CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = P1263P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1263P1263PsynccAccG12028210.68302825349-25351
S1263P1263PsynccAccC12022530.21048325349-25351
S1263P1263PsynccAccT12021280.10648925349-25351

Details of the mutation P1263P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1263P1263PccAccG8211202All0.000157
S1263P1263PccAccC2531202All0.000048
S1263P1263PccAccT1281202All0.000024
S1263P1263PccAccG654661AY.250.003934
S1263P1263PccAccT7661AY.250.000042
S1263P1263PccAccC113128AY.40.000176
S1263P1263PccAccG12128AY.40.000019
S1263P1263PccAccT3128AY.40.000005
S1263P1263PccAccC78111B.1.1.70.00007
S1263P1263PccAccG20111B.1.1.70.000018
S1263P1263PccAccT13111B.1.1.70.000012
S1263P1263PccAccT1431B.1.617.20.000053
S1263P1263PccAccG1431B.1.617.20.000053
S1263P1263PccAccC331B.1.617.20.000011
S1263P1263PccAccT1219AY.430.000053
S1263P1263PccAccC419AY.430.000018
S1263P1263PccAccG319AY.430.000013
S1263P1263PccAccT817AY.440.000049
S1263P1263PccAccG817AY.440.000049
S1263P1263PccAccC117AY.440.000006
S1263P1263PccAccG1517B.1.20.000132
S1263P1263PccAccC217B.1.20.000018
S1263P1263PccAccC1515B.1.4990.015756
S1263P1263PccAccG813AY.30.00008
S1263P1263PccAccC313AY.30.00003
S1263P1263PccAccT213AY.30.00002
S1263P1263PccAccG611B.10.000055
S1263P1263PccAccC411B.10.000037
S1263P1263PccAccT111B.10.000009
S1263P1263PccAccC59AY.1030.000031
S1263P1263PccAccG39AY.1030.000019
S1263P1263PccAccT19AY.1030.000006
S1263P1263PccAccG89AY.230.000558
S1263P1263PccAccC19AY.230.00007
S1263P1263PccAccG69AY.390.000148
S1263P1263PccAccT39AY.390.000074
S1263P1263PccAccG57AY.1020.000133
S1263P1263PccAccT27AY.1020.000053
S1263P1263PccAccC77B.1.1.4480.014228
S1263P1263PccAccT77B.1.5260.000165
S1263P1263PccAccG77P.10.00011
S1263P1263PccAccG46B.1.10.000073
S1263P1263PccAccT26B.1.10.000036
S1263P1263PccAccT66B.1.1.700.002046
S1263P1263PccAccC66B.1.499.10.666667
S1263P1263PccAccG55AY.1190.000177
S1263P1263PccAccC25AY.260.000057
S1263P1263PccAccG25AY.260.000057
S1263P1263PccAccT15AY.260.000028
S1263P1263PccAccT55AY.460.00052
S1263P1263PccAccG35B.1.617.10.000387
S1263P1263PccAccT25B.1.617.10.000258
S1263P1263PccAccG44AY.240.001724
S1263P1263PccAccT44AY.290.000063
S1263P1263PccAccG24AY.330.000134
S1263P1263PccAccT24AY.330.000134
S1263P1263PccAccG34AY.450.000365
S1263P1263PccAccC14AY.450.000122
S1263P1263PccAccG44AY.5.30.00135
S1263P1263PccAccT44AY.98.10.000194
S1263P1263PccAccT33AY.1170.000254
S1263P1263PccAccG33AY.200.000117
S1263P1263PccAccG33AY.820.004071
S1263P1263PccAccT23B.1.1770.000026
S1263P1263PccAccC13B.1.1770.000013
S1263P1263PccAccT33B.1.2210.000213
S1263P1263PccAccT33B.1.438.10.000322
S1263P1263PccAccG12AY.1130.000142
S1263P1263PccAccC12AY.1130.000142
S1263P1263PccAccG22AY.1180.000125
S1263P1263PccAccT22AY.470.000062
S1263P1263PccAccG22AY.650.001066
S1263P1263PccAccG22B.1.1.390.001019
S1263P1263PccAccT22B.1.110.30.001437
S1263P1263PccAccC12B.1.4290.000024
S1263P1263PccAccT12B.1.4290.000024
S1263P1263PccAccG22C.10.004785
S1263P1263PccAccG11AY.1140.000231
S1263P1263PccAccT11AY.1200.000037
S1263P1263PccAccT11AY.20.000356
S1263P1263PccAccT11AY.270.000065
S1263P1263PccAccC11AY.3.10.000085
S1263P1263PccAccG11AY.340.000097
S1263P1263PccAccG11AY.4.20.000022
S1263P1263PccAccC11AY.420.00004
S1263P1263PccAccG11AY.46.40.000165
S1263P1263PccAccT11AY.50.000021
S1263P1263PccAccG11AY.840.000437
S1263P1263PccAccC11AY.920.000287
S1263P1263PccAccT11AY.99.20.000092
S1263P1263PccAccC11B.1.1.2140.000055
S1263P1263PccAccG11B.1.1.280.000311
S1263P1263PccAccG11B.1.1.5190.00004
S1263P1263PccAccT11B.1.1120.005181
S1263P1263PccAccT11B.1.1460.004237
S1263P1263PccAccT11B.1.2220.001692
S1263P1263PccAccT11B.1.2340.000132
S1263P1263PccAccG11B.1.2580.000067
S1263P1263PccAccT11B.1.3510.00003
S1263P1263PccAccC11B.1.351.20.000303
S1263P1263PccAccT11B.1.466.20.000391
S1263P1263PccAccT11B.1.6300.005236
S1263P1263PccAccG11P.1.120.000484
S1263P1263PccAccG11P.40.003802
S1263P1263PccAccT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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