CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 675 | Q675H | nonsyn | caG | caT | 33264 | 20426 | 0.614057 | 23585-23587 | |
S | 675 | Q675H | nonsyn | caG | caC | 33264 | 12838 | 0.385943 | 23585-23587 |
Details of the mutation Q675H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 675 | Q675H | caG | caT | 20426 | 33264 | All | 0.003907 |
S | 675 | Q675H | caG | caC | 12838 | 33264 | All | 0.002455 |
S | 675 | Q675H | caG | caT | 9210 | 9214 | B.1.438.1 | 0.987879 |
S | 675 | Q675H | caG | caC | 4 | 9214 | B.1.438.1 | 0.000429 |
S | 675 | Q675H | caG | caC | 6368 | 6376 | AY.119 | 0.224843 |
S | 675 | Q675H | caG | caT | 8 | 6376 | AY.119 | 0.000282 |
S | 675 | Q675H | caG | caT | 3121 | 3121 | B.1.1.214 | 0.173081 |
S | 675 | Q675H | caG | caT | 2016 | 2044 | B.1.177 | 0.026546 |
S | 675 | Q675H | caG | caC | 28 | 2044 | B.1.177 | 0.000369 |
S | 675 | Q675H | caG | caC | 1079 | 1851 | B.1.1.7 | 0.000966 |
S | 675 | Q675H | caG | caT | 772 | 1851 | B.1.1.7 | 0.000691 |
S | 675 | Q675H | caG | caC | 1622 | 1640 | B.1.243 | 0.112866 |
S | 675 | Q675H | caG | caT | 18 | 1640 | B.1.243 | 0.001253 |
S | 675 | Q675H | caG | caC | 390 | 630 | B.1 | 0.003572 |
S | 675 | Q675H | caG | caT | 240 | 630 | B.1 | 0.002198 |
S | 675 | Q675H | caG | caT | 580 | 594 | C.37 | 0.067317 |
S | 675 | Q675H | caG | caC | 14 | 594 | C.37 | 0.001625 |
S | 675 | Q675H | caG | caC | 305 | 532 | B.1.2 | 0.002686 |
S | 675 | Q675H | caG | caT | 227 | 532 | B.1.2 | 0.001999 |
S | 675 | Q675H | caG | caT | 371 | 527 | P.1 | 0.005845 |
S | 675 | Q675H | caG | caC | 156 | 527 | P.1 | 0.002458 |
S | 675 | Q675H | caG | caC | 313 | 470 | B.1.617.2 | 0.001179 |
S | 675 | Q675H | caG | caT | 157 | 470 | B.1.617.2 | 0.000591 |
S | 675 | Q675H | caG | caC | 338 | 386 | B.1.1.306 | 0.148181 |
S | 675 | Q675H | caG | caT | 48 | 386 | B.1.1.306 | 0.021043 |
S | 675 | Q675H | caG | caC | 304 | 304 | P.6 | 0.955975 |
S | 675 | Q675H | caG | caT | 276 | 284 | P.1.14 | 0.013193 |
S | 675 | Q675H | caG | caC | 8 | 284 | P.1.14 | 0.000382 |
S | 675 | Q675H | caG | caT | 190 | 259 | B.1.1 | 0.003447 |
S | 675 | Q675H | caG | caC | 69 | 259 | B.1.1 | 0.001252 |
S | 675 | Q675H | caG | caT | 142 | 252 | B.1.36 | 0.020718 |
S | 675 | Q675H | caG | caC | 110 | 252 | B.1.36 | 0.016049 |
S | 675 | Q675H | caG | caT | 123 | 239 | B.1.351 | 0.003656 |
S | 675 | Q675H | caG | caC | 116 | 239 | B.1.351 | 0.003448 |
S | 675 | Q675H | caG | caT | 192 | 230 | AY.4 | 0.000299 |
S | 675 | Q675H | caG | caC | 38 | 230 | AY.4 | 0.000059 |
S | 675 | Q675H | caG | caT | 220 | 220 | B.1.1.385 | 0.982143 |
S | 675 | Q675H | caG | caC | 209 | 209 | B.1.599 | 0.762774 |
S | 675 | Q675H | caG | caC | 202 | 202 | P.1.9 | 0.971154 |
S | 675 | Q675H | caG | caC | 134 | 180 | B.1.1.25 | 0.07618 |
S | 675 | Q675H | caG | caT | 46 | 180 | B.1.1.25 | 0.026151 |
S | 675 | Q675H | caG | caC | 86 | 164 | AY.43 | 0.000381 |
S | 675 | Q675H | caG | caT | 78 | 164 | AY.43 | 0.000346 |
S | 675 | Q675H | caG | caT | 161 | 161 | C.37.1 | 0.421466 |
S | 675 | Q675H | caG | caT | 138 | 160 | B.1.160 | 0.004304 |
S | 675 | Q675H | caG | caC | 22 | 160 | B.1.160 | 0.000686 |
S | 675 | Q675H | caG | caT | 121 | 121 | B.1.544 | 0.728916 |
S | 675 | Q675H | caG | caT | 93 | 98 | AY.103 | 0.000577 |
S | 675 | Q675H | caG | caC | 5 | 98 | AY.103 | 0.000031 |
S | 675 | Q675H | caG | caT | 76 | 80 | B.1.258 | 0.005058 |
S | 675 | Q675H | caG | caC | 4 | 80 | B.1.258 | 0.000266 |
S | 675 | Q675H | caG | caC | 67 | 79 | B.1.429 | 0.001576 |
S | 675 | Q675H | caG | caT | 12 | 79 | B.1.429 | 0.000282 |
S | 675 | Q675H | caG | caT | 60 | 76 | AY.25 | 0.000361 |
S | 675 | Q675H | caG | caC | 16 | 76 | AY.25 | 0.000096 |
S | 675 | Q675H | caG | caT | 70 | 70 | AY.98.1 | 0.00339 |
S | 675 | Q675H | caG | caT | 69 | 69 | B.1.1.129 | 0.633028 |
S | 675 | Q675H | caG | caT | 66 | 69 | B.1.1.28 | 0.020542 |
S | 675 | Q675H | caG | caC | 3 | 69 | B.1.1.28 | 0.000934 |
S | 675 | Q675H | caG | caT | 65 | 65 | B.1.1.297 | 0.145414 |
S | 675 | Q675H | caG | caT | 65 | 65 | B.1.438 | 0.424837 |
S | 675 | Q675H | caG | caT | 63 | 64 | B.1.1.369 | 0.028112 |
S | 675 | Q675H | caG | caC | 1 | 64 | B.1.1.369 | 0.000446 |
S | 675 | Q675H | caG | caT | 40 | 64 | B.1.526 | 0.00094 |
S | 675 | Q675H | caG | caC | 24 | 64 | B.1.526 | 0.000564 |
S | 675 | Q675H | caG | caT | 61 | 61 | N.6 | 0.432624 |
S | 675 | Q675H | caG | caC | 52 | 54 | B.1.369 | 0.014832 |
S | 675 | Q675H | caG | caT | 2 | 54 | B.1.369 | 0.00057 |
S | 675 | Q675H | caG | caT | 51 | 52 | AY.102 | 0.001352 |
S | 675 | Q675H | caG | caC | 1 | 52 | AY.102 | 0.000027 |
S | 675 | Q675H | caG | caT | 52 | 52 | B.1.438.2 | 1 |
S | 675 | Q675H | caG | caT | 30 | 49 | AY.44 | 0.000183 |
S | 675 | Q675H | caG | caC | 19 | 49 | AY.44 | 0.000116 |
S | 675 | Q675H | caG | caT | 29 | 48 | P.1.17 | 0.004691 |
S | 675 | Q675H | caG | caC | 19 | 48 | P.1.17 | 0.003073 |
S | 675 | Q675H | caG | caC | 42 | 42 | B.1.1.304 | 0.117978 |
S | 675 | Q675H | caG | caC | 36 | 41 | B.1.538 | 0.290323 |
S | 675 | Q675H | caG | caT | 5 | 41 | B.1.538 | 0.040323 |
S | 675 | Q675H | caG | caT | 26 | 40 | B.1.596 | 0.002266 |
S | 675 | Q675H | caG | caC | 14 | 40 | B.1.596 | 0.00122 |
S | 675 | Q675H | caG | caT | 23 | 34 | B.1.221 | 0.001634 |
S | 675 | Q675H | caG | caC | 11 | 34 | B.1.221 | 0.000781 |
S | 675 | Q675H | caG | caC | 34 | 34 | L.3 | 0.120567 |
S | 675 | Q675H | caG | caC | 30 | 33 | B.1.1.63 | 0.011574 |
S | 675 | Q675H | caG | caT | 3 | 33 | B.1.1.63 | 0.001157 |
S | 675 | Q675H | caG | caT | 33 | 33 | B.1.160.30 | 0.098214 |
S | 675 | Q675H | caG | caC | 32 | 32 | B.1.199 | 0.132231 |
S | 675 | Q675H | caG | caT | 29 | 29 | B.1.177.21 | 0.002218 |
S | 675 | Q675H | caG | caC | 27 | 29 | P.1.7 | 0.008621 |
S | 675 | Q675H | caG | caT | 2 | 29 | P.1.7 | 0.000639 |
S | 675 | Q675H | caG | caT | 26 | 27 | B.1.1.222 | 0.005304 |
S | 675 | Q675H | caG | caC | 1 | 27 | B.1.1.222 | 0.000204 |
S | 675 | Q675H | caG | caT | 15 | 27 | P.2 | 0.0028 |
S | 675 | Q675H | caG | caC | 12 | 27 | P.2 | 0.00224 |
S | 675 | Q675H | caG | caC | 18 | 26 | B.1.1.216 | 0.016028 |
S | 675 | Q675H | caG | caT | 8 | 26 | B.1.1.216 | 0.007124 |
S | 675 | Q675H | caG | caT | 21 | 26 | B.1.311 | 0.005766 |
S | 675 | Q675H | caG | caC | 5 | 26 | B.1.311 | 0.001373 |
S | 675 | Q675H | caG | caT | 24 | 25 | AY.5 | 0.000496 |
S | 675 | Q675H | caG | caC | 1 | 25 | AY.5 | 0.000021 |
S | 675 | Q675H | caG | caT | 24 | 24 | B.1.590 | 0.109091 |
S | 675 | Q675H | caG | caT | 23 | 24 | P.1.2 | 0.02659 |
S | 675 | Q675H | caG | caC | 1 | 24 | P.1.2 | 0.001156 |
S | 675 | Q675H | caG | caT | 19 | 23 | AY.3 | 0.000189 |
S | 675 | Q675H | caG | caC | 4 | 23 | AY.3 | 0.00004 |
S | 675 | Q675H | caG | caT | 22 | 23 | AY.9 | 0.001487 |
S | 675 | Q675H | caG | caC | 1 | 23 | AY.9 | 0.000068 |
S | 675 | Q675H | caG | caC | 16 | 23 | B.1.1.33 | 0.006734 |
S | 675 | Q675H | caG | caT | 7 | 23 | B.1.1.33 | 0.002946 |
S | 675 | Q675H | caG | caC | 23 | 23 | B.1.237 | 0.114428 |
S | 675 | Q675H | caG | caT | 22 | 22 | B.1.177.87 | 0.016012 |
S | 675 | Q675H | caG | caT | 14 | 22 | B.1.637 | 0.001023 |
S | 675 | Q675H | caG | caC | 8 | 22 | B.1.637 | 0.000585 |
S | 675 | Q675H | caG | caT | 21 | 21 | AD.2 | 0.004598 |
S | 675 | Q675H | caG | caT | 19 | 19 | B.1.1.163 | 0.145038 |
S | 675 | Q675H | caG | caT | 19 | 19 | B.1.1.70 | 0.00648 |
S | 675 | Q675H | caG | caT | 19 | 19 | B.1.177.39 | 0.292308 |
S | 675 | Q675H | caG | caT | 11 | 19 | B.1.470 | 0.015449 |
S | 675 | Q675H | caG | caC | 8 | 19 | B.1.470 | 0.011236 |
S | 675 | Q675H | caG | caC | 11 | 19 | P.1.15 | 0.002556 |
S | 675 | Q675H | caG | caT | 8 | 19 | P.1.15 | 0.001859 |
S | 675 | Q675H | caG | caT | 16 | 18 | AY.33 | 0.001068 |
S | 675 | Q675H | caG | caC | 2 | 18 | AY.33 | 0.000134 |
S | 675 | Q675H | caG | caT | 13 | 18 | B.1.1.326 | 0.022887 |
S | 675 | Q675H | caG | caC | 5 | 18 | B.1.1.326 | 0.008803 |
S | 675 | Q675H | caG | caC | 16 | 17 | AY.23 | 0.001116 |
S | 675 | Q675H | caG | caT | 1 | 17 | AY.23 | 0.00007 |
S | 675 | Q675H | caG | caC | 16 | 17 | B.1.177.86 | 0.002935 |
S | 675 | Q675H | caG | caT | 1 | 17 | B.1.177.86 | 0.000183 |
S | 675 | Q675H | caG | caT | 13 | 17 | B.1.36.29 | 0.006725 |
S | 675 | Q675H | caG | caC | 4 | 17 | B.1.36.29 | 0.002069 |
S | 675 | Q675H | caG | caT | 9 | 17 | B.1.36.8 | 0.009 |
S | 675 | Q675H | caG | caC | 8 | 17 | B.1.36.8 | 0.008 |
S | 675 | Q675H | caG | caT | 16 | 16 | B.1.1.159 | 0.074766 |
S | 675 | Q675H | caG | caC | 8 | 16 | P.1.1 | 0.002541 |
S | 675 | Q675H | caG | caT | 8 | 16 | P.1.1 | 0.002541 |
S | 675 | Q675H | caG | caC | 8 | 15 | A.2.5 | 0.003992 |
S | 675 | Q675H | caG | caT | 7 | 15 | A.2.5 | 0.003493 |
S | 675 | Q675H | caG | caC | 13 | 15 | AY.118 | 0.000814 |
S | 675 | Q675H | caG | caT | 2 | 15 | AY.118 | 0.000125 |
S | 675 | Q675H | caG | caC | 10 | 15 | B.1.36.22 | 0.012077 |
S | 675 | Q675H | caG | caT | 5 | 15 | B.1.36.22 | 0.006039 |
S | 675 | Q675H | caG | caT | 15 | 15 | B.1.362 | 0.023112 |
S | 675 | Q675H | caG | caC | 11 | 14 | AY.29 | 0.000174 |
S | 675 | Q675H | caG | caT | 3 | 14 | AY.29 | 0.000047 |
S | 675 | Q675H | caG | caT | 8 | 14 | AY.39 | 0.000198 |
S | 675 | Q675H | caG | caC | 6 | 14 | AY.39 | 0.000148 |
S | 675 | Q675H | caG | caT | 13 | 14 | B.1.1.37 | 0.002507 |
S | 675 | Q675H | caG | caC | 1 | 14 | B.1.1.37 | 0.000193 |
S | 675 | Q675H | caG | caC | 11 | 14 | B.1.525 | 0.001245 |
S | 675 | Q675H | caG | caT | 3 | 14 | B.1.525 | 0.000339 |
S | 675 | Q675H | caG | caT | 14 | 14 | C.16 | 0.014846 |
S | 675 | Q675H | caG | caT | 13 | 13 | AY.27 | 0.000841 |
S | 675 | Q675H | caG | caT | 13 | 13 | B.1.1.420 | 0.013078 |
S | 675 | Q675H | caG | caT | 13 | 13 | B.1.1.521 | 0.069519 |
S | 675 | Q675H | caG | caT | 13 | 13 | B.1.438.3 | 1 |
S | 675 | Q675H | caG | caT | 9 | 12 | B.1.456 | 0.029412 |
S | 675 | Q675H | caG | caC | 3 | 12 | B.1.456 | 0.009804 |
S | 675 | Q675H | caG | caT | 9 | 11 | B.1.177.4 | 0.0019 |
S | 675 | Q675H | caG | caC | 2 | 11 | B.1.177.4 | 0.000422 |
S | 675 | Q675H | caG | caT | 11 | 11 | B.1.195 | 0.055276 |
S | 675 | Q675H | caG | caC | 11 | 11 | B.1.409 | 0.008594 |
S | 675 | Q675H | caG | caC | 9 | 10 | B.1.240 | 0.00194 |
S | 675 | Q675H | caG | caT | 1 | 10 | B.1.240 | 0.000216 |
S | 675 | Q675H | caG | caT | 9 | 9 | AY.46.6 | 0.00065 |
S | 675 | Q675H | caG | caC | 8 | 9 | B.1.1.10 | 0.008919 |
S | 675 | Q675H | caG | caT | 1 | 9 | B.1.1.10 | 0.001115 |
S | 675 | Q675H | caG | caT | 8 | 9 | B.1.1.39 | 0.004077 |
S | 675 | Q675H | caG | caC | 1 | 9 | B.1.1.39 | 0.00051 |
S | 675 | Q675H | caG | caC | 9 | 9 | B.1.588 | 0.008189 |
S | 675 | Q675H | caG | caT | 7 | 9 | B.1.595 | 0.001827 |
S | 675 | Q675H | caG | caC | 2 | 9 | B.1.595 | 0.000522 |
S | 675 | Q675H | caG | caT | 4 | 8 | AY.117 | 0.000338 |
S | 675 | Q675H | caG | caC | 4 | 8 | AY.117 | 0.000338 |
S | 675 | Q675H | caG | caC | 8 | 8 | AY.39.1 | 0.000317 |
S | 675 | Q675H | caG | caT | 8 | 8 | B.1.36.18 | 0.003361 |
S | 675 | Q675H | caG | caT | 5 | 8 | B.1.367 | 0.003962 |
S | 675 | Q675H | caG | caC | 3 | 8 | B.1.367 | 0.002377 |
S | 675 | Q675H | caG | caT | 7 | 8 | B.1.499 | 0.007353 |
S | 675 | Q675H | caG | caC | 1 | 8 | B.1.499 | 0.00105 |
S | 675 | Q675H | caG | caC | 8 | 8 | B.1.623 | 0.004292 |
S | 675 | Q675H | caG | caC | 4 | 8 | Q.1 | 0.000505 |
S | 675 | Q675H | caG | caT | 4 | 8 | Q.1 | 0.000505 |
S | 675 | Q675H | caG | caT | 6 | 8 | Q.8 | 0.000989 |
S | 675 | Q675H | caG | caC | 2 | 8 | Q.8 | 0.00033 |
S | 675 | Q675H | caG | caT | 7 | 7 | AY.20 | 0.000272 |
S | 675 | Q675H | caG | caT | 7 | 7 | AY.4.2 | 0.000152 |
S | 675 | Q675H | caG | caT | 7 | 7 | B.1.1.485 | 0.116667 |
S | 675 | Q675H | caG | caC | 6 | 7 | B.1.160.14 | 0.012712 |
S | 675 | Q675H | caG | caT | 1 | 7 | B.1.160.14 | 0.002119 |
S | 675 | Q675H | caG | caT | 7 | 7 | B.1.177.82 | 0.003341 |
S | 675 | Q675H | caG | caT | 7 | 7 | B.1.466 | 0.162791 |
S | 675 | Q675H | caG | caT | 7 | 7 | B.1.561 | 0.002779 |
S | 675 | Q675H | caG | caC | 4 | 7 | B.1.621 | 0.000354 |
S | 675 | Q675H | caG | caT | 3 | 7 | B.1.621 | 0.000266 |
S | 675 | Q675H | caG | caT | 5 | 7 | C.36 | 0.004554 |
S | 675 | Q675H | caG | caC | 2 | 7 | C.36 | 0.001821 |
S | 675 | Q675H | caG | caT | 4 | 7 | P.1.12 | 0.001936 |
S | 675 | Q675H | caG | caC | 3 | 7 | P.1.12 | 0.001452 |
S | 675 | Q675H | caG | caT | 5 | 6 | AY.16 | 0.001898 |
S | 675 | Q675H | caG | caC | 1 | 6 | AY.16 | 0.00038 |
S | 675 | Q675H | caG | caT | 5 | 6 | AY.42 | 0.000201 |
S | 675 | Q675H | caG | caC | 1 | 6 | AY.42 | 0.00004 |
S | 675 | Q675H | caG | caT | 6 | 6 | B.1.1.220 | 0.011152 |
S | 675 | Q675H | caG | caT | 6 | 6 | B.1.1.348 | 0.004777 |
S | 675 | Q675H | caG | caT | 6 | 6 | B.1.177.62 | 0.007151 |
S | 675 | Q675H | caG | caT | 6 | 6 | B.1.400 | 0.002574 |
S | 675 | Q675H | caG | caC | 5 | 5 | A.21 | 0.01385 |
S | 675 | Q675H | caG | caT | 5 | 5 | AY.116 | 0.001434 |
S | 675 | Q675H | caG | caT | 5 | 5 | AY.3.1 | 0.000426 |
S | 675 | Q675H | caG | caC | 4 | 5 | AY.98 | 0.000316 |
S | 675 | Q675H | caG | caT | 1 | 5 | AY.98 | 0.000079 |
S | 675 | Q675H | caG | caT | 5 | 5 | B.1.1.232 | 0.009074 |
S | 675 | Q675H | caG | caT | 5 | 5 | B.1.1.67 | 0.022831 |
S | 675 | Q675H | caG | caT | 5 | 5 | B.1.177.31 | 0.057471 |
S | 675 | Q675H | caG | caT | 5 | 5 | B.1.177.43 | 0.007386 |
S | 675 | Q675H | caG | caT | 3 | 5 | B.1.234 | 0.000396 |
S | 675 | Q675H | caG | caC | 2 | 5 | B.1.234 | 0.000264 |
S | 675 | Q675H | caG | caT | 4 | 5 | B.1.609 | 0.001918 |
S | 675 | Q675H | caG | caC | 1 | 5 | B.1.609 | 0.000479 |
S | 675 | Q675H | caG | caT | 4 | 5 | R.1 | 0.00036 |
S | 675 | Q675H | caG | caC | 1 | 5 | R.1 | 0.00009 |
S | 675 | Q675H | caG | caC | 2 | 4 | AY.113 | 0.000285 |
S | 675 | Q675H | caG | caT | 2 | 4 | AY.113 | 0.000285 |
S | 675 | Q675H | caG | caC | 3 | 4 | AY.99.2 | 0.000276 |
S | 675 | Q675H | caG | caT | 1 | 4 | AY.99.2 | 0.000092 |
S | 675 | Q675H | caG | caT | 2 | 4 | B | 0.000256 |
S | 675 | Q675H | caG | caC | 2 | 4 | B | 0.000256 |
S | 675 | Q675H | caG | caT | 3 | 4 | B.1.1.1 | 0.00098 |
S | 675 | Q675H | caG | caC | 1 | 4 | B.1.1.1 | 0.000327 |
S | 675 | Q675H | caG | caT | 4 | 4 | B.1.1.174 | 0.013514 |
S | 675 | Q675H | caG | caC | 3 | 4 | B.1.1.243 | 0.012245 |
S | 675 | Q675H | caG | caT | 1 | 4 | B.1.1.243 | 0.004082 |
S | 675 | Q675H | caG | caC | 4 | 4 | B.1.1.317 | 0.001647 |
S | 675 | Q675H | caG | caT | 2 | 4 | B.1.1.434 | 0.000697 |
S | 675 | Q675H | caG | caC | 2 | 4 | B.1.1.434 | 0.000697 |
S | 675 | Q675H | caG | caT | 3 | 4 | B.1.1.519 | 0.000119 |
S | 675 | Q675H | caG | caC | 1 | 4 | B.1.1.519 | 0.00004 |
S | 675 | Q675H | caG | caC | 3 | 4 | B.1.177.52 | 0.005272 |
S | 675 | Q675H | caG | caT | 1 | 4 | B.1.177.52 | 0.001757 |
S | 675 | Q675H | caG | caT | 2 | 4 | B.1.177.75 | 0.002081 |
S | 675 | Q675H | caG | caC | 2 | 4 | B.1.177.75 | 0.002081 |
S | 675 | Q675H | caG | caT | 4 | 4 | B.1.309 | 0.190476 |
S | 675 | Q675H | caG | caT | 4 | 4 | B.1.36.16 | 0.005698 |
S | 675 | Q675H | caG | caT | 4 | 4 | B.1.36.19 | 0.037037 |
S | 675 | Q675H | caG | caC | 4 | 4 | B.1.416 | 0.005076 |
S | 675 | Q675H | caG | caC | 2 | 4 | B.1.427 | 0.000101 |
S | 675 | Q675H | caG | caT | 2 | 4 | B.1.427 | 0.000101 |
S | 675 | Q675H | caG | caT | 4 | 4 | C.8 | 0.017857 |
S | 675 | Q675H | caG | caT | 2 | 3 | A | 0.000774 |
S | 675 | Q675H | caG | caC | 1 | 3 | A | 0.000387 |
S | 675 | Q675H | caG | caT | 3 | 3 | AY.105 | 0.001929 |
S | 675 | Q675H | caG | caT | 3 | 3 | AY.106 | 0.001005 |
S | 675 | Q675H | caG | caT | 3 | 3 | AY.120 | 0.000112 |
S | 675 | Q675H | caG | caC | 3 | 3 | AY.45 | 0.000365 |
S | 675 | Q675H | caG | caC | 2 | 3 | AY.46 | 0.000208 |
S | 675 | Q675H | caG | caT | 1 | 3 | AY.46 | 0.000104 |
S | 675 | Q675H | caG | caT | 2 | 3 | B.1.1.277 | 0.001517 |
S | 675 | Q675H | caG | caC | 1 | 3 | B.1.1.277 | 0.000759 |
S | 675 | Q675H | caG | caC | 3 | 3 | B.1.1.333 | 0.003229 |
S | 675 | Q675H | caG | caT | 2 | 3 | B.1.1.372 | 0.001377 |
S | 675 | Q675H | caG | caC | 1 | 3 | B.1.1.372 | 0.000689 |
S | 675 | Q675H | caG | caT | 3 | 3 | B.1.1.448 | 0.006098 |
S | 675 | Q675H | caG | caC | 2 | 3 | B.1.177.44 | 0.001038 |
S | 675 | Q675H | caG | caT | 1 | 3 | B.1.177.44 | 0.000519 |
S | 675 | Q675H | caG | caC | 2 | 3 | B.1.177.81 | 0.000379 |
S | 675 | Q675H | caG | caT | 1 | 3 | B.1.177.81 | 0.000189 |
S | 675 | Q675H | caG | caT | 2 | 3 | B.1.210 | 0.004264 |
S | 675 | Q675H | caG | caC | 1 | 3 | B.1.210 | 0.002132 |
S | 675 | Q675H | caG | caC | 2 | 3 | B.1.232 | 0.001075 |
S | 675 | Q675H | caG | caT | 1 | 3 | B.1.232 | 0.000537 |
S | 675 | Q675H | caG | caT | 3 | 3 | B.1.236 | 0.00616 |
S | 675 | Q675H | caG | caC | 2 | 3 | B.1.351.2 | 0.000605 |
S | 675 | Q675H | caG | caT | 1 | 3 | B.1.351.2 | 0.000303 |
S | 675 | Q675H | caG | caC | 2 | 3 | B.1.351.3 | 0.001753 |
S | 675 | Q675H | caG | caT | 1 | 3 | B.1.351.3 | 0.000876 |
S | 675 | Q675H | caG | caT | 3 | 3 | B.1.468 | 0.017143 |
S | 675 | Q675H | caG | caC | 3 | 3 | B.1.523 | 0.007353 |
S | 675 | Q675H | caG | caC | 3 | 3 | B.1.524 | 0.004219 |
S | 675 | Q675H | caG | caT | 3 | 3 | B.1.560 | 0.013889 |
S | 675 | Q675H | caG | caT | 2 | 3 | B.1.600 | 0.011696 |
S | 675 | Q675H | caG | caC | 1 | 3 | B.1.600 | 0.005848 |
S | 675 | Q675H | caG | caC | 3 | 3 | C.26 | 0.022059 |
S | 675 | Q675H | caG | caT | 2 | 3 | C.35 | 0.001548 |
S | 675 | Q675H | caG | caC | 1 | 3 | C.35 | 0.000774 |
S | 675 | Q675H | caG | caT | 3 | 3 | C.36.3 | 0.001702 |
S | 675 | Q675H | caG | caT | 2 | 3 | P.1.10 | 0.000539 |
S | 675 | Q675H | caG | caC | 1 | 3 | P.1.10 | 0.000269 |
S | 675 | Q675H | caG | caT | 3 | 3 | P.5 | 0.041096 |
S | 675 | Q675H | caG | caC | 3 | 3 | P.7 | 0.0131 |
S | 675 | Q675H | caG | caT | 2 | 2 | A.23.1 | 0.001408 |
S | 675 | Q675H | caG | caC | 2 | 2 | AE.6 | 0.076923 |
S | 675 | Q675H | caG | caC | 2 | 2 | AE.8 | 0.000978 |
S | 675 | Q675H | caG | caT | 2 | 2 | AY.100 | 0.000092 |
S | 675 | Q675H | caG | caT | 1 | 2 | AY.121 | 0.000135 |
S | 675 | Q675H | caG | caC | 1 | 2 | AY.121 | 0.000135 |
S | 675 | Q675H | caG | caC | 2 | 2 | AY.34 | 0.000194 |
S | 675 | Q675H | caG | caC | 1 | 2 | AY.47 | 0.000031 |
S | 675 | Q675H | caG | caT | 1 | 2 | AY.47 | 0.000031 |
S | 675 | Q675H | caG | caT | 2 | 2 | AY.57 | 0.001312 |
S | 675 | Q675H | caG | caT | 2 | 2 | AY.61 | 0.00021 |
S | 675 | Q675H | caG | caT | 2 | 2 | AY.76 | 0.009662 |
S | 675 | Q675H | caG | caT | 2 | 2 | AY.79 | 0.002421 |
S | 675 | Q675H | caG | caT | 2 | 2 | AY.9.1 | 0.000167 |
S | 675 | Q675H | caG | caT | 1 | 2 | AY.9.2 | 0.000037 |
S | 675 | Q675H | caG | caC | 1 | 2 | AY.9.2 | 0.000037 |
S | 675 | Q675H | caG | caT | 2 | 2 | AY.94 | 0.000885 |
S | 675 | Q675H | caG | caC | 1 | 2 | B.1.1.198 | 0.001468 |
S | 675 | Q675H | caG | caT | 1 | 2 | B.1.1.198 | 0.001468 |
S | 675 | Q675H | caG | caT | 2 | 2 | B.1.1.218 | 0.015385 |
S | 675 | Q675H | caG | caC | 1 | 2 | B.1.1.294 | 0.001266 |
S | 675 | Q675H | caG | caT | 1 | 2 | B.1.1.294 | 0.001266 |
S | 675 | Q675H | caG | caT | 2 | 2 | B.1.1.315 | 0.016949 |
S | 675 | Q675H | caG | caT | 2 | 2 | B.1.1.316 | 0.00185 |
S | 675 | Q675H | caG | caC | 2 | 2 | B.1.1.354 | 0.008772 |
S | 675 | Q675H | caG | caT | 2 | 2 | B.1.1.432 | 0.002532 |
S | 675 | Q675H | caG | caT | 2 | 2 | B.1.111 | 0.00235 |
S | 675 | Q675H | caG | caC | 2 | 2 | B.1.147 | 0.001512 |
S | 675 | Q675H | caG | caT | 2 | 2 | B.1.170 | 0.008621 |
S | 675 | Q675H | caG | caC | 2 | 2 | B.1.177.23 | 0.006472 |
S | 675 | Q675H | caG | caT | 2 | 2 | B.1.177.57 | 0.000562 |
S | 675 | Q675H | caG | caT | 1 | 2 | B.1.177.73 | 0.000566 |
S | 675 | Q675H | caG | caC | 1 | 2 | B.1.177.73 | 0.000566 |
S | 675 | Q675H | caG | caC | 1 | 2 | B.1.177.8 | 0.000752 |
S | 675 | Q675H | caG | caT | 1 | 2 | B.1.177.8 | 0.000752 |
S | 675 | Q675H | caG | caT | 2 | 2 | B.1.241 | 0.001623 |
S | 675 | Q675H | caG | caC | 1 | 2 | B.1.243.1 | 0.022222 |
S | 675 | Q675H | caG | caT | 1 | 2 | B.1.243.1 | 0.022222 |
S | 675 | Q675H | caG | caC | 2 | 2 | B.1.36.1 | 0.002281 |
S | 675 | Q675H | caG | caC | 2 | 2 | B.1.36.37 | 0.005556 |
S | 675 | Q675H | caG | caC | 2 | 2 | B.1.36.7 | 0.008 |
S | 675 | Q675H | caG | caC | 2 | 2 | B.1.399 | 0.003868 |
S | 675 | Q675H | caG | caT | 2 | 2 | B.1.509 | 0.001732 |
S | 675 | Q675H | caG | caT | 2 | 2 | B.1.533 | 0.019231 |
S | 675 | Q675H | caG | caT | 1 | 2 | B.1.565 | 0.00081 |
S | 675 | Q675H | caG | caC | 1 | 2 | B.1.565 | 0.00081 |
S | 675 | Q675H | caG | caT | 2 | 2 | B.1.575 | 0.000607 |
S | 675 | Q675H | caG | caC | 2 | 2 | B.1.576 | 0.001813 |
S | 675 | Q675H | caG | caT | 2 | 2 | B.1.619 | 0.001742 |
S | 675 | Q675H | caG | caT | 2 | 2 | B.1.620 | 0.001892 |
S | 675 | Q675H | caG | caT | 1 | 2 | B.1.628 | 0.000352 |
S | 675 | Q675H | caG | caC | 1 | 2 | B.1.628 | 0.000352 |
S | 675 | Q675H | caG | caC | 1 | 2 | B.1.93 | 0.000934 |
S | 675 | Q675H | caG | caT | 1 | 2 | B.1.93 | 0.000934 |
S | 675 | Q675H | caG | caT | 2 | 2 | B.40 | 0.000729 |
S | 675 | Q675H | caG | caC | 2 | 2 | N.4 | 0.008511 |
S | 675 | Q675H | caG | caC | 2 | 2 | P.1.16 | 0.000748 |
S | 675 | Q675H | caG | caC | 1 | 2 | Q.3 | 0.000145 |
S | 675 | Q675H | caG | caT | 1 | 2 | Q.3 | 0.000145 |
S | 675 | Q675H | caG | caT | 2 | 2 | Q.7 | 0.002222 |
S | 675 | Q675H | caG | caT | 1 | 1 | A.19 | 0.009434 |
S | 675 | Q675H | caG | caT | 1 | 1 | A.2.2 | 0.001689 |
S | 675 | Q675H | caG | caC | 1 | 1 | A.30 | 0.142857 |
S | 675 | Q675H | caG | caT | 1 | 1 | AE.2 | 0.058824 |
S | 675 | Q675H | caG | caC | 1 | 1 | AE.3 | 0.032258 |
S | 675 | Q675H | caG | caC | 1 | 1 | AE.4 | 0.043478 |
S | 675 | Q675H | caG | caT | 1 | 1 | AH.3 | 0.003802 |
S | 675 | Q675H | caG | caC | 1 | 1 | AY.107 | 0.000466 |
S | 675 | Q675H | caG | caC | 1 | 1 | AY.109 | 0.00074 |
S | 675 | Q675H | caG | caC | 1 | 1 | AY.110 | 0.000113 |
S | 675 | Q675H | caG | caT | 1 | 1 | AY.14 | 0.000088 |
S | 675 | Q675H | caG | caC | 1 | 1 | AY.32 | 0.000532 |
S | 675 | Q675H | caG | caC | 1 | 1 | AY.34.1 | 0.00051 |
S | 675 | Q675H | caG | caC | 1 | 1 | AY.36 | 0.000148 |
S | 675 | Q675H | caG | caC | 1 | 1 | AY.4.5 | 0.000107 |
S | 675 | Q675H | caG | caC | 1 | 1 | AY.5.3 | 0.000337 |
S | 675 | Q675H | caG | caT | 1 | 1 | AY.55 | 0.000917 |
S | 675 | Q675H | caG | caT | 1 | 1 | AY.60 | 0.000938 |
S | 675 | Q675H | caG | caT | 1 | 1 | AY.62 | 0.000436 |
S | 675 | Q675H | caG | caC | 1 | 1 | AY.65 | 0.000533 |
S | 675 | Q675H | caG | caC | 1 | 1 | AY.75.1 | 0.00018 |
S | 675 | Q675H | caG | caT | 1 | 1 | AY.77 | 0.001127 |
S | 675 | Q675H | caG | caT | 1 | 1 | AY.78 | 0.001541 |
S | 675 | Q675H | caG | caC | 1 | 1 | AY.92 | 0.000287 |
S | 675 | Q675H | caG | caC | 1 | 1 | AY.93 | 0.000273 |
S | 675 | Q675H | caG | caC | 1 | 1 | AY.95 | 0.000761 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.153 | 0.001095 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.185 | 0.076923 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.187 | 0.00885 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.1.203 | 0.016949 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.237 | 0.005405 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.1.263 | 0.001558 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.265 | 0.003155 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.1.273 | 0.006757 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.1.274 | 0.005051 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.284 | 0.000107 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.286 | 0.002899 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.305 | 0.003861 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.1.31 | 0.066667 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.1.320 | 0.018182 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.322 | 0.008772 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.1.329 | 0.003846 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.1.353 | 0.020833 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.368 | 0.003086 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.387 | 0.058824 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.1.409 | 0.002833 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.433 | 0.001425 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.44 | 0.00241 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.46 | 0.004367 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.47 | 0.005348 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.1.50 | 0.000679 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.1.526 | 0.003546 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.1.528 | 0.004808 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.158 | 0.02381 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.160.20 | 0.008929 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.177.3 | 0.007634 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.177.35 | 0.000691 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.177.53 | 0.002392 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.177.54 | 0.000606 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.177.56 | 0.000668 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.177.69 | 0.001484 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.177.76 | 0.002494 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.177.80 | 0.001912 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.177.89 | 0.02439 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.189 | 0.004292 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.214 | 0.003663 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.227 | 0.047619 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.229 | 0.009709 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.247 | 0.014925 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.258.11 | 0.000396 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.258.17 | 0.000104 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.260 | 0.003344 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.279 | 0.000514 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.298 | 0.002114 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.302 | 0.013333 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.320 | 0.001245 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.337 | 0.005587 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.351.5 | 0.0006 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.355 | 0.011111 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.36.31 | 0.001751 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.36.38 | 0.001642 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.366 | 0.004878 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.375 | 0.00082 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.378 | 0.006849 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.389 | 0.001002 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.397 | 0.004854 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.423 | 0.010204 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.425 | 0.002994 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.428 | 0.00102 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.439 | 0.005917 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.485 | 0.014925 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.532 | 0.006211 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.537 | 0.02 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.567 | 0.003333 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.577 | 0.000687 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.580 | 0.004065 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.610 | 0.003546 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.617.1 | 0.000129 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.618 | 0.004032 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.1.634 | 0.003425 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.1.78 | 0.008547 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.35 | 0.007812 |
S | 675 | Q675H | caG | caT | 1 | 1 | B.55 | 0.00295 |
S | 675 | Q675H | caG | caC | 1 | 1 | B.6 | 0.00091 |
S | 675 | Q675H | caG | caC | 1 | 1 | C.18 | 0.002591 |
S | 675 | Q675H | caG | caC | 1 | 1 | D.2 | 0.000075 |
S | 675 | Q675H | caG | caT | 1 | 1 | N.5 | 0.001767 |
S | 675 | Q675H | caG | caC | 1 | 1 | N.9 | 0.005952 |
S | 675 | Q675H | caG | caC | 1 | 1 | P.1.13 | 0.000898 |
S | 675 | Q675H | caG | caT | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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