CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = P230T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S230P230TnonsynCcAAcG50250.522250-22252
S230P230TnonsynCcaAca50140.2822250-22252
S230P230TnonsynCcAAcC50110.2222250-22252

Details of the mutation P230T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S230P230TCcAAcG2550All0.000005
S230P230TCcaAca1450All0.000003
S230P230TCcAAcC1150All0.000002
S230P230TCcAAcG2133P.10.000331
S230P230TCcAAcC1033P.10.000158
S230P230TCcaAca233P.10.000032
S230P230TCcAAcG24B.1.1.280.000622
S230P230TCcAAcC14B.1.1.280.000311
S230P230TCcaAca14B.1.1.280.000311
S230P230TCcAAcG12P.1.20.001156
S230P230TCcaAca12P.1.20.001156
S230P230TCcaAca11AY.200.000039
S230P230TCcaAca11AY.390.000025
S230P230TCcaAca11AY.40.000002
S230P230TCcaAca11AY.420.00004
S230P230TCcaAca11AY.430.000004
S230P230TCcaAca11AY.690.000187
S230P230TCcaAca11AY.90.000068
S230P230TCcaAca11B.10.000009
S230P230TCcaAca11B.1.1.1860.003436
S230P230TCcaAca11B.1.20.000009
S230P230TCcAAcG11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.