CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = P230P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S230P230PsynccAccT6785150.75958722250-22252
S230P230PsynccAccG6781210.17846622250-22252
S230P230PsynccAccC678420.061946922250-22252

Details of the mutation P230P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S230P230PccAccT515678All0.000098
S230P230PccAccG121678All0.000023
S230P230PccAccC42678All0.000008
S230P230PccAccT238238B.1.221.40.991667
S230P230PccAccT111111B.1.2210.007885
S230P230PccAccG4046AY.1030.000248
S230P230PccAccT646AY.1030.000037
S230P230PccAccG2033P.10.000315
S230P230PccAccC1233P.10.000189
S230P230PccAccT133P.10.000016
S230P230PccAccG1224B.1.1.70.000011
S230P230PccAccT724B.1.1.70.000006
S230P230PccAccC524B.1.1.70.000004
S230P230PccAccT1318AY.40.00002
S230P230PccAccC418AY.40.000006
S230P230PccAccG118AY.40.000002
S230P230PccAccT1717AY.9.20.000624
S230P230PccAccT1315AY.430.000058
S230P230PccAccG215AY.430.000009
S230P230PccAccT1515B.1.1600.000468
S230P230PccAccT1012AY.250.00006
S230P230PccAccG212AY.250.000012
S230P230PccAccT712AY.440.000043
S230P230PccAccG512AY.440.00003
S230P230PccAccG1012B.1.10.000181
S230P230PccAccT212B.1.10.000036
S230P230PccAccT1111AY.390.000272
S230P230PccAccT711B.1.617.20.000026
S230P230PccAccG311B.1.617.20.000011
S230P230PccAccC111B.1.617.20.000004
S230P230PccAccG37B.10.000027
S230P230PccAccT37B.10.000027
S230P230PccAccC17B.10.000009
S230P230PccAccT56AY.1000.00023
S230P230PccAccG16AY.1000.000046
S230P230PccAccT56AY.1020.000133
S230P230PccAccG16AY.1020.000027
S230P230PccAccG66B.1.1.2160.005343
S230P230PccAccT66R.10.00054
S230P230PccAccC44AY.30.00004
S230P230PccAccT44AY.420.000161
S230P230PccAccT44B.1.20.000035
S230P230PccAccC33AY.1080.003308
S230P230PccAccC23AY.1190.000071
S230P230PccAccT13AY.1190.000035
S230P230PccAccT33AY.60.000123
S230P230PccAccG23B.1.1.280.000622
S230P230PccAccC13B.1.1.280.000311
S230P230PccAccC23B.1.6370.000146
S230P230PccAccT13B.1.6370.000073
S230P230PccAccG33B.400.001093
S230P230PccAccG33P.20.00056
S230P230PccAccC120.055556
S230P230PccAccT120.055556
S230P230PccAccC22AY.1050.001286
S230P230PccAccT22AY.4.20.000043
S230P230PccAccT22AY.460.000208
S230P230PccAccG22AY.46.60.000144
S230P230PccAccC22B.1.1.330.000842
S230P230PccAccC12B.1.1770.000013
S230P230PccAccT12B.1.1770.000013
S230P230PccAccT22B.1.36.380.003284
S230P230PccAccT22B.1.4290.000047
S230P230PccAccG12B.1.910.002075
S230P230PccAccC12B.1.910.002075
S230P230PccAccT22P.1.60.003891
S230P230PccAccT11A.2.50.000499
S230P230PccAccT11AY.160.00038
S230P230PccAccT11AY.300.000396
S230P230PccAccT11AY.610.000105
S230P230PccAccG11AY.7.20.000559
S230P230PccAccT11B.1.1.250.000569
S230P230PccAccG11B.1.1.2610.008621
S230P230PccAccT11B.1.1280.000635
S230P230PccAccT11B.1.177.100.000878
S230P230PccAccT11B.1.36.170.000494
S230P230PccAccT11B.1.3690.000285
S230P230PccAccT11B.1.5640.000426
S230P230PccAccT11B.1.619.10.000641
S230P230PccAccT11B.1.621.10.000506
S230P230PccAccT11B.100.008264
S230P230PccAccG11P.1.170.000162
S230P230PccAccG11P.1.20.001156

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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