CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 613 | Q613H | nonsyn | caG | caT | 35399 | 35166 | 0.993418 | 23399-23401 | |
S | 613 | Q613H | nonsyn | caG | caC | 35399 | 233 | 0.00658211 | 23399-23401 |
Details of the mutation Q613H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 613 | Q613H | caG | caT | 35166 | 35399 | All | 0.006726 |
S | 613 | Q613H | caG | caC | 233 | 35399 | All | 0.000045 |
S | 613 | Q613H | caG | caT | 12033 | 12033 | AY.27 | 0.778785 |
S | 613 | Q613H | caG | caT | 7882 | 7884 | AY.33 | 0.526344 |
S | 613 | Q613H | caG | caC | 2 | 7884 | AY.33 | 0.000134 |
S | 613 | Q613H | caG | caT | 2155 | 2174 | B.1.617.2 | 0.008114 |
S | 613 | Q613H | caG | caC | 19 | 2174 | B.1.617.2 | 0.000072 |
S | 613 | Q613H | caG | caT | 1814 | 1816 | AY.3 | 0.018043 |
S | 613 | Q613H | caG | caC | 2 | 1816 | AY.3 | 0.00002 |
S | 613 | Q613H | caG | caT | 1412 | 1412 | A.23.1 | 0.994366 |
S | 613 | Q613H | caG | caT | 983 | 1020 | B.1.1.7 | 0.00088 |
S | 613 | Q613H | caG | caC | 37 | 1020 | B.1.1.7 | 0.000033 |
S | 613 | Q613H | caG | caT | 988 | 998 | AY.43 | 0.004377 |
S | 613 | Q613H | caG | caC | 10 | 998 | AY.43 | 0.000044 |
S | 613 | Q613H | caG | caT | 850 | 854 | AY.4 | 0.001323 |
S | 613 | Q613H | caG | caC | 4 | 854 | AY.4 | 0.000006 |
S | 613 | Q613H | caG | caT | 808 | 808 | AY.5 | 0.016685 |
S | 613 | Q613H | caG | caT | 736 | 760 | AY.103 | 0.00457 |
S | 613 | Q613H | caG | caC | 24 | 760 | AY.103 | 0.000149 |
S | 613 | Q613H | caG | caT | 323 | 323 | B.1.517 | 0.137916 |
S | 613 | Q613H | caG | caT | 290 | 290 | B.1.177.7 | 0.047807 |
S | 613 | Q613H | caG | caT | 204 | 204 | AY.26 | 0.005775 |
S | 613 | Q613H | caG | caT | 194 | 196 | P.1 | 0.003056 |
S | 613 | Q613H | caG | caC | 2 | 196 | P.1 | 0.000032 |
S | 613 | Q613H | caG | caT | 185 | 186 | AY.120 | 0.006878 |
S | 613 | Q613H | caG | caC | 1 | 186 | AY.120 | 0.000037 |
S | 613 | Q613H | caG | caT | 165 | 176 | AY.44 | 0.001004 |
S | 613 | Q613H | caG | caC | 11 | 176 | AY.44 | 0.000067 |
S | 613 | Q613H | caG | caT | 172 | 172 | B.1.438.1 | 0.018449 |
S | 613 | Q613H | caG | caT | 162 | 171 | AY.25 | 0.000974 |
S | 613 | Q613H | caG | caC | 9 | 171 | AY.25 | 0.000054 |
S | 613 | Q613H | caG | caT | 128 | 167 | AY.102 | 0.003394 |
S | 613 | Q613H | caG | caC | 39 | 167 | AY.102 | 0.001034 |
S | 613 | Q613H | caG | caT | 147 | 154 | AY.20 | 0.005713 |
S | 613 | Q613H | caG | caC | 7 | 154 | AY.20 | 0.000272 |
S | 613 | Q613H | caG | caT | 149 | 150 | AY.61 | 0.015612 |
S | 613 | Q613H | caG | caC | 1 | 150 | AY.61 | 0.000105 |
S | 613 | Q613H | caG | caT | 127 | 129 | AY.9.2 | 0.004665 |
S | 613 | Q613H | caG | caC | 2 | 129 | AY.9.2 | 0.000073 |
S | 613 | Q613H | caG | caT | 115 | 115 | B.1.177 | 0.001514 |
S | 613 | Q613H | caG | caT | 112 | 112 | AY.16 | 0.042521 |
S | 613 | Q613H | caG | caT | 108 | 110 | B.1.2 | 0.000951 |
S | 613 | Q613H | caG | caC | 2 | 110 | B.1.2 | 0.000018 |
S | 613 | Q613H | caG | caT | 105 | 105 | B.1.177.27 | 0.990566 |
S | 613 | Q613H | caG | caT | 99 | 99 | AY.14 | 0.008713 |
S | 613 | Q613H | caG | caT | 97 | 97 | AY.9.1 | 0.008121 |
S | 613 | Q613H | caG | caT | 94 | 94 | A.23 | 0.989474 |
S | 613 | Q613H | caG | caT | 92 | 92 | AY.37 | 0.029077 |
S | 613 | Q613H | caG | caT | 89 | 90 | B.1 | 0.000815 |
S | 613 | Q613H | caG | caC | 1 | 90 | B.1 | 0.000009 |
S | 613 | Q613H | caG | caT | 82 | 82 | P.1.7 | 0.026181 |
S | 613 | Q613H | caG | caT | 70 | 70 | P.1.14 | 0.003346 |
S | 613 | Q613H | caG | caT | 62 | 62 | B.1.526 | 0.001457 |
S | 613 | Q613H | caG | caT | 60 | 60 | AY.75.1 | 0.010819 |
S | 613 | Q613H | caG | caT | 58 | 59 | B.1.243 | 0.004036 |
S | 613 | Q613H | caG | caC | 1 | 59 | B.1.243 | 0.00007 |
S | 613 | Q613H | caG | caT | 57 | 57 | B.1.36.29 | 0.029488 |
S | 613 | Q613H | caG | caT | 55 | 55 | B.1.604 | 0.948276 |
S | 613 | Q613H | caG | caT | 53 | 54 | AY.29 | 0.000836 |
S | 613 | Q613H | caG | caC | 1 | 54 | AY.29 | 0.000016 |
S | 613 | Q613H | caG | caT | 54 | 54 | B.1.258.17 | 0.005614 |
S | 613 | Q613H | caG | caT | 52 | 52 | AY.4.5 | 0.00559 |
S | 613 | Q613H | caG | caT | 51 | 51 | AY.6 | 0.002098 |
S | 613 | Q613H | caG | caT | 49 | 49 | B.1.628 | 0.017266 |
S | 613 | Q613H | caG | caT | 48 | 48 | AY.41 | 0.014109 |
S | 613 | Q613H | caG | caT | 46 | 46 | AY.75 | 0.002577 |
S | 613 | Q613H | caG | caT | 44 | 44 | AY.106 | 0.014735 |
S | 613 | Q613H | caG | caT | 42 | 42 | AY.67 | 0.019499 |
S | 613 | Q613H | caG | caC | 42 | 42 | B.1.1.318 | 0.012674 |
S | 613 | Q613H | caG | caT | 40 | 40 | AY.46 | 0.004163 |
S | 613 | Q613H | caG | caT | 35 | 35 | AY.45 | 0.004259 |
S | 613 | Q613H | caG | caT | 34 | 34 | AY.39 | 0.00084 |
S | 613 | Q613H | caG | caT | 33 | 33 | AY.23 | 0.002302 |
S | 613 | Q613H | caG | caT | 33 | 33 | B.1.575 | 0.010012 |
S | 613 | Q613H | caG | caT | 31 | 31 | AY.9 | 0.002095 |
S | 613 | Q613H | caG | caT | 28 | 29 | B.1.1 | 0.000508 |
S | 613 | Q613H | caG | caC | 1 | 29 | B.1.1 | 0.000018 |
S | 613 | Q613H | caG | caT | 28 | 28 | AY.47 | 0.000871 |
S | 613 | Q613H | caG | caT | 28 | 28 | AY.59 | 0.014831 |
S | 613 | Q613H | caG | caT | 26 | 26 | AY.42 | 0.001046 |
S | 613 | Q613H | caG | caT | 25 | 25 | AY.100 | 0.00115 |
S | 613 | Q613H | caG | caT | 25 | 25 | AY.46.6 | 0.001805 |
S | 613 | Q613H | caG | caT | 25 | 25 | AY.98.1 | 0.001211 |
S | 613 | Q613H | caG | caT | 21 | 24 | AY.101 | 0.010299 |
S | 613 | Q613H | caG | caC | 3 | 24 | AY.101 | 0.001471 |
S | 613 | Q613H | caG | caT | 24 | 24 | AY.119 | 0.000847 |
S | 613 | Q613H | caG | caT | 23 | 23 | A | 0.008901 |
S | 613 | Q613H | caG | caT | 22 | 23 | AY.4.2 | 0.000477 |
S | 613 | Q613H | caG | caC | 1 | 23 | AY.4.2 | 0.000022 |
S | 613 | Q613H | caG | caT | 22 | 22 | B.1.1.398 | 0.070968 |
S | 613 | Q613H | caG | caT | 22 | 22 | B.1.429 | 0.000518 |
S | 613 | Q613H | caG | caT | 21 | 21 | B.1.1.351 | 0.058659 |
S | 613 | Q613H | caG | caT | 20 | 20 | AY.110 | 0.002254 |
S | 613 | Q613H | caG | caT | 19 | 19 | AY.34 | 0.001842 |
S | 613 | Q613H | caG | caT | 19 | 19 | B.1.351 | 0.000565 |
S | 613 | Q613H | caG | caT | 19 | 19 | B.1.596 | 0.001656 |
S | 613 | Q613H | caG | caT | 17 | 18 | AY.121 | 0.0023 |
S | 613 | Q613H | caG | caC | 1 | 18 | AY.121 | 0.000135 |
S | 613 | Q613H | caG | caT | 18 | 18 | AY.69 | 0.00336 |
S | 613 | Q613H | caG | caT | 18 | 18 | AY.73 | 0.011976 |
S | 613 | Q613H | caG | caT | 17 | 17 | B.1.177.82 | 0.008115 |
S | 613 | Q613H | caG | caT | 16 | 16 | AY.54 | 0.001526 |
S | 613 | Q613H | caG | caT | 15 | 15 | B.1.621 | 0.001328 |
S | 613 | Q613H | caG | caT | 14 | 14 | AY.116 | 0.004015 |
S | 613 | Q613H | caG | caT | 14 | 14 | AY.117 | 0.001183 |
S | 613 | Q613H | caG | caT | 14 | 14 | B | 0.001789 |
S | 613 | Q613H | caG | caT | 14 | 14 | B.1.1.362 | 0.078652 |
S | 613 | Q613H | caG | caT | 13 | 13 | AY.111 | 0.002381 |
S | 613 | Q613H | caG | caT | 13 | 13 | AY.55 | 0.011927 |
S | 613 | Q613H | caG | caT | 13 | 13 | B.1.1.285 | 0.084967 |
S | 613 | Q613H | caG | caT | 13 | 13 | B.1.177.44 | 0.006746 |
S | 613 | Q613H | caG | caT | 13 | 13 | B.1.258 | 0.000865 |
S | 613 | Q613H | caG | caT | 12 | 12 | AY.46.4 | 0.001974 |
S | 613 | Q613H | caG | caT | 11 | 12 | AY.71 | 0.005226 |
S | 613 | Q613H | caG | caC | 1 | 12 | AY.71 | 0.000475 |
S | 613 | Q613H | caG | caT | 11 | 11 | B.1.240 | 0.002371 |
S | 613 | Q613H | caG | caT | 11 | 11 | B.1.36 | 0.001605 |
S | 613 | Q613H | caG | caT | 10 | 10 | AY.99.2 | 0.000922 |
S | 613 | Q613H | caG | caT | 9 | 9 | AY.16.1 | 0.004229 |
S | 613 | Q613H | caG | caT | 7 | 9 | AY.36 | 0.001037 |
S | 613 | Q613H | caG | caC | 2 | 9 | AY.36 | 0.000296 |
S | 613 | Q613H | caG | caT | 9 | 9 | AY.84 | 0.003937 |
S | 613 | Q613H | caG | caT | 9 | 9 | B.1.1.63 | 0.003472 |
S | 613 | Q613H | caG | caT | 7 | 9 | C.37 | 0.000812 |
S | 613 | Q613H | caG | caC | 2 | 9 | C.37 | 0.000232 |
S | 613 | Q613H | caG | caT | 8 | 8 | AY.62 | 0.003486 |
S | 613 | Q613H | caG | caT | 8 | 8 | AY.70 | 0.001668 |
S | 613 | Q613H | caG | caT | 8 | 8 | AY.98 | 0.000632 |
S | 613 | Q613H | caG | caT | 8 | 8 | B.1.1.316 | 0.007401 |
S | 613 | Q613H | caG | caT | 8 | 8 | B.1.160 | 0.00025 |
S | 613 | Q613H | caG | caT | 8 | 8 | B.1.160.7 | 0.016632 |
S | 613 | Q613H | caG | caT | 7 | 7 | AY.105 | 0.004502 |
S | 613 | Q613H | caG | caT | 7 | 7 | AY.113 | 0.000997 |
S | 613 | Q613H | caG | caT | 7 | 7 | AY.118 | 0.000439 |
S | 613 | Q613H | caG | caT | 7 | 7 | AY.120.1 | 0.002247 |
S | 613 | Q613H | caG | caT | 7 | 7 | AY.4.2.1 | 0.001043 |
S | 613 | Q613H | caG | caT | 7 | 7 | AY.5.4 | 0.001937 |
S | 613 | Q613H | caG | caT | 7 | 7 | AY.51 | 0.006364 |
S | 613 | Q613H | caG | caT | 7 | 7 | B.1.1.214 | 0.000388 |
S | 613 | Q613H | caG | caT | 7 | 7 | B.1.1.369 | 0.003124 |
S | 613 | Q613H | caG | caT | 7 | 7 | B.1.619.1 | 0.00449 |
S | 613 | Q613H | caG | caT | 7 | 7 | B.1.620 | 0.006623 |
S | 613 | Q613H | caG | caT | 7 | 7 | B.1.637 | 0.000512 |
S | 613 | Q613H | caG | caT | 7 | 7 | P.1.15 | 0.001626 |
S | 613 | Q613H | caG | caT | 6 | 6 | AY.108 | 0.006615 |
S | 613 | Q613H | caG | caT | 6 | 6 | AY.72 | 0.008163 |
S | 613 | Q613H | caG | caT | 6 | 6 | AY.91 | 0.004383 |
S | 613 | Q613H | caG | caT | 6 | 6 | AY.92 | 0.001724 |
S | 613 | Q613H | caG | caT | 6 | 6 | B.1.214.3 | 0.042857 |
S | 613 | Q613H | caG | caT | 5 | 6 | B.1.221 | 0.000355 |
S | 613 | Q613H | caG | caC | 1 | 6 | B.1.221 | 0.000071 |
S | 613 | Q613H | caG | caT | 6 | 6 | B.1.311 | 0.001647 |
S | 613 | Q613H | caG | caT | 6 | 6 | B.1.595 | 0.001566 |
S | 613 | Q613H | caG | caT | 5 | 5 | AY.11 | 0.006693 |
S | 613 | Q613H | caG | caT | 5 | 5 | AY.24 | 0.002155 |
S | 613 | Q613H | caG | caT | 5 | 5 | AY.93 | 0.001365 |
S | 613 | Q613H | caG | caT | 5 | 5 | B.1.1.28 | 0.001556 |
S | 613 | Q613H | caG | caT | 5 | 5 | B.1.177.46 | 0.004591 |
S | 613 | Q613H | caG | caT | 5 | 5 | B.1.177.56 | 0.003338 |
S | 613 | Q613H | caG | caT | 5 | 5 | B.1.177.86 | 0.000917 |
S | 613 | Q613H | caG | caT | 5 | 5 | C.23 | 0.02907 |
S | 613 | Q613H | caG | caT | 5 | 5 | P.2 | 0.000933 |
S | 613 | Q613H | caG | caT | 4 | 4 | AY.114 | 0.000924 |
S | 613 | Q613H | caG | caT | 4 | 4 | AY.120.2.1 | 0.001993 |
S | 613 | Q613H | caG | caT | 4 | 4 | AY.13 | 0.000644 |
S | 613 | Q613H | caG | caT | 4 | 4 | AY.28 | 0.007561 |
S | 613 | Q613H | caG | caT | 4 | 4 | AY.3.1 | 0.000341 |
S | 613 | Q613H | caG | caT | 4 | 4 | AY.38 | 0.001997 |
S | 613 | Q613H | caG | caT | 4 | 4 | AY.68 | 0.001095 |
S | 613 | Q613H | caG | caT | 4 | 4 | AY.7.1 | 0.000451 |
S | 613 | Q613H | caG | caT | 4 | 4 | B.1.1.216 | 0.003562 |
S | 613 | Q613H | caG | caT | 4 | 4 | B.1.1.269 | 0.005413 |
S | 613 | Q613H | caG | caT | 4 | 4 | B.1.1.291 | 0.00297 |
S | 613 | Q613H | caG | caT | 4 | 4 | B.1.1.37 | 0.000771 |
S | 613 | Q613H | caG | caT | 4 | 4 | B.1.1.519 | 0.000159 |
S | 613 | Q613H | caG | caT | 4 | 4 | B.1.195 | 0.020101 |
S | 613 | Q613H | caG | caT | 4 | 4 | B.1.234 | 0.000528 |
S | 613 | Q613H | caG | caT | 4 | 4 | B.1.427 | 0.000202 |
S | 613 | Q613H | caG | caT | 4 | 4 | B.1.428 | 0.004082 |
S | 613 | Q613H | caG | caT | 4 | 4 | B.1.565 | 0.003241 |
S | 613 | Q613H | caG | caT | 4 | 4 | B.1.582 | 0.001963 |
S | 613 | Q613H | caG | caT | 4 | 4 | B.1.627 | 0.008081 |
S | 613 | Q613H | caG | caT | 4 | 4 | P.1.10 | 0.001078 |
S | 613 | Q613H | caG | caT | 4 | 4 | Q.1 | 0.000505 |
S | 613 | Q613H | caG | caT | 3 | 3 | AY.10 | 0.00159 |
S | 613 | Q613H | caG | caT | 3 | 3 | AY.32 | 0.001597 |
S | 613 | Q613H | caG | caT | 3 | 3 | AY.5.3 | 0.001012 |
S | 613 | Q613H | caG | caT | 3 | 3 | AY.7 | 0.000588 |
S | 613 | Q613H | caG | caT | 3 | 3 | AY.74 | 0.000347 |
S | 613 | Q613H | caG | caT | 3 | 3 | AY.77 | 0.003382 |
S | 613 | Q613H | caG | caT | 3 | 3 | AY.88 | 0.002653 |
S | 613 | Q613H | caG | caT | 3 | 3 | B.1.1.33 | 0.001263 |
S | 613 | Q613H | caG | caT | 3 | 3 | B.1.1.348 | 0.002389 |
S | 613 | Q613H | caG | caT | 3 | 3 | B.1.1.50 | 0.002037 |
S | 613 | Q613H | caG | caT | 3 | 3 | B.1.320 | 0.003736 |
S | 613 | Q613H | caG | caT | 3 | 3 | B.1.36.1 | 0.003421 |
S | 613 | Q613H | caG | caT | 3 | 3 | B.1.36.17 | 0.001482 |
S | 613 | Q613H | caG | caT | 3 | 3 | B.1.465 | 0.011407 |
S | 613 | Q613H | caG | caT | 3 | 3 | B.1.466.2 | 0.001174 |
S | 613 | Q613H | caG | caT | 3 | 3 | B.1.470 | 0.004213 |
S | 613 | Q613H | caG | caT | 3 | 3 | B.1.617.1 | 0.000387 |
S | 613 | Q613H | caG | caT | 3 | 3 | B.1.9.4 | 0.018405 |
S | 613 | Q613H | caG | caT | 3 | 3 | P.1.2 | 0.003468 |
S | 613 | Q613H | caG | caT | 3 | 3 | Q.8 | 0.000495 |
S | 613 | Q613H | caG | caT | 2 | 2 | A.25 | 0.036364 |
S | 613 | Q613H | caG | caT | 2 | 2 | AU.2 | 0.004843 |
S | 613 | Q613H | caG | caT | 2 | 2 | AY.109 | 0.001479 |
S | 613 | Q613H | caG | caT | 2 | 2 | AY.21 | 0.003795 |
S | 613 | Q613H | caG | caT | 2 | 2 | AY.34.1 | 0.00102 |
S | 613 | Q613H | caG | caT | 2 | 2 | AY.35 | 0.000466 |
S | 613 | Q613H | caG | caT | 2 | 2 | AY.39.1 | 0.000079 |
S | 613 | Q613H | caG | caT | 2 | 2 | AY.46.2 | 0.001271 |
S | 613 | Q613H | caG | caT | 2 | 2 | AY.81 | 0.003984 |
S | 613 | Q613H | caG | caT | 2 | 2 | AY.87 | 0.001665 |
S | 613 | Q613H | caG | caT | 2 | 2 | AY.96 | 0.004149 |
S | 613 | Q613H | caG | caT | 2 | 2 | AZ.2 | 0.001642 |
S | 613 | Q613H | caG | caT | 2 | 2 | B.1.1.10 | 0.00223 |
S | 613 | Q613H | caG | caT | 2 | 2 | B.1.1.231 | 0.006192 |
S | 613 | Q613H | caG | caT | 2 | 2 | B.1.1.448 | 0.004065 |
S | 613 | Q613H | caG | caT | 2 | 2 | B.1.1.47 | 0.010695 |
S | 613 | Q613H | caG | caT | 2 | 2 | B.1.177.33 | 0.003289 |
S | 613 | Q613H | caG | caT | 2 | 2 | B.1.177.75 | 0.002081 |
S | 613 | Q613H | caG | caT | 2 | 2 | B.1.305 | 0.004301 |
S | 613 | Q613H | caG | caT | 2 | 2 | B.1.36.18 | 0.00084 |
S | 613 | Q613H | caG | caT | 2 | 2 | B.1.369 | 0.00057 |
S | 613 | Q613H | caG | caT | 2 | 2 | B.1.456 | 0.006536 |
S | 613 | Q613H | caG | caT | 2 | 2 | B.1.473 | 0.038462 |
S | 613 | Q613H | caG | caT | 2 | 2 | B.1.609 | 0.000959 |
S | 613 | Q613H | caG | caT | 2 | 2 | B.6 | 0.00182 |
S | 613 | Q613H | caG | caT | 2 | 2 | N.9 | 0.011905 |
S | 613 | Q613H | caG | caT | 1 | 1 | A.11 | 0.058824 |
S | 613 | Q613H | caG | caC | 1 | 1 | A.2 | 0.000662 |
S | 613 | Q613H | caG | caT | 1 | 1 | A.2.5 | 0.000499 |
S | 613 | Q613H | caG | caC | 1 | 1 | A.5 | 0.001923 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.1 | 0.000396 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.107 | 0.000466 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.2 | 0.000356 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.29.1 | 0.000221 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.4.3 | 0.000842 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.4.4 | 0.000409 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.40 | 0.000964 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.46.1 | 0.001027 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.48 | 0.000465 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.53 | 0.000288 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.56 | 0.001605 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.58 | 0.000907 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.60 | 0.000938 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.63 | 0.000387 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.8 | 0.000606 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.83 | 0.001724 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.85 | 0.000427 |
S | 613 | Q613H | caG | caT | 1 | 1 | AY.94 | 0.000443 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.1 | 0.000327 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.176 | 0.000439 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.220 | 0.001859 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.25 | 0.000569 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.263 | 0.001558 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.279 | 0.001121 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.305 | 0.003861 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.306 | 0.000438 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.311 | 0.000358 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.333 | 0.001076 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.39 | 0.00051 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.409 | 0.002833 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.41 | 0.006329 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.434 | 0.000349 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.1.486 | 0.001577 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.160.15 | 0.00495 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.160.26 | 0.002421 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.177.15 | 0.000631 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.177.43 | 0.001477 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.177.5 | 0.001242 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.177.50 | 0.004695 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.177.54 | 0.000606 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.177.57 | 0.000281 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.177.60 | 0.000218 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.177.81 | 0.000189 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.177.84 | 0.006667 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.206 | 0.000816 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.210 | 0.002132 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.232 | 0.000537 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.239 | 0.001221 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.258.2 | 0.004505 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.258.21 | 0.007752 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.329 | 0.000608 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.335 | 0.010309 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.36.10 | 0.004785 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.36.22 | 0.001208 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.36.28 | 0.005747 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.36.36 | 0.000602 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.36.8 | 0.001 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.362 | 0.001541 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.366 | 0.004878 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.367 | 0.000792 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.380 | 0.006623 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.393 | 0.028571 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.397 | 0.004854 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.399 | 0.001934 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.400 | 0.000429 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.416.1 | 0.001563 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.453 | 0.003236 |
S | 613 | Q613H | caG | caC | 1 | 1 | B.1.459 | 0.004082 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.466.1 | 0.007194 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.468 | 0.005714 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.499 | 0.00105 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.503 | 0.002488 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.521 | 0.004975 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.524 | 0.001406 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.525 | 0.000113 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.577 | 0.000687 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.589 | 0.007576 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.596.1 | 0.009346 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.625 | 0.002353 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.629 | 0.013333 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.1.630 | 0.005236 |
S | 613 | Q613H | caG | caC | 1 | 1 | B.3.1 | 0.001658 |
S | 613 | Q613H | caG | caT | 1 | 1 | B.6.6 | 0.000889 |
S | 613 | Q613H | caG | caT | 1 | 1 | C.16 | 0.00106 |
S | 613 | Q613H | caG | caT | 1 | 1 | C.18 | 0.002591 |
S | 613 | Q613H | caG | caT | 1 | 1 | C.26 | 0.007353 |
S | 613 | Q613H | caG | caT | 1 | 1 | C.35 | 0.000774 |
S | 613 | Q613H | caG | caT | 1 | 1 | C.36 | 0.000911 |
S | 613 | Q613H | caG | caT | 1 | 1 | C.36.3 | 0.000567 |
S | 613 | Q613H | caG | caT | 1 | 1 | L.1 | 0.001905 |
S | 613 | Q613H | caG | caT | 1 | 1 | P.1.1 | 0.000318 |
S | 613 | Q613H | caG | caT | 1 | 1 | P.1.12 | 0.000484 |
S | 613 | Q613H | caG | caT | 1 | 1 | P.1.17 | 0.000162 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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