CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = Q1208H

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1208Q1208HnonsyncaGcaT267926720.99738725184-25186
S1208Q1208HnonsyncaGcaC267970.0026129225184-25186

Details of the mutation Q1208H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1208Q1208HcaGcaT26722679All0.000511
S1208Q1208HcaGcaC72679All0.000001
S1208Q1208HcaGcaT574575B.1.1.70.000514
S1208Q1208HcaGcaC1575B.1.1.70.000001
S1208Q1208HcaGcaT254254AY.9.20.009329
S1208Q1208HcaGcaT238239AY.40.00037
S1208Q1208HcaGcaC1239AY.40.000002
S1208Q1208HcaGcaT206206B.1.1.3180.062161
S1208Q1208HcaGcaT9898B.1.617.20.000369
S1208Q1208HcaGcaT9696B.1.20.000845
S1208Q1208HcaGcaT7777AY.440.000469
S1208Q1208HcaGcaT7272AY.1030.000447
S1208Q1208HcaGcaT6060AY.250.000361
S1208Q1208HcaGcaT5959B.1.1.550.766234
S1208Q1208HcaGcaT4949B.1.5260.001152
S1208Q1208HcaGcaT4848AY.4.20.001041
S1208Q1208HcaGcaT4848B.10.00044
S1208Q1208HcaGcaT4242AY.430.000186
S1208Q1208HcaGcaT4040B.1.1770.000527
S1208Q1208HcaGcaT3434AY.200.001321
S1208Q1208HcaGcaT2930AY.1020.000769
S1208Q1208HcaGcaC130AY.1020.000027
S1208Q1208HcaGcaT2929B.1.2580.00193
S1208Q1208HcaGcaT2626AY.30.000259
S1208Q1208HcaGcaT2626AY.9.10.002177
S1208Q1208HcaGcaT2526B.1.10.000454
S1208Q1208HcaGcaC126B.1.10.000018
S1208Q1208HcaGcaT2626B.1.1.4511
S1208Q1208HcaGcaT2424AY.390.000593
S1208Q1208HcaGcaT1515B.1.1.5190.000596
S1208Q1208HcaGcaT1515B.1.3510.000446
S1208Q1208HcaGcaT1415P.10.000221
S1208Q1208HcaGcaC115P.10.000016
S1208Q1208HcaGcaT1414AY.98.10.000678
S1208Q1208HcaGcaT1414B.1.5250.001584
S1208Q1208HcaGcaT1212B.1.2430.000835
S1208Q1208HcaGcaT1212B.1.4330.038339
S1208Q1208HcaGcaT1111AY.260.000311
S1208Q1208HcaGcaT1111B.1.1.3980.035484
S1208Q1208HcaGcaT1111B.1.3800.072848
S1208Q1208HcaGcaT1010B.1.5960.000871
S1208Q1208HcaGcaT99AY.330.000601
S1208Q1208HcaGcaT99B.1.3490.006433
S1208Q1208HcaGcaT99P.1.170.001456
S1208Q1208HcaGcaT88AY.1130.001139
S1208Q1208HcaGcaT88B.1.6200.007569
S1208Q1208HcaGcaT77AY.290.00011
S1208Q1208HcaGcaT77AY.3.10.000597
S1208Q1208HcaGcaT77AY.420.000282
S1208Q1208HcaGcaT77AY.60.000288
S1208Q1208HcaGcaT77AY.610.000733
S1208Q1208HcaGcaT77B.1.1.3820.25
S1208Q1208HcaGcaT77B.1.1.4340.00244
S1208Q1208HcaGcaT77B.1.2210.000497
S1208Q1208HcaGcaT77B.1.4290.000165
S1208Q1208HcaGcaT66AY.1190.000212
S1208Q1208HcaGcaT66AY.160.002278
S1208Q1208HcaGcaT66AY.280.011342
S1208Q1208HcaGcaT66B.1.36.290.003104
S1208Q1208HcaGcaT55B.1.1.3060.002192
S1208Q1208HcaGcaT55B.1.466.20.001956
S1208Q1208HcaGcaT55B.1.617.10.000645
S1208Q1208HcaGcaT55C.370.00058
S1208Q1208HcaGcaT55Q.80.000825
S1208Q1208HcaGcaT44AE.80.001956
S1208Q1208HcaGcaT44AY.1000.000184
S1208Q1208HcaGcaT44AY.46.40.000658
S1208Q1208HcaGcaT44AY.470.000124
S1208Q1208HcaGcaT44AY.7.10.000451
S1208Q1208HcaGcaT44AY.750.000224
S1208Q1208HcaGcaT44B.1.1.5070.034783
S1208Q1208HcaGcaT44D.20.0003
S1208Q1208HcaGcaT44P.1.150.000929
S1208Q1208HcaGcaT44P.20.000747
S1208Q1208HcaGcaT33AY.1060.001005
S1208Q1208HcaGcaT33AY.1200.000112
S1208Q1208HcaGcaT33AY.1210.000406
S1208Q1208HcaGcaT33AY.140.000264
S1208Q1208HcaGcaT33AY.270.000194
S1208Q1208HcaGcaT33AY.320.001597
S1208Q1208HcaGcaT33AY.4.30.002525
S1208Q1208HcaGcaT33AY.46.50.000595
S1208Q1208HcaGcaT33AY.46.60.000217
S1208Q1208HcaGcaT33AY.50.000062
S1208Q1208HcaGcaT33B.1.360.000438
S1208Q1208HcaGcaT33B.1.617.30.008955
S1208Q1208HcaGcaT23P.1.140.000096
S1208Q1208HcaGcaC13P.1.140.000048
S1208Q1208HcaGcaT22AY.1080.002205
S1208Q1208HcaGcaT22AY.230.000139
S1208Q1208HcaGcaT22AY.380.000999
S1208Q1208HcaGcaT22AY.450.000243
S1208Q1208HcaGcaT22AY.460.000208
S1208Q1208HcaGcaT22AY.550.001835
S1208Q1208HcaGcaT22AY.590.001059
S1208Q1208HcaGcaT22AY.75.10.000361
S1208Q1208HcaGcaT22AY.820.002714
S1208Q1208HcaGcaT22AY.980.000158
S1208Q1208HcaGcaT22B.1.1.2140.000111
S1208Q1208HcaGcaT22B.1.1.2650.006309
S1208Q1208HcaGcaT22B.1.1.2980.001724
S1208Q1208HcaGcaT22B.1.1.3160.00185
S1208Q1208HcaGcaT22B.1.177.160.001329
S1208Q1208HcaGcaT22B.1.3240.00321
S1208Q1208HcaGcaT22B.1.36.10.002281
S1208Q1208HcaGcaT22B.1.438.10.000215
S1208Q1208HcaGcaT22B.1.5950.000522
S1208Q1208HcaGcaT22B.1.6040.034483
S1208Q1208HcaGcaT22B.1.6210.000177
S1208Q1208HcaGcaT22B.1.6230.001073
S1208Q1208HcaGcaT22C.1.20.008511
S1208Q1208HcaGcaT22P.1.70.000639
S1208Q1208HcaGcaT11A0.000387
S1208Q1208HcaGcaT11A.10.000282
S1208Q1208HcaGcaT11AY.10.000396
S1208Q1208HcaGcaT11AY.1050.000643
S1208Q1208HcaGcaT11AY.1090.00074
S1208Q1208HcaGcaT11AY.1150.005208
S1208Q1208HcaGcaT11AY.1170.000085
S1208Q1208HcaGcaT11AY.1180.000063
S1208Q1208HcaGcaC11AY.120.2.10.000498
S1208Q1208HcaGcaT11AY.130.000161
S1208Q1208HcaGcaT11AY.20.000356
S1208Q1208HcaGcaT11AY.240.000431
S1208Q1208HcaGcaT11AY.34.10.00051
S1208Q1208HcaGcaT11AY.360.000148
S1208Q1208HcaGcaT11AY.39.10.00004
S1208Q1208HcaGcaT11AY.4.2.10.000149
S1208Q1208HcaGcaT11AY.4.50.000107
S1208Q1208HcaGcaT11AY.490.003195
S1208Q1208HcaGcaT11AY.5.40.000277
S1208Q1208HcaGcaT11AY.510.000909
S1208Q1208HcaGcaT11AY.570.000656
S1208Q1208HcaGcaT11AY.580.000907
S1208Q1208HcaGcaT11AY.620.000436
S1208Q1208HcaGcaT11AY.690.000187
S1208Q1208HcaGcaT11AY.7.20.000559
S1208Q1208HcaGcaT11AY.890.004902
S1208Q1208HcaGcaT11AY.920.000287
S1208Q1208HcaGcaT11AY.930.000273
S1208Q1208HcaGcaT11AY.950.000761
S1208Q1208HcaGcaT11AY.99.20.000092
S1208Q1208HcaGcaT11AZ.20.000821
S1208Q1208HcaGcaT11B.1.1.1630.007634
S1208Q1208HcaGcaT11B.1.1.1920.002309
S1208Q1208HcaGcaT11B.1.1.2190.005
S1208Q1208HcaGcaT11B.1.1.2200.001859
S1208Q1208HcaGcaT11B.1.1.2220.000204
S1208Q1208HcaGcaT11B.1.1.2550.00303
S1208Q1208HcaGcaT11B.1.1.2580.003257
S1208Q1208HcaGcaT11B.1.1.2660.012195
S1208Q1208HcaGcaT11B.1.1.2750.011236
S1208Q1208HcaGcaT11B.1.1.280.000311
S1208Q1208HcaGcaT11B.1.1.2840.000107
S1208Q1208HcaGcaT11B.1.1.3260.001761
S1208Q1208HcaGcaT11B.1.1.390.00051
S1208Q1208HcaGcaT11B.1.1.4320.001266
S1208Q1208HcaGcaT11B.1.1390.000733
S1208Q1208HcaGcaT11B.1.1600.000031
S1208Q1208HcaGcaT11B.1.160.240.004425
S1208Q1208HcaGcaT11B.1.177.330.001645
S1208Q1208HcaGcaT11B.1.177.450.000381
S1208Q1208HcaGcaT11B.1.177.600.000218
S1208Q1208HcaGcaT11B.1.2100.002132
S1208Q1208HcaGcaT11B.1.2320.000537
S1208Q1208HcaGcaT11B.1.258.170.000104
S1208Q1208HcaGcaT11B.1.2600.003344
S1208Q1208HcaGcaT11B.1.36.80.001
S1208Q1208HcaGcaT11B.1.3620.001541
S1208Q1208HcaGcaT11B.1.3690.000285
S1208Q1208HcaGcaT11B.1.4000.000429
S1208Q1208HcaGcaT11B.1.4050.012346
S1208Q1208HcaGcaT11B.1.4090.000781
S1208Q1208HcaGcaT11B.1.4160.001269
S1208Q1208HcaGcaT11B.1.4780.011765
S1208Q1208HcaGcaT11B.1.5240.001406
S1208Q1208HcaGcaT11B.1.5380.008065
S1208Q1208HcaGcaT11B.1.5640.000426
S1208Q1208HcaGcaT11B.1.5760.000907
S1208Q1208HcaGcaT11B.1.5870.001898
S1208Q1208HcaGcaT11B.1.6100.003546
S1208Q1208HcaGcaT11B.3.10.001658
S1208Q1208HcaGcaT11B.390.002331
S1208Q1208HcaGcaT11B.400.000364
S1208Q1208HcaGcaT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.