CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 715 | P715P | syn | ccC | ccT | 4937 | 4779 | 0.967997 | 23705-23707 | |
S | 715 | P715P | syn | ccC | ccA | 4937 | 130 | 0.0263318 | 23705-23707 | |
S | 715 | P715P | syn | ccC | ccG | 4937 | 28 | 0.00567146 | 23705-23707 |
Details of the mutation P715P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 715 | P715P | ccC | ccT | 4779 | 4937 | All | 0.000914 |
S | 715 | P715P | ccC | ccA | 130 | 4937 | All | 0.000025 |
S | 715 | P715P | ccC | ccG | 28 | 4937 | All | 0.000005 |
S | 715 | P715P | ccC | ccT | 645 | 645 | B.1.1.464 | 0.949926 |
S | 715 | P715P | ccC | ccT | 576 | 641 | B.1.1.7 | 0.000516 |
S | 715 | P715P | ccC | ccA | 55 | 641 | B.1.1.7 | 0.000049 |
S | 715 | P715P | ccC | ccG | 10 | 641 | B.1.1.7 | 0.000009 |
S | 715 | P715P | ccC | ccT | 500 | 507 | AY.4 | 0.000778 |
S | 715 | P715P | ccC | ccA | 7 | 507 | AY.4 | 0.000011 |
S | 715 | P715P | ccC | ccT | 327 | 327 | AW.1 | 0.996951 |
S | 715 | P715P | ccC | ccT | 293 | 293 | AY.101 | 0.143698 |
S | 715 | P715P | ccC | ccT | 283 | 283 | D.2 | 0.021237 |
S | 715 | P715P | ccC | ccT | 279 | 279 | B.29 | 0.978947 |
S | 715 | P715P | ccC | ccT | 175 | 183 | B.1.617.2 | 0.000659 |
S | 715 | P715P | ccC | ccG | 4 | 183 | B.1.617.2 | 0.000015 |
S | 715 | P715P | ccC | ccA | 4 | 183 | B.1.617.2 | 0.000015 |
S | 715 | P715P | ccC | ccT | 167 | 168 | AY.25 | 0.001004 |
S | 715 | P715P | ccC | ccA | 1 | 168 | AY.25 | 0.000006 |
S | 715 | P715P | ccC | ccT | 130 | 141 | AY.3 | 0.001293 |
S | 715 | P715P | ccC | ccG | 7 | 141 | AY.3 | 0.00007 |
S | 715 | P715P | ccC | ccA | 4 | 141 | AY.3 | 0.00004 |
S | 715 | P715P | ccC | ccT | 122 | 128 | B.1 | 0.001117 |
S | 715 | P715P | ccC | ccA | 5 | 128 | B.1 | 0.000046 |
S | 715 | P715P | ccC | ccG | 1 | 128 | B.1 | 0.000009 |
S | 715 | P715P | ccC | ccT | 62 | 69 | AY.44 | 0.000377 |
S | 715 | P715P | ccC | ccA | 7 | 69 | AY.44 | 0.000043 |
S | 715 | P715P | ccC | ccT | 68 | 68 | AY.103 | 0.000422 |
S | 715 | P715P | ccC | ccT | 64 | 64 | B.1.1.70 | 0.021828 |
S | 715 | P715P | ccC | ccT | 62 | 62 | AY.43 | 0.000275 |
S | 715 | P715P | ccC | ccT | 62 | 62 | B.1.2 | 0.000546 |
S | 715 | P715P | ccC | ccT | 61 | 61 | B.1.1 | 0.001107 |
S | 715 | P715P | ccC | ccT | 56 | 61 | B.1.177 | 0.000737 |
S | 715 | P715P | ccC | ccA | 4 | 61 | B.1.177 | 0.000053 |
S | 715 | P715P | ccC | ccG | 1 | 61 | B.1.177 | 0.000013 |
S | 715 | P715P | ccC | ccT | 59 | 61 | B.1.429 | 0.001388 |
S | 715 | P715P | ccC | ccG | 1 | 61 | B.1.429 | 0.000024 |
S | 715 | P715P | ccC | ccA | 1 | 61 | B.1.429 | 0.000024 |
S | 715 | P715P | ccC | ccT | 49 | 51 | B.1.160 | 0.001528 |
S | 715 | P715P | ccC | ccA | 2 | 51 | B.1.160 | 0.000062 |
S | 715 | P715P | ccC | ccT | 36 | 36 | B.1.526 | 0.000846 |
S | 715 | P715P | ccC | ccT | 34 | 36 | P.1 | 0.000536 |
S | 715 | P715P | ccC | ccA | 2 | 36 | P.1 | 0.000032 |
S | 715 | P715P | ccC | ccT | 32 | 32 | AY.106 | 0.010717 |
S | 715 | P715P | ccC | ccT | 29 | 29 | AY.20 | 0.001127 |
S | 715 | P715P | ccC | ccT | 26 | 26 | AY.102 | 0.000689 |
S | 715 | P715P | ccC | ccT | 24 | 24 | Q.3 | 0.003481 |
S | 715 | P715P | ccC | ccT | 22 | 22 | AY.4.2 | 0.000477 |
S | 715 | P715P | ccC | ccT | 19 | 19 | AY.100 | 0.000874 |
S | 715 | P715P | ccC | ccT | 18 | 18 | AY.9.1 | 0.001507 |
S | 715 | P715P | ccC | ccT | 16 | 17 | B.1.351 | 0.000476 |
S | 715 | P715P | ccC | ccA | 1 | 17 | B.1.351 | 0.00003 |
S | 715 | P715P | ccC | ccT | 16 | 16 | AY.3.1 | 0.001364 |
S | 715 | P715P | ccC | ccT | 16 | 16 | C.18 | 0.041451 |
S | 715 | P715P | ccC | ccT | 15 | 15 | B.1.436 | 0.015432 |
S | 715 | P715P | ccC | ccT | 13 | 14 | AY.9.2 | 0.000477 |
S | 715 | P715P | ccC | ccG | 1 | 14 | AY.9.2 | 0.000037 |
S | 715 | P715P | ccC | ccT | 14 | 14 | B.1.221 | 0.000994 |
S | 715 | P715P | ccC | ccT | 14 | 14 | B.1.369 | 0.003993 |
S | 715 | P715P | ccC | ccT | 13 | 13 | AY.118 | 0.000814 |
S | 715 | P715P | ccC | ccT | 10 | 12 | AY.39 | 0.000247 |
S | 715 | P715P | ccC | ccA | 2 | 12 | AY.39 | 0.000049 |
S | 715 | P715P | ccC | ccT | 12 | 12 | B.1.575 | 0.003641 |
S | 715 | P715P | ccC | ccT | 11 | 11 | B.1.258 | 0.000732 |
S | 715 | P715P | ccC | ccT | 10 | 10 | AY.93 | 0.002731 |
S | 715 | P715P | ccC | ccT | 9 | 9 | AY.121 | 0.001218 |
S | 715 | P715P | ccC | ccT | 9 | 9 | B | 0.00115 |
S | 715 | P715P | ccC | ccT | 8 | 8 | AY.117 | 0.000676 |
S | 715 | P715P | ccC | ccT | 8 | 8 | AY.33 | 0.000534 |
S | 715 | P715P | ccC | ccT | 8 | 8 | AY.47 | 0.000249 |
S | 715 | P715P | ccC | ccT | 7 | 7 | AY.113 | 0.000997 |
S | 715 | P715P | ccC | ccT | 7 | 7 | AY.75.1 | 0.001262 |
S | 715 | P715P | ccC | ccT | 7 | 7 | AY.98.1 | 0.000339 |
S | 715 | P715P | ccC | ccT | 7 | 7 | B.1.1.311 | 0.002507 |
S | 715 | P715P | ccC | ccT | 7 | 7 | B.1.214.2 | 0.004197 |
S | 715 | P715P | ccC | ccT | 7 | 7 | C.37 | 0.000812 |
S | 715 | P715P | ccC | ccT | 7 | 7 | P.1.6 | 0.013619 |
S | 715 | P715P | ccC | ccT | 6 | 6 | AY.119 | 0.000212 |
S | 715 | P715P | ccC | ccT | 6 | 6 | AY.9 | 0.000406 |
S | 715 | P715P | ccC | ccT | 6 | 6 | B.1.1.222 | 0.001224 |
S | 715 | P715P | ccC | ccT | 6 | 6 | B.1.349 | 0.004289 |
S | 715 | P715P | ccC | ccA | 6 | 6 | B.1.400 | 0.002574 |
S | 715 | P715P | ccC | ccT | 6 | 6 | B.1.596 | 0.000523 |
S | 715 | P715P | ccC | ccT | 6 | 6 | B.1.628 | 0.002114 |
S | 715 | P715P | ccC | ccT | 6 | 6 | C.30 | 0.010363 |
S | 715 | P715P | ccC | ccT | 5 | 5 | AY.12 | 0.00158 |
S | 715 | P715P | ccC | ccT | 3 | 5 | AY.120 | 0.000112 |
S | 715 | P715P | ccC | ccA | 2 | 5 | AY.120 | 0.000074 |
S | 715 | P715P | ccC | ccT | 5 | 5 | AY.29 | 0.000079 |
S | 715 | P715P | ccC | ccT | 5 | 5 | AY.39.1 | 0.000198 |
S | 715 | P715P | ccC | ccT | 3 | 5 | AY.45 | 0.000365 |
S | 715 | P715P | ccC | ccA | 2 | 5 | AY.45 | 0.000243 |
S | 715 | P715P | ccC | ccT | 3 | 5 | B.1.1.28 | 0.000934 |
S | 715 | P715P | ccC | ccA | 1 | 5 | B.1.1.28 | 0.000311 |
S | 715 | P715P | ccC | ccG | 1 | 5 | B.1.1.28 | 0.000311 |
S | 715 | P715P | ccC | ccT | 5 | 5 | B.1.1.523 | 0.007812 |
S | 715 | P715P | ccC | ccT | 5 | 5 | B.1.177.86 | 0.000917 |
S | 715 | P715P | ccC | ccT | 5 | 5 | B.1.539 | 0.087719 |
S | 715 | P715P | ccC | ccT | 4 | 4 | A.27 | 0.006623 |
S | 715 | P715P | ccC | ccT | 2 | 4 | AY.111 | 0.000366 |
S | 715 | P715P | ccC | ccA | 2 | 4 | AY.111 | 0.000366 |
S | 715 | P715P | ccC | ccT | 3 | 4 | AY.26 | 0.000085 |
S | 715 | P715P | ccC | ccA | 1 | 4 | AY.26 | 0.000028 |
S | 715 | P715P | ccC | ccT | 4 | 4 | AY.42 | 0.000161 |
S | 715 | P715P | ccC | ccT | 2 | 4 | AY.59 | 0.001059 |
S | 715 | P715P | ccC | ccA | 2 | 4 | AY.59 | 0.001059 |
S | 715 | P715P | ccC | ccT | 4 | 4 | B.1.427 | 0.000202 |
S | 715 | P715P | ccC | ccT | 3 | 4 | B.1.621 | 0.000266 |
S | 715 | P715P | ccC | ccA | 1 | 4 | B.1.621 | 0.000089 |
S | 715 | P715P | ccC | ccT | 3 | 3 | AY.28 | 0.005671 |
S | 715 | P715P | ccC | ccT | 3 | 3 | AY.46 | 0.000312 |
S | 715 | P715P | ccC | ccT | 3 | 3 | AY.46.6 | 0.000217 |
S | 715 | P715P | ccC | ccT | 3 | 3 | AY.99.2 | 0.000276 |
S | 715 | P715P | ccC | ccT | 3 | 3 | B.1.1.117 | 0.029126 |
S | 715 | P715P | ccC | ccT | 3 | 3 | B.1.1.434 | 0.001046 |
S | 715 | P715P | ccC | ccT | 3 | 3 | B.1.234 | 0.000396 |
S | 715 | P715P | ccC | ccT | 3 | 3 | B.1.243 | 0.000209 |
S | 715 | P715P | ccC | ccT | 3 | 3 | B.1.351.2 | 0.000908 |
S | 715 | P715P | ccC | ccT | 2 | 3 | B.1.36 | 0.000292 |
S | 715 | P715P | ccC | ccA | 1 | 3 | B.1.36 | 0.000146 |
S | 715 | P715P | ccC | ccT | 2 | 3 | B.1.466.2 | 0.000782 |
S | 715 | P715P | ccC | ccA | 1 | 3 | B.1.466.2 | 0.000391 |
S | 715 | P715P | ccC | ccA | 3 | 3 | P.1.14 | 0.000143 |
S | 715 | P715P | ccC | ccT | 2 | 2 | AY.13 | 0.000322 |
S | 715 | P715P | ccC | ccT | 2 | 2 | AY.23 | 0.000139 |
S | 715 | P715P | ccC | ccT | 2 | 2 | AY.46.4 | 0.000329 |
S | 715 | P715P | ccC | ccT | 2 | 2 | AY.46.5 | 0.000397 |
S | 715 | P715P | ccC | ccT | 2 | 2 | AY.5 | 0.000041 |
S | 715 | P715P | ccC | ccT | 2 | 2 | AY.5.3 | 0.000675 |
S | 715 | P715P | ccC | ccA | 1 | 2 | AY.55 | 0.000917 |
S | 715 | P715P | ccC | ccT | 1 | 2 | AY.55 | 0.000917 |
S | 715 | P715P | ccC | ccT | 1 | 2 | AY.6 | 0.000041 |
S | 715 | P715P | ccC | ccG | 1 | 2 | AY.6 | 0.000041 |
S | 715 | P715P | ccC | ccT | 2 | 2 | AY.7 | 0.000392 |
S | 715 | P715P | ccC | ccT | 1 | 2 | AY.78 | 0.001541 |
S | 715 | P715P | ccC | ccA | 1 | 2 | AY.78 | 0.001541 |
S | 715 | P715P | ccC | ccT | 2 | 2 | AY.84 | 0.000875 |
S | 715 | P715P | ccC | ccT | 2 | 2 | AY.98 | 0.000158 |
S | 715 | P715P | ccC | ccT | 2 | 2 | B.1.1.306 | 0.000877 |
S | 715 | P715P | ccC | ccT | 2 | 2 | B.1.1.519 | 0.000079 |
S | 715 | P715P | ccC | ccT | 2 | 2 | B.1.177.21 | 0.000153 |
S | 715 | P715P | ccC | ccT | 2 | 2 | B.1.177.33 | 0.003289 |
S | 715 | P715P | ccC | ccT | 2 | 2 | B.1.177.6 | 0.001953 |
S | 715 | P715P | ccC | ccT | 2 | 2 | B.1.210 | 0.004264 |
S | 715 | P715P | ccC | ccT | 2 | 2 | B.1.240 | 0.000431 |
S | 715 | P715P | ccC | ccT | 2 | 2 | B.1.258.17 | 0.000208 |
S | 715 | P715P | ccC | ccT | 2 | 2 | B.1.396 | 0.001411 |
S | 715 | P715P | ccC | ccT | 2 | 2 | B.1.438.1 | 0.000215 |
S | 715 | P715P | ccC | ccT | 2 | 2 | B.1.527 | 0.007407 |
S | 715 | P715P | ccC | ccT | 2 | 2 | B.1.617.1 | 0.000258 |
S | 715 | P715P | ccC | ccT | 2 | 2 | B.1.620 | 0.001892 |
S | 715 | P715P | ccC | ccT | 2 | 2 | N.4 | 0.008511 |
S | 715 | P715P | ccC | ccT | 2 | 2 | P.3 | 0.00319 |
S | 715 | P715P | ccC | ccT | 1 | 1 | A.19 | 0.009434 |
S | 715 | P715P | ccC | ccT | 1 | 1 | A.2 | 0.000662 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AL.1 | 0.012987 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AT.1 | 0.005128 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.120.1 | 0.000321 |
S | 715 | P715P | ccC | ccA | 1 | 1 | AY.16 | 0.00038 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.23.1 | 0.000417 |
S | 715 | P715P | ccC | ccA | 1 | 1 | AY.24 | 0.000431 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.27 | 0.000065 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.32 | 0.000532 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.34 | 0.000097 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.34.1 | 0.00051 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.38 | 0.000499 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.4.5 | 0.000107 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.5.4 | 0.000277 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.53 | 0.000288 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.58 | 0.000907 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.61 | 0.000105 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.70 | 0.000209 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.83 | 0.001724 |
S | 715 | P715P | ccC | ccA | 1 | 1 | AY.85 | 0.000427 |
S | 715 | P715P | ccC | ccG | 1 | 1 | AY.91 | 0.00073 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AY.94 | 0.000443 |
S | 715 | P715P | ccC | ccT | 1 | 1 | AZ.2 | 0.000821 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.1.1 | 0.000327 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.1.121 | 0.002427 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.1.25 | 0.000569 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.1.253 | 0.002506 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.1.279 | 0.001121 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.1.294 | 0.001266 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.1.318 | 0.000302 |
S | 715 | P715P | ccC | ccA | 1 | 1 | B.1.1.326 | 0.001761 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.1.329 | 0.003846 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.1.33 | 0.000421 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.1.37 | 0.000193 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.1.372 | 0.000689 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.1.448 | 0.002033 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.157 | 0.002985 |
S | 715 | P715P | ccC | ccA | 1 | 1 | B.1.160.10 | 0.008065 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.160.16 | 0.000929 |
S | 715 | P715P | ccC | ccA | 1 | 1 | B.1.160.30 | 0.002976 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.166 | 0.008475 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.167 | 0.007812 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.177.11 | 0.001698 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.177.20 | 0.001517 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.177.44 | 0.000519 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.177.56 | 0.000668 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.177.60 | 0.000218 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.177.65 | 0.000665 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.324 | 0.001605 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.36.29 | 0.000517 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.36.36 | 0.000602 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.36.8 | 0.001 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.367 | 0.000792 |
S | 715 | P715P | ccC | ccA | 1 | 1 | B.1.399 | 0.001934 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.404 | 0.001302 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.416 | 0.001269 |
S | 715 | P715P | ccC | ccA | 1 | 1 | B.1.456 | 0.003268 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.524 | 0.001406 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.525 | 0.000113 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.541 | 0.004425 |
S | 715 | P715P | ccC | ccA | 1 | 1 | B.1.546 | 0.003704 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.551 | 0.00129 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.564 | 0.000426 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.565 | 0.00081 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.581 | 0.009434 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.600 | 0.005848 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.1.609 | 0.000479 |
S | 715 | P715P | ccC | ccT | 1 | 1 | B.40 | 0.000364 |
S | 715 | P715P | ccC | ccA | 1 | 1 | B.45 | 0.003831 |
S | 715 | P715P | ccC | ccT | 1 | 1 | C.23 | 0.005814 |
S | 715 | P715P | ccC | ccT | 1 | 1 | N.5 | 0.001767 |
S | 715 | P715P | ccC | ccT | 1 | 1 | P.1.1 | 0.000318 |
S | 715 | P715P | ccC | ccT | 1 | 1 | P.1.12 | 0.000484 |
S | 715 | P715P | ccC | ccA | 1 | 1 | P.1.17 | 0.000162 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|