CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = P25L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S25P25LnonsyncCccTc157415660.99491721635-21637
S25P25LnonsyncCCcTT157450.0031766221635-21637
S25P25LnonsyncCCcTA157420.0012706521635-21637
S25P25LnonsynCCCTTA157410.00063532421635-21637

Details of the mutation P25L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S25P25LcCccTc15661574All0.0003
S25P25LcCCcTT51574All0.000001
S25P25LcCCcTA21574All0
S25P25LCCCTTA11574All0
S25P25LcCccTc417418B.1.1.70.000373
S25P25LCCCTTA1418B.1.1.70.000001
S25P25LcCccTc195195AY.40.000304
S25P25LcCccTc116116C.1.20.493617
S25P25LcCccTc8787B.1.1600.002713
S25P25LcCccTc5555B.1.3510.001635
S25P25LcCccTc4545B.1.617.20.000169
S25P25LcCccTc4040AY.430.000177
S25P25LcCccTc3232AY.1030.000199
S25P25LcCccTc3232AY.250.000192
S25P25LcCccTc3131AY.440.000189
S25P25LcCccTc3030B.1.20.000264
S25P25LcCccTc2828AY.1200.001041
S25P25LcCccTc2828AY.200.001088
S25P25LcCccTc2121B.1.1770.000277
S25P25LcCccTc2020AY.450.002434
S25P25LcCccTc1818B.10.000165
S25P25LcCccTc1515AY.290.000237
S25P25LcCccTc1515B.1.214.20.008993
S25P25LcCccTc1515P.10.000236
S25P25LcCccTc1414C.36.3.10.038043
S25P25LcCccTc1313B.1.10.000236
S25P25LcCccTc1212AY.30.000119
S25P25LcCccTc1212B.1.1.630.00463
S25P25LcCccTc1111AY.3.10.000938
S25P25LcCccTc1010AY.1020.000265
S25P25LcCccTc99AY.910.006574
S25P25LcCccTc99B.1.177.860.001651
S25P25LcCccTc88AY.470.000249
S25P25LcCccTc77AY.1110.001282
S25P25LcCccTc77AY.390.000173
S25P25LcCccTc77B.1.1.2140.000388
S25P25LcCccTc77B.1.4290.000165
S25P25LcCccTc66AY.140.000528
S25P25LcCccTc66B.1.2580.000399
S25P25LcCccTc66B.1.3690.001711
S25P25LcCccTc66P.1.10.001906
S25P25LcCccTc66P.1.140.000287
S25P25LcCccTc55AY.1170.000423
S25P25LcCccTc55B.1.1.5190.000199
S25P25LcCccTc55P.1.130.004492
S25P25LcCCcTA240.111111
S25P25LcCCcTT240.111111
S25P25LcCccTc44AY.1100.000451
S25P25LcCccTc44AY.370.001264
S25P25LcCccTc44AY.39.10.000158
S25P25LcCccTc44B.1.1.330.001684
S25P25LcCccTc44B.1.5260.000094
S25P25LcCccTc33A0.001161
S25P25LcCccTc33AY.360.000445
S25P25LcCccTc33AY.50.000062
S25P25LcCccTc33AY.590.001589
S25P25LcCccTc33AY.99.20.000276
S25P25LcCccTc33B.1.1.1760.001318
S25P25LcCCcTT33B.1.1.370.000579
S25P25LcCccTc33C.370.000348
S25P25LcCccTc22AY.1000.000092
S25P25LcCccTc22AY.230.000139
S25P25LcCccTc22AY.330.000134
S25P25LcCccTc22AY.4.20.000043
S25P25LcCccTc22AY.460.000208
S25P25LcCccTc22AY.480.00093
S25P25LcCccTc22AY.60.000082
S25P25LcCccTc22AY.90.000135
S25P25LcCccTc22B.1.1.700.000682
S25P25LcCccTc22B.1.1.710.012121
S25P25LcCccTc22B.1.1110.00235
S25P25LcCccTc22B.1.177.170.001642
S25P25LcCccTc22B.1.177.70.00033
S25P25LcCccTc22B.1.2340.000264
S25P25LcCccTc22B.1.2430.000139
S25P25LcCccTc22B.1.3110.000549
S25P25LcCccTc22B.1.351.20.000605
S25P25LcCccTc22B.1.5250.000226
S25P25LcCccTc22B.1.5960.000174
S25P25LcCccTc22B.1.6370.000146
S25P25LcCccTc22C.36.30.001134
S25P25LcCccTc22P.1.120.000968
S25P25LcCccTc22P.20.000373
S25P25LcCccTc22U.30.007722
S25P25LcCccTc11A.2.50.000499
S25P25LcCccTc11AD.20.000219
S25P25LcCccTc11AU.20.002421
S25P25LcCccTc11AY.1010.00049
S25P25LcCccTc11AY.116.10.000311
S25P25LcCccTc11AY.1190.000035
S25P25LcCccTc11AY.120.000316
S25P25LcCccTc11AY.120.10.000321
S25P25LcCccTc11AY.1210.000135
S25P25LcCccTc11AY.130.000161
S25P25LcCccTc11AY.16.10.00047
S25P25LcCccTc11AY.23.10.000417
S25P25LcCccTc11AY.260.000028
S25P25LcCccTc11AY.270.000065
S25P25LcCccTc11AY.340.000097
S25P25LcCccTc11AY.380.000499
S25P25LcCccTc11AY.420.00004
S25P25LcCccTc11AY.46.20.000635
S25P25LcCccTc11AY.46.40.000165
S25P25LcCccTc11AY.46.50.000198
S25P25LcCccTc11AY.490.003195
S25P25LcCccTc11AY.5.20.002463
S25P25LcCccTc11AY.5.40.000277
S25P25LcCccTc11AY.70.000196
S25P25LcCccTc11AY.750.000056
S25P25LcCccTc11AY.80.000606
S25P25LcCccTc11AY.880.000884
S25P25LcCccTc11AY.9.20.000037
S25P25LcCccTc11AY.930.000273
S25P25LcCccTc11AY.980.000079
S25P25LcCccTc11AY.98.10.000048
S25P25LcCccTc11AY.990.001049
S25P25LcCccTc11B.1.1.10.000327
S25P25LcCccTc11B.1.1.1800.010753
S25P25LcCccTc11B.1.1.2610.008621
S25P25LcCccTc11B.1.1.3720.000689
S25P25LcCccTc11B.1.1.3910.008547
S25P25LcCccTc11B.1.1.4340.000349
S25P25LcCccTc11B.1.1270.002198
S25P25LcCccTc11B.1.177.150.000631
S25P25LcCccTc11B.1.177.580.001332
S25P25LcCccTc11B.1.177.600.000218
S25P25LcCccTc11B.1.2210.000071
S25P25LcCccTc11B.1.258.170.000104
S25P25LcCccTc11B.1.2650.001271
S25P25LcCccTc11B.1.3290.000608
S25P25LcCccTc11B.1.36.10.00114
S25P25LcCccTc11B.1.36.310.001751
S25P25LcCccTc11B.1.3960.000706
S25P25LcCccTc11B.1.4360.001029
S25P25LcCccTc11B.1.438.10.000107
S25P25LcCccTc11B.1.4700.001404
S25P25LcCccTc11B.1.5610.000397
S25P25LcCccTc11B.1.5760.000907
S25P25LcCccTc11B.1.617.10.000129
S25P25LcCccTc11B.1.6210.000089
S25P25LcCccTc11B.230.002924
S25P25LcCccTc11B.60.00091
S25P25LcCccTc11C.10.002392
S25P25LcCccTc11C.350.000774
S25P25LcCccTc11D.20.000075
S25P25LcCccTc11P.1.150.000232
S25P25LcCccTc11P.1.70.000319
S25P25LcCccTc11Q.10.000126
S25P25LcCccTc11Q.40.000455
S25P25LcCccTc11R.10.00009