 | 0.004808 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.1.8 | 0.003584 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.110.3 | 0.000718 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.145 | 0.052632 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.147 | 0.000756 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.157 | 0.002985 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.160.12 | 0.00641 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.160.16 | 0.000929 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.160.24 | 0.004425 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.160.31 | 0.008065 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.177.15 | 0.000631 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.177.17 | 0.000821 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.177.18 | 0.00116 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.177.42 | 0.000894 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.177.43 | 0.001477 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.177.52 | 0.001757 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.177.54 | 0.000606 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.177.57 | 0.000281 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.177.65 | 0.000665 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.177.72 | 0.00339 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.177.82 | 0.000477 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.177.9 | 0.001332 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.195 | 0.005025 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.214 | 0.003663 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.22 | 0.001318 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.221.1 | 0.002907 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.239 | 0.001221 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.247 | 0.014925 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.258.11 | 0.000396 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.260 | 0.003344 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.293 | 0.0125 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.306 | 0.005714 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.326 | 0.007576 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.36.12 | 0.009615 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.36.38 | 0.001642 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.36.39 | 0.002217 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.371 | 0.001122 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.391 | 0.001127 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.397 | 0.004854 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.398 | 0.002976 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.424 | 0.008065 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.428 | 0.00102 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.433 | 0.003195 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.442 | 0.035714 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.445 | 0.011765 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.450 | 0.011364 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.452 | 0.013699 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.471 | 0.002732 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.478 | 0.011765 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.509 | 0.000866 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.517 | 0.000427 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.524 | 0.001406 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.555 | 0.022222 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.567 | 0.003333 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.568 | 0.001111 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.574 | 0.002151 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.575 | 0.000303 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.575.2 | 0.004808 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.606 | 0.006024 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.617.3 | 0.002985 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.619 | 0.000871 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.629 | 0.013333 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.1.630 | 0.005236 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.636 | 0.006711 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.1.94 | 0.027027 |
S | 677 | Q677H | caG | caC | 1 | 1 | B.10 | 0.008264 |
S | 677 | Q677H | caG | caT | 1 | 1 | B.55 | 0.00295 |
S | 677 | Q677H | caG | caC | 1 | 1 | C.1 | 0.002392 |
S | 677 | Q677H | caG | caC | 1 | 1 | C.1.1 | 0.076923 |
S | 677 | Q677H | caG | caT | 1 | 1 | C.1.2 | 0.004255 |
S | 677 | Q677H | caG | caT | 1 | 1 | C.18 | 0.002591 |
S | 677 | Q677H | caG | caT | 1 | 1 | C.26 | 0.007353 |
S | 677 | Q677H | caG | caC | 1 | 1 | C.37.1 | 0.002618 |
S | 677 | Q677H | caG | caT | 1 | 1 | K.1 | 0.02381 |
S | 677 | Q677H | caG | caT | 1 | 1 | L.2 | 0.011364 |
S | 677 | Q677H | caG | caT | 1 | 1 | P.1.8 | 0.004785 |
S | 677 | Q677H | caG | caT | 1 | 1 | Q.4 | 0.000455 |
S | 677 | Q677H | caG | caT | 1 | 1 | Q.6 | 0.006623 |
S | 677 | Q677H | caG | caT | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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