CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = P25P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S25P25PsynccCccT11603114570.98741721635-21637
S25P25PsynccCccA116031010.0087046521635-21637
S25P25PsynccCccG11603450.0038783121635-21637

Details of the mutation P25P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S25P25PccCccT1145711603All0.002191
S25P25PccCccA10111603All0.000019
S25P25PccCccG4511603All0.000009
S25P25PccCccT50485049B.1.1.370.973578
S25P25PccCccG15049B.1.1.370.000193
S25P25PccCccT15581558B.1.619.10.999359
S25P25PccCccT11011101B.1.6190.959059
S25P25PccCccT600631B.1.1.70.000537
S25P25PccCccA30631B.1.1.70.000027
S25P25PccCccG1631B.1.1.70.000001
S25P25PccCccT380380AY.540.036232
S25P25PccCccT343344AY.1030.00213
S25P25PccCccA1344AY.1030.000006
S25P25PccCccT216253AY.40.000336
S25P25PccCccA36253AY.40.000056
S25P25PccCccG1253AY.40.000002
S25P25PccCccT185198B.1.617.20.000697
S25P25PccCccA7198B.1.617.20.000026
S25P25PccCccG6198B.1.617.20.000023
S25P25PccCccT185185B.1.6300.968586
S25P25PccCccT148148B.1.5260.003479
S25P25PccCccT126126B.1.20.001109
S25P25PccCccT9898AY.250.000589
S25P25PccCccT8792B.10.000797
S25P25PccCccA392B.10.000027
S25P25PccCccG292B.10.000018
S25P25PccCccT8080AY.4.20.001735
S25P25PccCccT7373B.1.177.800.139579
S25P25PccCccT6668AY.440.000402
S25P25PccCccA268AY.440.000012
S25P25PccCccT6161AY.1000.002806
S25P25PccCccT5959B.1.1.2220.012036
S25P25PccCccT5757P.10.000898
S25P25PccCccT5252AY.470.001617
S25P25PccCccT4949AY.390.001211
S25P25PccCccT4547AY.430.000199
S25P25PccCccA247AY.430.000009
S25P25PccCccT4445B.1.1.5190.001747
S25P25PccCccA145B.1.1.5190.00004
S25P25PccCccT3940AY.30.000388
S25P25PccCccA140AY.30.00001
S25P25PccCccT3535AY.260.000991
S25P25PccCccT3333AY.99.20.003041
S25P25PccCccG2929B.1.1.280.009026
S25P25PccCccT2828AY.1210.003789
S25P25PccCccT2222B.1.10.000399
S25P25PccCccT2222B.1.177.810.004165
S25P25PccCccT2121AY.200.000816
S25P25PccCccT1820B.1.1770.000237
S25P25PccCccA220B.1.1770.000026
S25P25PccCccT2020C.370.002321
S25P25PccCccT1717AY.140.001496
S25P25PccCccT1717AY.46.30.015873
S25P25PccCccT1216B.1.2580.000799
S25P25PccCccA416B.1.2580.000266
S25P25PccCccT1616B.1.3510.000476
S25P25PccCccT1515B.1.177.830.022222
S25P25PccCccT1515B.1.360.002189
S25P25PccCccT1315B.1.5960.001133
S25P25PccCccA215B.1.5960.000174
S25P25PccCccT1313B.1.177.210.000994
S25P25PccCccT1313P.1.150.00302
S25P25PccCccT1212AY.50.000248
S25P25PccCccT1212B.1.438.10.001287
S25P25PccCccT1212W.20.057971
S25P25PccCccT1111B.1.2360.022587
S25P25PccCccT1111B.1.4290.000259
S25P25PccCccT1010AY.800.011287
S25P25PccCccT1010B.1.6280.003524
S25P25PccCccT99B.1.1.390.004587
S25P25PccCccT99B.1.6370.000658
S25P25PccCccT88AY.330.000534
S25P25PccCccT88AY.98.10.000387
S25P25PccCccT88B.1.1.3540.035088
S25P25PccCccT88B.1.177.40.001688
S25P25PccCccT88B.1.2210.000568
S25P25PccCccT67AY.1020.000159
S25P25PccCccA17AY.1020.000027
S25P25PccCccT77AY.3.10.000597
S25P25PccCccT77AY.5.30.002362
S25P25PccCccT77AY.610.000733
S25P25PccCccT77B.1.3110.001922
S25P25PccCccT66AY.1190.000212
S25P25PccCccT66AY.290.000095
S25P25PccCccT66B.1.1600.000187
S25P25PccCccT66P.1.70.001916
S25P25PccCccT55AY.1180.000313
S25P25PccCccT55AY.210.009488
S25P25PccCccT55AY.90.000338
S25P25PccCccT55AY.9.20.000184
S25P25PccCccT55B.1.177.500.023474
S25P25PccCccT55B.1.2430.000348
S25P25PccCccT55C.36.30.002836
S25P25PccCccT55P.1.120.00242
S25P25PccCccT55Q.80.000825
S25P25PccCccT55R.10.00045
S25P25PccCccT240.111111
S25P25PccCccA240.111111
S25P25PccCccT44AY.4.50.00043
S25P25PccCccT44AY.420.000161
S25P25PccCccT44AY.590.002119
S25P25PccCccT44B.1.1.2160.003562
S25P25PccCccT44B.1.1.2630.006231
S25P25PccCccT44B.1.2060.003263
S25P25PccCccT44D.20.0003
S25P25PccCccT44P.1.140.000191
S25P25PccCccT33A0.001161
S25P25PccCccT33AY.1130.000427
S25P25PccCccT23AY.1200.000074
S25P25PccCccA13AY.1200.000037
S25P25PccCccT33AY.29.10.000662
S25P25PccCccG33AY.9.10.000251
S25P25PccCccT23B0.000256
S25P25PccCccA13B0.000128
S25P25PccCccT33B.1.1.2140.000166
S25P25PccCccT33B.1.1.2320.005445
S25P25PccCccT33B.1.1.250.001706
S25P25PccCccT33B.1.1.3160.002775
S25P25PccCccT33B.1.36.290.001552
S25P25PccCccT33B.1.4270.000151
S25P25PccCccT33B.1.4370.0625
S25P25PccCccT33B.1.5750.00091
S25P25PccCccT33B.1.6210.000266
S25P25PccCccT22AY.160.000759
S25P25PccCccT22AY.230.000139
S25P25PccCccT22AY.450.000243
S25P25PccCccT22AY.46.60.000144
S25P25PccCccT22AY.550.001835
S25P25PccCccT22AY.690.000373
S25P25PccCccT22AY.980.000158
S25P25PccCccT22B.1.1.2410.004141
S25P25PccCccT22B.1.1.2840.000215
S25P25PccCccT22B.1.1.3060.000877
S25P25PccCccT22B.1.1.630.000772
S25P25PccCccT22B.1.177.70.00033
S25P25PccCccT22B.1.177.860.000367
S25P25PccCccT22B.1.2400.000431
S25P25PccCccT22B.1.3460.002621
S25P25PccCccT22B.1.3690.00057
S25P25PccCccT22B.1.5250.000226
S25P25PccCccT22B.1.617.10.000258
S25P25PccCccT11A.180.05
S25P25PccCccT11A.2.50.000499
S25P25PccCccT11A.23.10.000704
S25P25PccCccT11A.60.005128
S25P25PccCccT11AY.1010.00049
S25P25PccCccT11AY.1060.000335
S25P25PccCccT11AY.116.10.000311
S25P25PccCccT11AY.1170.000085
S25P25PccCccT11AY.270.000065
S25P25PccCccG11AY.380.000499
S25P25PccCccT11AY.39.10.00004
S25P25PccCccA11AY.39.20.001541
S25P25PccCccT11AY.4.2.10.000149
S25P25PccCccT11AY.400.000964
S25P25PccCccT11AY.460.000104
S25P25PccCccT11AY.46.40.000165
S25P25PccCccT11AY.490.003195
S25P25PccCccT11AY.60.000041
S25P25PccCccT11AY.630.000387
S25P25PccCccT11AY.7.10.000113
S25P25PccCccT11AY.750.000056
S25P25PccCccT11AY.75.10.00018
S25P25PccCccT11AY.840.000437
S25P25PccCccT11AY.850.000427
S25P25PccCccT11AY.900.000684
S25P25PccCccT11AY.930.000273
S25P25PccCccT11B.1.1.10.000327
S25P25PccCccT11B.1.1.1920.002309
S25P25PccCccT11B.1.1.1980.001468
S25P25PccCccT11B.1.1.2270.004348
S25P25PccCccT11B.1.1.2400.004695
S25P25PccCccT11B.1.1.2770.000759
S25P25PccCccT11B.1.1.2940.001266
S25P25PccCccT11B.1.1.3110.000358
S25P25PccCccT11B.1.1.330.000421
S25P25PccCccT11B.1.1.3440.010753
S25P25PccCccT11B.1.1.3480.000796
S25P25PccCccA11B.1.1.3800.009804
S25P25PccCccT11B.1.1.500.000679
S25P25PccCccT11B.1.1.5170.006803
S25P25PccCccT11B.1.1050.009615
S25P25PccCccT11B.1.1100.004525
S25P25PccCccT11B.1.1110.001175
S25P25PccCccT11B.1.1190.010526
S25P25PccCccT11B.1.1490.003425
S25P25PccCccT11B.1.177.120.000152
S25P25PccCccT11B.1.177.170.000821
S25P25PccCccT11B.1.177.570.000281
S25P25PccCccT11B.1.177.60.000977
S25P25PccCccT11B.1.177.600.000218
S25P25PccCccT11B.1.177.840.006667
S25P25PccCccT11B.1.2410.000812
S25P25PccCccT11B.1.258.140.00098
S25P25PccCccT11B.1.258.70.001912
S25P25PccCccT11B.1.351.20.000303
S25P25PccCccT11B.1.36.80.001
S25P25PccCccT11B.1.3610.001289
S25P25PccCccT11B.1.3670.000792
S25P25PccCccT11B.1.4000.000429
S25P25PccCccT11B.1.4480.002625
S25P25PccCccA11B.1.4590.004082
S25P25PccCccT11B.1.466.20.000391
S25P25PccCccT11B.1.4670.04
S25P25PccCccT11B.1.4700.001404
S25P25PccCccT11B.1.5170.000427
S25P25PccCccT11B.1.5230.002451
S25P25PccCccT11B.1.5640.000426
S25P25PccCccT11B.1.5650.00081
S25P25PccCccG11B.1.5820.000491
S25P25PccCccA11B.1.5950.000261
S25P25PccCccT11B.1.596.10.009346
S25P25PccCccT11B.1.6090.000479
S25P25PccCccT11B.1.80.001972
S25P25PccCccT11B.130.045455
S25P25PccCccA11B.400.000364
S25P25PccCccT11P.1.10.000318
S25P25PccCccT11P.1.100.000269
S25P25PccCccT11P.1.40.000977
S25P25PccCccT11Q.10.000126
S25P25PccCccT11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.