CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 681 | P681R | nonsyn | cCt | cGt | 2762920 | 2762560 | 0.99987 | 23603-23605 | |
S | 681 | P681R | nonsyn | cCT | cGC | 2762920 | 304 | 0.000110029 | 23603-23605 | |
S | 681 | P681R | nonsyn | cCT | cGG | 2762920 | 31 | 0.00001122 | 23603-23605 | |
S | 681 | P681R | nonsyn | cCT | cGA | 2762920 | 25 | 0.0000090484 | 23603-23605 |
Details of the mutation P681R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 681 | P681R | cCt | cGt | 2762560 | 2762920 | All | 0.528372 |
S | 681 | P681R | cCT | cGC | 304 | 2762920 | All | 0.000058 |
S | 681 | P681R | cCT | cGG | 31 | 2762920 | All | 0.000006 |
S | 681 | P681R | cCT | cGA | 25 | 2762920 | All | 0.000005 |
S | 681 | P681R | cCt | cGt | 641813 | 641875 | AY.4 | 0.998932 |
S | 681 | P681R | cCT | cGC | 62 | 641875 | AY.4 | 0.000096 |
S | 681 | P681R | cCt | cGt | 264157 | 264167 | B.1.617.2 | 0.994661 |
S | 681 | P681R | cCT | cGC | 10 | 264167 | B.1.617.2 | 0.000038 |
S | 681 | P681R | cCt | cGt | 224371 | 224371 | AY.43 | 0.994068 |
S | 681 | P681R | cCt | cGt | 165836 | 165844 | AY.25 | 0.997474 |
S | 681 | P681R | cCT | cGC | 7 | 165844 | AY.25 | 0.000042 |
S | 681 | P681R | cCT | cGA | 1 | 165844 | AY.25 | 0.000006 |
S | 681 | P681R | cCt | cGt | 163492 | 163539 | AY.44 | 0.995137 |
S | 681 | P681R | cCT | cGC | 44 | 163539 | AY.44 | 0.000268 |
S | 681 | P681R | cCT | cGG | 2 | 163539 | AY.44 | 0.000012 |
S | 681 | P681R | cCT | cGA | 1 | 163539 | AY.44 | 0.000006 |
S | 681 | P681R | cCt | cGt | 160438 | 160443 | AY.103 | 0.996169 |
S | 681 | P681R | cCT | cGC | 5 | 160443 | AY.103 | 0.000031 |
S | 681 | P681R | cCt | cGt | 100253 | 100318 | AY.3 | 0.997155 |
S | 681 | P681R | cCT | cGG | 24 | 100318 | AY.3 | 0.000239 |
S | 681 | P681R | cCT | cGC | 22 | 100318 | AY.3 | 0.000219 |
S | 681 | P681R | cCT | cGA | 19 | 100318 | AY.3 | 0.000189 |
S | 681 | P681R | cCt | cGt | 63336 | 63336 | AY.29 | 0.999038 |
S | 681 | P681R | cCt | cGt | 48346 | 48348 | AY.5 | 0.998307 |
S | 681 | P681R | cCT | cGC | 2 | 48348 | AY.5 | 0.000041 |
S | 681 | P681R | cCt | cGt | 46079 | 46079 | AY.4.2 | 0.999393 |
S | 681 | P681R | cCt | cGt | 40198 | 40198 | AY.39 | 0.993353 |
S | 681 | P681R | cCt | cGt | 37622 | 37626 | AY.102 | 0.997508 |
S | 681 | P681R | cCT | cGC | 4 | 37626 | AY.102 | 0.000106 |
S | 681 | P681R | cCt | cGt | 35205 | 35212 | AY.26 | 0.996659 |
S | 681 | P681R | cCT | cGC | 7 | 35212 | AY.26 | 0.000198 |
S | 681 | P681R | cCt | cGt | 31932 | 32054 | AY.47 | 0.99325 |
S | 681 | P681R | cCT | cGC | 122 | 32054 | AY.47 | 0.003795 |
S | 681 | P681R | cCt | cGt | 28229 | 28229 | AY.119 | 0.996716 |
S | 681 | P681R | cCt | cGt | 27103 | 27105 | AY.9.2 | 0.995482 |
S | 681 | P681R | cCT | cGG | 1 | 27105 | AY.9.2 | 0.000037 |
S | 681 | P681R | cCT | cGC | 1 | 27105 | AY.9.2 | 0.000037 |
S | 681 | P681R | cCt | cGt | 26857 | 26857 | AY.120 | 0.998513 |
S | 681 | P681R | cCt | cGt | 25660 | 25661 | AY.20 | 0.997279 |
S | 681 | P681R | cCT | cGC | 1 | 25661 | AY.20 | 0.000039 |
S | 681 | P681R | cCt | cGt | 25144 | 25144 | AY.39.1 | 0.996039 |
S | 681 | P681R | cCt | cGt | 24764 | 24764 | AY.42 | 0.996259 |
S | 681 | P681R | cCt | cGt | 24289 | 24289 | AY.6 | 0.998972 |
S | 681 | P681R | cCt | cGt | 21661 | 21661 | AY.100 | 0.99655 |
S | 681 | P681R | cCt | cGt | 20582 | 20583 | AY.98.1 | 0.996804 |
S | 681 | P681R | cCT | cGC | 1 | 20583 | AY.98.1 | 0.000048 |
S | 681 | P681R | cCt | cGt | 17789 | 17790 | AY.75 | 0.996583 |
S | 681 | P681R | cCT | cGC | 1 | 17790 | AY.75 | 0.000056 |
S | 681 | P681R | cCt | cGt | 15915 | 15915 | AY.118 | 0.997056 |
S | 681 | P681R | cCt | cGt | 15441 | 15441 | AY.27 | 0.999353 |
S | 681 | P681R | cCt | cGt | 14855 | 14855 | AY.33 | 0.991987 |
S | 681 | P681R | cCt | cGt | 14783 | 14783 | AY.9 | 0.999256 |
S | 681 | P681R | cCt | cGt | 14277 | 14277 | AY.23 | 0.995815 |
S | 681 | P681R | cCt | cGt | 13773 | 13773 | AY.46.6 | 0.994512 |
S | 681 | P681R | cCt | cGt | 12586 | 12587 | AY.98 | 0.994233 |
S | 681 | P681R | cCT | cGC | 1 | 12587 | AY.98 | 0.000079 |
S | 681 | P681R | cCt | cGt | 11896 | 11896 | AY.9.1 | 0.995981 |
S | 681 | P681R | cCt | cGt | 11791 | 11792 | AY.117 | 0.996535 |
S | 681 | P681R | cCT | cGG | 1 | 11792 | AY.117 | 0.000085 |
S | 681 | P681R | cCt | cGt | 11703 | 11703 | AY.3.1 | 0.997783 |
S | 681 | P681R | cCt | cGt | 11345 | 11345 | AY.14 | 0.998504 |
S | 681 | P681R | cCt | cGt | 10732 | 10732 | AY.99.2 | 0.989033 |
S | 681 | P681R | cCt | cGt | 10457 | 10457 | AY.54 | 0.997044 |
S | 681 | P681R | cCt | cGt | 10283 | 10283 | AY.34 | 0.997091 |
S | 681 | P681R | cCt | cGt | 9440 | 9440 | AY.61 | 0.989103 |
S | 681 | P681R | cCt | cGt | 9355 | 9356 | AY.46 | 0.973668 |
S | 681 | P681R | cCT | cGC | 1 | 9356 | AY.46 | 0.000104 |
S | 681 | P681R | cCt | cGt | 8953 | 8953 | AY.4.5 | 0.962378 |
S | 681 | P681R | cCt | cGt | 8856 | 8856 | AY.7.1 | 0.998084 |
S | 681 | P681R | cCt | cGt | 8846 | 8846 | AY.110 | 0.996845 |
S | 681 | P681R | cCt | cGt | 8632 | 8632 | AY.74 | 0.998265 |
S | 681 | P681R | cCt | cGt | 8060 | 8060 | AY.45 | 0.980774 |
S | 681 | P681R | cCt | cGt | 7663 | 7664 | B.1.617.1 | 0.988264 |
S | 681 | P681R | cCT | cGA | 1 | 7664 | B.1.617.1 | 0.000129 |
S | 681 | P681R | cCt | cGt | 7352 | 7358 | AY.121 | 0.994858 |
S | 681 | P681R | cCT | cGC | 6 | 7358 | AY.121 | 0.000812 |
S | 681 | P681R | cCt | cGt | 6985 | 6985 | AY.113 | 0.994589 |
S | 681 | P681R | cCt | cGt | 6695 | 6695 | AY.4.2.1 | 0.997467 |
S | 681 | P681R | cCt | cGt | 6661 | 6661 | AY.36 | 0.987254 |
S | 681 | P681R | cCt | cGt | 6207 | 6207 | AY.13 | 0.999195 |
S | 681 | P681R | cCt | cGt | 6074 | 6074 | AY.46.4 | 0.999177 |
S | 681 | P681R | cCt | cGt | 5483 | 5483 | AY.75.1 | 0.98864 |
S | 681 | P681R | cCt | cGt | 5447 | 5447 | AY.111 | 0.997619 |
S | 681 | P681R | cCt | cGt | 5345 | 5345 | AY.69 | 0.99776 |
S | 681 | P681R | cCt | cGt | 5100 | 5100 | AY.7 | 0.999608 |
S | 681 | P681R | cCt | cGt | 5029 | 5034 | AY.46.5 | 0.997817 |
S | 681 | P681R | cCT | cGC | 5 | 5034 | AY.46.5 | 0.000992 |
S | 681 | P681R | cCt | cGt | 4782 | 4783 | AY.70 | 0.997081 |
S | 681 | P681R | cCT | cGC | 1 | 4783 | AY.70 | 0.000209 |
S | 681 | P681R | cCt | cGt | 4534 | 4534 | AY.29.1 | 0.999779 |
S | 681 | P681R | cCt | cGt | 4316 | 4316 | AY.114 | 0.997458 |
S | 681 | P681R | cCt | cGt | 4282 | 4282 | AY.35 | 0.997903 |
S | 681 | P681R | cCt | cGt | 3651 | 3651 | AY.93 | 0.996996 |
S | 681 | P681R | cCt | cGt | 3601 | 3601 | AY.5.4 | 0.996403 |
S | 681 | P681R | cCt | cGt | 3574 | 3574 | AY.68 | 0.978374 |
S | 681 | P681R | cCt | cGt | 3468 | 3468 | AY.53 | 0.997125 |
S | 681 | P681R | cCt | cGt | 3458 | 3458 | AY.92 | 0.993393 |
S | 681 | P681R | cCt | cGt | 3454 | 3454 | AY.116 | 0.990536 |
S | 681 | P681R | cCt | cGt | 3354 | 3354 | AY.41 | 0.985891 |
S | 681 | P681R | cCt | cGt | 3205 | 3206 | AY.116.1 | 0.998131 |
S | 681 | P681R | cCT | cGG | 1 | 3206 | AY.116.1 | 0.000311 |
S | 681 | P681R | cCt | cGt | 3152 | 3152 | AY.37 | 0.996207 |
S | 681 | P681R | cCt | cGt | 3139 | 3139 | AY.12 | 0.992099 |
S | 681 | P681R | cCt | cGt | 3106 | 3106 | AY.120.1 | 0.997111 |
S | 681 | P681R | cCt | cGt | 2962 | 2962 | AY.106 | 0.991962 |
S | 681 | P681R | cCt | cGt | 2948 | 2948 | AY.5.3 | 0.994602 |
S | 681 | P681R | cCt | cGt | 2798 | 2798 | AY.2 | 0.996439 |
S | 681 | P681R | cCt | cGt | 2585 | 2585 | AY.16 | 0.981397 |
S | 681 | P681R | cCt | cGt | 2585 | 2585 | AY.63 | 1 |
S | 681 | P681R | cCt | cGt | 2521 | 2521 | AY.30 | 0.997626 |
S | 681 | P681R | cCt | cGt | 2516 | 2516 | AY.1 | 0.995647 |
S | 681 | P681R | cCt | cGt | 2420 | 2420 | AY.4.4 | 0.99018 |
S | 681 | P681R | cCt | cGt | 2396 | 2396 | AY.23.1 | 1 |
S | 681 | P681R | cCt | cGt | 2329 | 2329 | AY.85 | 0.994874 |
S | 681 | P681R | cCt | cGt | 2319 | 2319 | B.1.466.2 | 0.907277 |
S | 681 | P681R | cCt | cGt | 2298 | 2298 | AY.24 | 0.990517 |
S | 681 | P681R | cCt | cGt | 2288 | 2288 | AY.62 | 0.99695 |
S | 681 | P681R | cCt | cGt | 2269 | 2270 | AY.84 | 0.992563 |
S | 681 | P681R | cCT | cGA | 1 | 2270 | AY.84 | 0.000437 |
S | 681 | P681R | cCt | cGt | 2253 | 2253 | AY.94 | 0.997344 |
S | 681 | P681R | cCt | cGt | 2150 | 2151 | AY.67 | 0.998143 |
S | 681 | P681R | cCT | cGA | 1 | 2151 | AY.67 | 0.000464 |
S | 681 | P681R | cCt | cGt | 2147 | 2147 | AY.48 | 0.998605 |
S | 681 | P681R | cCt | cGt | 2134 | 2134 | AY.107 | 0.994408 |
S | 681 | P681R | cCt | cGt | 2104 | 2104 | Q.4 | 0.956799 |
S | 681 | P681R | cCt | cGt | 2101 | 2101 | AY.16.1 | 0.987312 |
S | 681 | P681R | cCt | cGt | 2094 | 2094 | AY.71 | 0.994774 |
S | 681 | P681R | cCt | cGt | 2029 | 2029 | AY.101 | 0.995096 |
S | 681 | P681R | cCt | cGt | 2003 | 2003 | AY.120.2.1 | 0.998007 |
S | 681 | P681R | cCt | cGt | 1973 | 1973 | AY.38 | 0.985022 |
S | 681 | P681R | cCt | cGt | 1915 | 1915 | B.1 | 0.01754 |
S | 681 | P681R | cCt | cGt | 1898 | 1898 | AY.34.1 | 0.967874 |
S | 681 | P681R | cCt | cGt | 1883 | 1883 | AY.10 | 0.99788 |
S | 681 | P681R | cCt | cGt | 1874 | 1874 | AY.32 | 0.99787 |
S | 681 | P681R | cCt | cGt | 1874 | 1874 | AY.59 | 0.992585 |
S | 681 | P681R | cCt | cGt | 1868 | 1868 | AY.65 | 0.995736 |
S | 681 | P681R | cCt | cGt | 1782 | 1782 | AY.7.2 | 0.996644 |
S | 681 | P681R | cCt | cGt | 1675 | 1675 | AY.64 | 0.997024 |
S | 681 | P681R | cCt | cGt | 1650 | 1650 | AY.8 | 1 |
S | 681 | P681R | cCt | cGt | 1563 | 1563 | AY.46.2 | 0.993011 |
S | 681 | P681R | cCt | cGt | 1547 | 1547 | AY.105 | 0.994855 |
S | 681 | P681R | cCt | cGt | 1520 | 1520 | AY.57 | 0.997375 |
S | 681 | P681R | cCt | cGt | 1500 | 1500 | AY.73 | 0.998004 |
S | 681 | P681R | cCt | cGt | 1461 | 1461 | AY.90 | 1 |
S | 681 | P681R | cCt | cGt | 1400 | 1400 | A.23.1 | 0.985915 |
S | 681 | P681R | cCt | cGt | 1378 | 1378 | AY.39.1.1 | 0.998551 |
S | 681 | P681R | cCt | cGt | 1353 | 1353 | AY.4.1 | 0.997788 |
S | 681 | P681R | cCt | cGt | 1336 | 1336 | AY.91 | 0.975895 |
S | 681 | P681R | cCt | cGt | 1335 | 1335 | AY.109 | 0.987426 |
S | 681 | P681R | cCt | cGt | 1247 | 1247 | AY.50 | 0.996803 |
S | 681 | P681R | cCt | cGt | 1236 | 1236 | AY.95 | 0.940639 |
S | 681 | P681R | cCt | cGt | 1224 | 1224 | AY.52 | 0.996743 |
S | 681 | P681R | cCt | cGt | 1203 | 1203 | AY.86 | 0.99834 |
S | 681 | P681R | cCt | cGt | 1195 | 1195 | AY.87 | 0.995004 |
S | 681 | P681R | cCt | cGt | 1182 | 1182 | AY.4.3 | 0.994949 |
S | 681 | P681R | cCt | cGt | 1124 | 1125 | AY.88 | 0.993811 |
S | 681 | P681R | cCT | cGA | 1 | 1125 | AY.88 | 0.000884 |
S | 681 | P681R | cCt | cGt | 1100 | 1100 | AY.51 | 1 |
S | 681 | P681R | cCt | cGt | 1088 | 1088 | AY.58 | 0.987296 |
S | 681 | P681R | cCt | cGt | 1082 | 1082 | AY.55 | 0.992661 |
S | 681 | P681R | cCt | cGt | 1061 | 1061 | AY.60 | 0.99531 |
S | 681 | P681R | cCt | cGt | 1053 | 1053 | AY.46.3 | 0.983193 |
S | 681 | P681R | cCt | cGt | 1036 | 1036 | AY.40 | 0.999036 |
S | 681 | P681R | cCt | cGt | 971 | 971 | AY.46.1 | 0.99692 |
S | 681 | P681R | cCt | cGt | 938 | 938 | AY.99 | 0.98426 |
S | 681 | P681R | cCt | cGt | 935 | 935 | AY.66 | 1 |
S | 681 | P681R | cCt | cGt | 899 | 899 | AY.108 | 0.99118 |
S | 681 | P681R | cCt | cGt | 887 | 887 | AY.77 | 1 |
S | 681 | P681R | cCt | cGt | 886 | 886 | AY.80 | 1 |
S | 681 | P681R | cCt | cGt | 869 | 869 | AY.19 | 0.990878 |
S | 681 | P681R | cCt | cGt | 823 | 823 | AY.79 | 0.996368 |
S | 681 | P681R | cCt | cGt | 771 | 771 | B.1.551 | 0.994839 |
S | 681 | P681R | cCt | cGt | 762 | 762 | AY.120.2 | 0.979434 |
S | 681 | P681R | cCt | cGt | 747 | 747 | AY.11 | 1 |
S | 681 | P681R | cCt | cGt | 735 | 735 | AY.72 | 1 |
S | 681 | P681R | cCt | cGt | 734 | 734 | AY.82 | 0.995929 |
S | 681 | P681R | cCt | cGt | 649 | 649 | AY.39.2 | 1 |
S | 681 | P681R | cCt | cGt | 647 | 647 | AY.78 | 0.996918 |
S | 681 | P681R | cCt | cGt | 640 | 640 | AY.99.1 | 0.993789 |
S | 681 | P681R | cCt | cGt | 620 | 620 | AY.56 | 0.995185 |
S | 681 | P681R | cCt | cGt | 586 | 586 | AY.97 | 0.996599 |
S | 681 | P681R | cCt | cGt | 578 | 578 | AY.83 | 0.996552 |
S | 681 | P681R | cCt | cGt | 524 | 524 | AY.21 | 0.994307 |
S | 681 | P681R | cCt | cGt | 513 | 513 | AY.28 | 0.969754 |
S | 681 | P681R | cCt | cGt | 506 | 506 | AY.9.2.1 | 1 |
S | 681 | P681R | cCt | cGt | 501 | 501 | AY.81 | 0.998008 |
S | 681 | P681R | cCt | cGt | 498 | 498 | AY.104 | 0.988095 |
S | 681 | P681R | cCt | cGt | 477 | 477 | AY.22 | 0.997908 |
S | 681 | P681R | cCt | cGt | 473 | 473 | AU.3 | 0.99789 |
S | 681 | P681R | cCt | cGt | 449 | 449 | AY.15 | 0.997778 |
S | 681 | P681R | cCt | cGt | 412 | 412 | AU.2 | 0.997579 |
S | 681 | P681R | cCt | cGt | 406 | 406 | AY.5.2 | 1 |
S | 681 | P681R | cCt | cGt | 399 | 399 | AY.96 | 0.827801 |
S | 681 | P681R | cCt | cGt | 334 | 334 | B.1.617.3 | 0.997015 |
S | 681 | P681R | cCt | cGt | 311 | 311 | AY.49 | 0.99361 |
S | 681 | P681R | cCt | cGt | 305 | 305 | B.1.1.25 | 0.173394 |
S | 681 | P681R | cCt | cGt | 265 | 265 | AY.5.1 | 0.996241 |
S | 681 | P681R | cCt | cGt | 245 | 245 | AY.91.1 | 0.995935 |
S | 681 | P681R | cCt | cGt | 223 | 223 | B | 0.028502 |
S | 681 | P681R | cCt | cGt | 209 | 209 | P.1.8 | 1 |
S | 681 | P681R | cCt | cGt | 207 | 207 | AY.76 | 1 |
S | 681 | P681R | cCt | cGt | 204 | 204 | AY.89 | 1 |
S | 681 | P681R | cCt | cGt | 189 | 189 | B.1.1.7 | 0.000169 |
S | 681 | P681R | cCt | cGt | 184 | 184 | AY.115 | 0.958333 |
S | 681 | P681R | cCt | cGt | 148 | 150 | C.36 | 0.134791 |
S | 681 | P681R | cCT | cGG | 2 | 150 | C.36 | 0.001821 |
S | 681 | P681R | cCt | cGt | 136 | 136 | B.1.1.528 | 0.653846 |
S | 681 | P681R | cCt | cGt | 123 | 123 | B.1.1 | 0.002231 |
S | 681 | P681R | cCt | cGt | 120 | 120 | AY.17 | 0.983607 |
S | 681 | P681R | cCt | cGt | 99 | 99 | AY.18 | 1 |
S | 681 | P681R | cCt | cGt | 99 | 99 | B.1.1.526 | 0.351064 |
S | 681 | P681R | cCt | cGt | 98 | 98 | P.1.11 | 1 |
S | 681 | P681R | cCt | cGt | 67 | 67 | B.1.1.50 | 0.045485 |
S | 681 | P681R | cCt | cGt | 63 | 63 | B.1.596 | 0.00549 |
S | 681 | P681R | cCt | cGt | 57 | 57 | B.1.1.334 | 0.934426 |
S | 681 | P681R | cCt | cGt | 55 | 55 | P.1 | 0.000866 |
S | 681 | P681R | cCt | cGt | 54 | 54 | AY.31 | 1 |
S | 681 | P681R | cCt | cGt | 54 | 54 | B.1.604 | 0.931034 |
S | 681 | P681R | cCt | cGt | 47 | 47 | B.1.351 | 0.001397 |
S | 681 | P681R | cCt | cGt | 42 | 42 | B.1.1.141 | 0.084507 |
S | 681 | P681R | cCt | cGt | 42 | 42 | B.1.462 | 0.304348 |
S | 681 | P681R | cCt | cGt | 39 | 39 | B.1.36.22 | 0.047101 |
S | 681 | P681R | cCt | cGt | 37 | 37 | B.1.36.8 | 0.037 |
S | 681 | P681R | cCt | cGt | 35 | 35 | A | 0.013545 |
S | 681 | P681R | cCt | cGt | 35 | 35 | Q.8 | 0.005772 |
S | 681 | P681R | cCt | cGt | 31 | 31 | B.1.576 | 0.028105 |
S | 681 | P681R | cCt | cGt | 26 | 26 | B.1.2 | 0.000229 |
S | 681 | P681R | cCt | cGt | 22 | 22 | B.1.177 | 0.00029 |
S | 681 | P681R | cCt | cGt | 22 | 22 | B.1.623 | 0.011803 |
S | 681 | P681R | cCt | cGt | 20 | 20 | C.37 | 0.002321 |
S | 681 | P681R | cCt | cGt | 18 | 18 | B.1.474 | 0.034221 |
S | 681 | P681R | cCt | cGt | 17 | 17 | B.1.633 | 0.708333 |
S | 681 | P681R | cCt | cGt | 16 | 16 | B.1.621 | 0.001416 |
S | 681 | P681R | cCt | cGt | 14 | 14 | B.1.243 | 0.000974 |
S | 681 | P681R | cCt | cGt | 9 | 9 | B.1.1.216 | 0.008014 |
S | 681 | P681R | cCt | cGt | 9 | 9 | B.1.526 | 0.000212 |
S | 681 | P681R | cCt | cGt | 9 | 9 | B.1.632 | 0.060403 |
S | 681 | P681R | cCt | cGt | 8 | 8 | B.1.1.1 | 0.002614 |
S | 681 | P681R | cCt | cGt | 8 | 8 | C.14 | 0.034632 |
S | 681 | P681R | cCt | cGt | 7 | 7 | B.1.258 | 0.000466 |
S | 681 | P681R | cCt | cGt | 7 | 7 | P.1.7 | 0.002235 |
S | 681 | P681R | cCt | cGt | 6 | 6 | B.1.1.294 | 0.007595 |
S | 681 | P681R | cCt | cGt | 6 | 6 | B.1.1.34 | 0.078947 |
S | 681 | P681R | cCt | cGt | 6 | 6 | B.1.214 | 0.021978 |
S | 681 | P681R | cCt | cGt | 6 | 6 | B.1.36 | 0.000875 |
S | 681 | P681R | cCt | cGt | 6 | 6 | B.1.36.31 | 0.010508 |
S | 681 | P681R | cCt | cGt | 6 | 6 | B.1.469 | 0.021661 |
S | 681 | P681R | cCt | cGt | 6 | 6 | B.1.628 | 0.002114 |
S | 681 | P681R | cCt | cGt | 5 | 5 | B.1.1.306 | 0.002192 |
S | 681 | P681R | cCt | cGt | 5 | 5 | B.1.1.317 | 0.002058 |
S | 681 | P681R | cCt | cGt | 5 | 5 | B.1.177.86 | 0.000917 |
S | 681 | P681R | cCt | cGt | 5 | 5 | B.1.36.1 | 0.005701 |
S | 681 | P681R | cCt | cGt | 5 | 5 | B.1.369 | 0.001426 |
S | 681 | P681R | cCt | cGt | 5 | 5 | B.1.375 | 0.004098 |
S | 681 | P681R | cCt | cGt | 5 | 5 | B.1.459 | 0.020408 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.1.311 | 0.001433 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.1.519 | 0.000159 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.1.523 | 0.00625 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.1.53 | 0.054795 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.157 | 0.01194 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.192 | 0.037037 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.629 | 0.053333 |
S | 681 | P681R | cCt | cGt | 4 | 4 | B.1.637 | 0.000292 |
S | 681 | P681R | cCt | cGt | 3 | 3 | 0.166667 | |
S | 681 | P681R | cCt | cGt | 3 | 3 | B.1.1.355 | 0.046154 |
S | 681 | P681R | cCt | cGt | 3 | 3 | B.1.1.420 | 0.003018 |
S | 681 | P681R | cCt | cGt | 3 | 3 | B.1.247 | 0.044776 |
S | 681 | P681R | cCt | cGt | 3 | 3 | B.1.335 | 0.030928 |
S | 681 | P681R | cCt | cGt | 3 | 3 | B.1.36.29 | 0.001552 |
S | 681 | P681R | cCt | cGt | 3 | 3 | B.1.600 | 0.017544 |
S | 681 | P681R | cCt | cGt | 3 | 3 | B.1.618 | 0.012097 |
S | 681 | P681R | cCt | cGt | 2 | 2 | A.1 | 0.000564 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.1.409 | 0.005666 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.1.512 | 0.057143 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.160 | 0.000062 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.258.3 | 0.00335 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.301 | 0.011834 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.323 | 0.041667 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.351.3 | 0.001753 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.36.17 | 0.000988 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.367 | 0.001585 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.380 | 0.013245 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.415.1 | 0.015152 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.427 | 0.000101 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.441 | 0.019231 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.530 | 0.014286 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.564 | 0.000852 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.582 | 0.000981 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.609 | 0.000959 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.1.619 | 0.001742 |
S | 681 | P681R | cCt | cGt | 2 | 2 | B.6 | 0.00182 |
S | 681 | P681R | cCt | cGt | 2 | 2 | C.18 | 0.005181 |
S | 681 | P681R | cCt | cGt | 2 | 2 | C.33 | 0.117647 |
S | 681 | P681R | cCt | cGt | 2 | 2 | C.36.3.1 | 0.005435 |
S | 681 | P681R | cCt | cGt | 2 | 2 | C.37.1 | 0.005236 |
S | 681 | P681R | cCt | cGt | 2 | 2 | L.3 | 0.007092 |
S | 681 | P681R | cCt | cGt | 2 | 2 | P.1.1 | 0.000635 |
S | 681 | P681R | cCt | cGt | 2 | 2 | P.1.13 | 0.001797 |
S | 681 | P681R | cCt | cGt | 2 | 2 | P.1.16 | 0.000748 |
S | 681 | P681R | cCt | cGt | 2 | 2 | P.1.17 | 0.000324 |
S | 681 | P681R | cCt | cGt | 2 | 2 | P.1.17.1 | 0.00175 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.117 | 0.009709 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.121 | 0.002427 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.220 | 0.001859 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.231 | 0.003096 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.269 | 0.001353 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.28 | 0.000311 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.298 | 0.000862 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.301 | 0.001179 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.312 | 0.001912 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.318 | 0.000302 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.39 | 0.00051 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.404 | 0.015873 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.464 | 0.001473 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.1.51 | 0.001718 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.126 | 0.001276 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.131 | 0.008772 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.177.73 | 0.000566 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.206 | 0.000816 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.221 | 0.000071 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.222 | 0.001692 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.258.11 | 0.000396 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.258.12 | 0.007874 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.355 | 0.011111 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.366 | 0.004878 |
S | 681 | P681R | cCT | cGC | 1 | 1 | B.1.377 | 0.004566 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.393 | 0.028571 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.396 | 0.000706 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.400 | 0.000429 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.432 | 0.011236 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.433 | 0.003195 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.460 | 0.017857 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.485 | 0.014925 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.525 | 0.000113 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.527 | 0.003704 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.533 | 0.009615 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.560 | 0.00463 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.580 | 0.004065 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.599 | 0.00365 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.619.1 | 0.000641 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.1.631 | 0.003367 |
S | 681 | P681R | cCt | cGt | 1 | 1 | B.55 | 0.00295 |
S | 681 | P681R | cCt | cGt | 1 | 1 | C.17 | 0.055556 |
S | 681 | P681R | cCt | cGt | 1 | 1 | C.36.3 | 0.000567 |
S | 681 | P681R | cCt | cGt | 1 | 1 | P.1.15 | 0.000232 |
S | 681 | P681R | cCt | cGt | 1 | 1 | P.2 | 0.000187 |
S | 681 | P681R | cCt | cGt | 1 | 1 | P.5 | 0.013699 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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