CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = P1263L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1263P1263LnonsyncCacTa718971690.99721825349-25351
S1263P1263LnonsynCCaTTa718990.0012519125349-25351
S1263P1263LnonsyncCAcTC718960.00083460825349-25351
S1263P1263LnonsynCCATTG718930.00041730425349-25351
S1263P1263LnonsyncCAcTT718920.00027820325349-25351

Details of the mutation P1263L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1263P1263LcCacTa71697189All0.001371
S1263P1263LCCaTTa97189All0.000002
S1263P1263LcCAcTC67189All0.000001
S1263P1263LCCATTG37189All0.000001
S1263P1263LcCAcTT27189All0
S1263P1263LcCacTa11381138B.1.1.70.001019
S1263P1263LcCacTa924924AY.40.001438
S1263P1263LcCacTa807812B.10.007392
S1263P1263LCCaTTa5812B.10.000046
S1263P1263LcCacTa464467B.1.617.20.001747
S1263P1263LCCaTTa2467B.1.617.20.000008
S1263P1263LcCAcTT1467B.1.617.20.000004
S1263P1263LcCacTa353353AY.250.002123
S1263P1263LcCacTa218219AY.440.001327
S1263P1263LCCATTG1219AY.440.000006
S1263P1263LcCacTa196196AY.430.000868
S1263P1263LcCacTa176176AY.60.007239
S1263P1263LcCacTa170171B.1.4290.004
S1263P1263LcCAcTT1171B.1.4290.000024
S1263P1263LcCacTa143143AY.34.10.072922
S1263P1263LcCacTa122122AY.1030.000758
S1263P1263LcCacTa103103B.1.20.000907
S1263P1263LcCacTa102102P.10.001607
S1263P1263LcCacTa9696AY.30.000955
S1263P1263LcCacTa9595AY.390.002348
S1263P1263LcCacTa8888AY.1020.002333
S1263P1263LcCacTa7070B.1.1770.000922
S1263P1263LcCacTa6767P.1.170.010838
S1263P1263LcCacTa6666AY.360.009782
S1263P1263LcCacTa6666B.1.1.5190.002621
S1263P1263LcCacTa6666B.1.5521
S1263P1263LcCacTa6060B.1.3510.001784
S1263P1263LcCacTa5757AY.39.10.002258
S1263P1263LcCacTa5353B.1.10.000961
S1263P1263LcCacTa5050B.1.1.3690.022311
S1263P1263LcCacTa4949AY.260.001387
S1263P1263LcCacTa4949B.1.5250.005545
S1263P1263LcCacTa4343AY.750.002409
S1263P1263LcCacTa4141AY.330.002738
S1263P1263LcCacTa3434P.1.10.010801
S1263P1263LcCacTa3232AY.1190.00113
S1263P1263LcCacTa3232B.1.5260.000752
S1263P1263LcCacTa3030B.1.1600.000936
S1263P1263LcCacTa2727AY.1210.003654
S1263P1263LcCacTa2727B.1.1.2840.0029
S1263P1263LcCacTa2626B.1.2430.001809
S1263P1263LcCacTa2626B.1.438.10.002789
S1263P1263LcCacTa2626Q.20.015951
S1263P1263LcCacTa2323AY.200.000894
S1263P1263LcCacTa2323AY.290.000363
S1263P1263LcCacTa2222AY.4.20.000477
S1263P1263LcCacTa2222AY.420.000885
S1263P1263LcCacTa2222AY.470.000684
S1263P1263LcCacTa2121B.1.2580.001397
S1263P1263LcCacTa1919B.1.4270.000959
S1263P1263LcCacTa1818AY.1200.000669
S1263P1263LcCacTa1818AY.4.50.001935
S1263P1263LcCacTa1818AY.740.002082
S1263P1263LcCacTa1717P.20.003173
S1263P1263LcCacTa1616B.1.5960.001394
S1263P1263LcCacTa1414B.1.258.170.001456
S1263P1263LcCacTa1313AY.450.001582
S1263P1263LcCacTa1313AY.550.011927
S1263P1263LcCacTa1313C.370.001509
S1263P1263LcCacTa1212AY.1130.001709
S1263P1263LcCacTa1212AY.230.000837
S1263P1263LcCacTa1212AY.50.000248
S1263P1263LcCacTa1212AY.9.20.000441
S1263P1263LcCacTa1212B.1.5510.015484
S1263P1263LcCacTa1212B.1.617.10.001548
S1263P1263LcCacTa1111AY.1000.000506
S1263P1263LcCacTa1111AY.1180.000689
S1263P1263LcCacTa1111AY.610.001153
S1263P1263LcCacTa1111B.1.177.600.002403
S1263P1263LcCacTa1111P.60.034591
S1263P1263LcCacTa1010AY.1070.00466
S1263P1263LcCacTa1010B.1.2210.00071
S1263P1263LcCacTa1010B.1.6370.000731
S1263P1263LcCacTa99AY.980.000711
S1263P1263LcCacTa99B.1.1.2310.027864
S1263P1263LcCacTa99B.1.5750.002731
S1263P1263LcCacTa99B.1.6210.000797
S1263P1263LcCacTa99C.36.30.005105
S1263P1263LcCacTa88AY.20.002849
S1263P1263LcCacTa88AY.880.007073
S1263P1263LcCacTa88B.1.1.2140.000444
S1263P1263LcCacTa88B.1.6250.018824
S1263P1263LcCacTa77AY.1170.000592
S1263P1263LcCacTa77AY.98.10.000339
S1263P1263LcCacTa77B0.000895
S1263P1263LcCacTa77B.1.351.30.006135
S1263P1263LcCacTa77B.1.466.20.002739
S1263P1263LcCAcTC67B.1.6190.005226
S1263P1263LcCacTa17B.1.6190.000871
S1263P1263LcCacTa66AY.340.000582
S1263P1263LcCacTa66AY.70.001176
S1263P1263LcCacTa66B.1.177.40.001266
S1263P1263LcCacTa66B.1.3620.009245
S1263P1263LcCacTa66P.1.140.000287
S1263P1263LcCacTa55A.10.001409
S1263P1263LcCacTa55A.280.013228
S1263P1263LcCacTa55AY.130.000805
S1263P1263LcCacTa55AY.3.10.000426
S1263P1263LcCacTa55AY.460.00052
S1263P1263LcCacTa55AY.7.10.000564
S1263P1263LcCacTa55AY.700.001043
S1263P1263LcCacTa55AY.720.006803
S1263P1263LcCacTa55AY.840.002187
S1263P1263LcCacTa55AY.9.10.000419
S1263P1263LcCacTa55AY.99.20.000461
S1263P1263LcCacTa55B.1.1.4330.007123
S1263P1263LcCacTa55B.1.1.560.089286
S1263P1263LcCacTa55B.1.360.00073
S1263P1263LcCacTa55B.1.36.290.002587
S1263P1263LcCacTa55B.1.4150.071429
S1263P1263LcCacTa55C.230.02907
S1263P1263LcCacTa55D.20.000375
S1263P1263LcCacTa55P.1.150.001162
S1263P1263LcCacTa55Q.10.000632
S1263P1263LcCacTa44AY.1160.001147
S1263P1263LcCacTa44AY.140.000352
S1263P1263LcCacTa44AY.370.001264
S1263P1263LcCacTa24AY.46.20.001271
S1263P1263LCCATTG24AY.46.20.001271
S1263P1263LcCacTa44AY.540.000381
S1263P1263LcCacTa44AY.75.10.000721
S1263P1263LcCacTa44B.1.177.120.000607
S1263P1263LcCacTa44B.1.177.860.000734
S1263P1263LcCacTa44B.1.2400.000862
S1263P1263LcCacTa44B.1.3340.072727
S1263P1263LcCacTa33AE.80.001467
S1263P1263LcCacTa33AY.1080.003308
S1263P1263LcCacTa33AY.120.10.000963
S1263P1263LcCacTa33AY.16.10.00141
S1263P1263LcCacTa33AY.270.000194
S1263P1263LcCacTa33AY.46.50.000595
S1263P1263LcCacTa33AY.860.00249
S1263P1263LcCacTa33AY.920.000862
S1263P1263LcCacTa33B.1.1.2070.003546
S1263P1263LcCacTa33B.1.1.2790.003363
S1263P1263LcCacTa33B.1.1.3620.016854
S1263P1263LcCacTa33B.1.1.370.000579
S1263P1263LcCacTa33B.1.1.4320.003797
S1263P1263LcCacTa33B.1.1.4340.001046
S1263P1263LcCacTa33B.1.1.630.001157
S1263P1263LcCacTa33B.1.1390.002199
S1263P1263LcCacTa33B.1.1420.008696
S1263P1263LcCacTa33B.1.36.170.001482
S1263P1263LcCacTa33B.1.5680.003333
S1263P1263LcCacTa33P.1.100.000808
S1263P1263LcCacTa33P.1.20.003468
S1263P1263LcCacTa33W.10.026087
S1263P1263LcCacTa22AD.20.000438
S1263P1263LcCacTa22AY.1060.00067
S1263P1263LcCacTa22AY.1150.010417
S1263P1263LcCacTa22AY.160.000759
S1263P1263LcCacTa22AY.46.60.000144
S1263P1263LcCacTa22AY.5.40.000553
S1263P1263LcCacTa22AY.510.001818
S1263P1263LcCacTa22AY.620.000871
S1263P1263LcCacTa22AY.640.00119
S1263P1263LcCacTa22AY.650.001066
S1263P1263LcCacTa22AY.990.002099
S1263P1263LcCacTa22AZ.40.006711
S1263P1263LcCacTa22B.1.1.1130.013986
S1263P1263LcCacTa22B.1.1.30.017391
S1263P1263LcCacTa22B.1.1.3180.000604
S1263P1263LCCaTTa12B.1.1.4090.002833
S1263P1263LcCacTa12B.1.1.4090.002833
S1263P1263LcCacTa22B.1.1470.001512
S1263P1263LcCacTa22B.1.177.200.003035
S1263P1263LcCacTa22B.1.177.570.000562
S1263P1263LcCacTa22B.1.177.820.000955
S1263P1263LcCacTa22B.1.1820.014493
S1263P1263LcCacTa22B.1.2320.001075
S1263P1263LcCacTa22B.1.2650.002541
S1263P1263LcCacTa22B.1.351.20.000605
S1263P1263LcCacTa22B.1.3690.00057
S1263P1263LcCacTa22B.1.4590.008163
S1263P1263LcCacTa22B.1.4740.003802
S1263P1263LcCacTa22B.1.5280.095238
S1263P1263LcCacTa22B.1.5950.000522
S1263P1263LcCacTa22B.400.000729
S1263P1263LcCacTa22B.430.028571
S1263P1263LcCacTa22C.220.142857
S1263P1263LcCacTa22P.1.120.000968
S1263P1263LcCacTa22P.1.70.000639
S1263P1263LcCacTa22Q.40.00091
S1263P1263LcCacTa22Q.80.00033
S1263P1263LcCacTa22R.10.00018
S1263P1263LcCacTa22W.20.009662
S1263P1263LcCacTa11A.2.50.000499
S1263P1263LcCacTa11AP.10.001502
S1263P1263LcCacTa11AY.110.001339
S1263P1263LcCacTa11AY.1110.000183
S1263P1263LcCacTa11AY.120.2.10.000498
S1263P1263LcCacTa11AY.23.10.000417
S1263P1263LcCacTa11AY.29.10.000221
S1263P1263LcCacTa11AY.320.000532
S1263P1263LcCacTa11AY.400.000964
S1263P1263LcCacTa11AY.46.40.000165
S1263P1263LcCacTa11AY.480.000465
S1263P1263LcCacTa11AY.5.30.000337
S1263P1263LcCacTa11AY.530.000288
S1263P1263LcCacTa11AY.590.00053
S1263P1263LcCacTa11AY.680.000274
S1263P1263LcCacTa11AY.690.000187
S1263P1263LcCacTa11AY.710.000475
S1263P1263LcCacTa11AY.730.000665
S1263P1263LcCacTa11AY.800.001129
S1263P1263LcCacTa11AY.820.001357
S1263P1263LcCacTa11AY.830.001724
S1263P1263LcCacTa11AY.850.000427
S1263P1263LcCacTa11AY.870.000833
S1263P1263LcCacTa11AY.890.004902
S1263P1263LcCacTa11AY.900.000684
S1263P1263LcCacTa11AY.910.00073
S1263P1263LcCacTa11AY.950.000761
S1263P1263LcCacTa11AY.99.10.001553
S1263P1263LcCacTa11AZ.50.003509
S1263P1263LcCacTa11B.1.1.1190.034483
S1263P1263LCCaTTa11B.1.1.1370.0125
S1263P1263LcCacTa11B.1.1.1920.002309
S1263P1263LcCacTa11B.1.1.2100.005714
S1263P1263LcCacTa11B.1.1.2160.00089
S1263P1263LcCacTa11B.1.1.2200.001859
S1263P1263LcCacTa11B.1.1.2320.001815
S1263P1263LcCacTa11B.1.1.2650.003155
S1263P1263LcCacTa11B.1.1.280.000311
S1263P1263LcCacTa11B.1.1.3170.000412
S1263P1263LcCacTa11B.1.1.3360.016667
S1263P1263LcCacTa11B.1.1.3880.045455
S1263P1263LcCacTa11B.1.1.4060.006494
S1263P1263LcCacTa11B.1.1.480.002874
S1263P1263LcCacTa11B.1.1.5180.006329
S1263P1263LcCacTa11B.1.1.5230.001563
S1263P1263LcCacTa11B.1.1.5280.004808
S1263P1263LcCacTa11B.1.110.30.000718
S1263P1263LcCacTa11B.1.1110.001175
S1263P1263LcCacTa11B.1.1280.000635
S1263P1263LcCacTa11B.1.160.320.004292
S1263P1263LcCacTa11B.1.177.160.000664
S1263P1263LcCacTa11B.1.177.170.000821
S1263P1263LcCacTa11B.1.177.210.000076
S1263P1263LcCacTa11B.1.177.240.001295
S1263P1263LcCacTa11B.1.177.320.00135
S1263P1263LcCacTa11B.1.177.440.000519
S1263P1263LcCacTa11B.1.177.50.001242
S1263P1263LcCacTa11B.1.177.730.000566
S1263P1263LcCacTa11B.1.177.810.000189
S1263P1263LcCacTa11B.1.2010.005682
S1263P1263LcCacTa11B.1.2060.000816
S1263P1263LcCacTa11B.1.2290.009709
S1263P1263LcCacTa11B.1.2340.000132
S1263P1263LcCacTa11B.1.2360.002053
S1263P1263LcCacTa11B.1.2410.000812
S1263P1263LcCacTa11B.1.2600.003344
S1263P1263LcCacTa11B.1.3110.000275
S1263P1263LcCacTa11B.1.3190.003049
S1263P1263LcCacTa11B.1.3200.001245
S1263P1263LcCacTa11B.1.3360.002439
S1263P1263LcCacTa11B.1.3490.000715
S1263P1263LcCacTa11B.1.36.100.004785
S1263P1263LcCacTa11B.1.36.180.00042
S1263P1263LcCacTa11B.1.36.270.000763
S1263P1263LcCacTa11B.1.36.310.001751
S1263P1263LcCacTa11B.1.36.80.001
S1263P1263LcCacTa11B.1.4080.00369
S1263P1263LcCacTa11B.1.4110.003704
S1263P1263LcCacTa11B.1.4130.004255
S1263P1263LcCacTa11B.1.4220.000812
S1263P1263LcCacTa11B.1.4240.008065
S1263P1263LcCacTa11B.1.4280.00102
S1263P1263LcCacTa11B.1.4410.009615
S1263P1263LcCacTa11B.1.4420.035714
S1263P1263LcCacTa11B.1.4970.000315
S1263P1263LcCacTa11B.1.5400.009709
S1263P1263LcCacTa11B.1.5640.000426
S1263P1263LcCacTa11B.1.5670.003333
S1263P1263LcCacTa11B.1.5760.000907
S1263P1263LcCacTa11B.1.5800.004065
S1263P1263LcCacTa11B.1.6000.005848
S1263P1263LcCacTa11B.1.6090.000479
S1263P1263LcCacTa11B.1.621.10.000506
S1263P1263LcCacTa11B.1.6260.005714
S1263P1263LcCacTa11B.1.6280.000352
S1263P1263LcCacTa11B.4.70.010101
S1263P1263LcCacTa11B.6.30.026316
S1263P1263LcCacTa11B.6.60.000889
S1263P1263LcCacTa11C.1.10.076923
S1263P1263LcCacTa11C.140.004329
S1263P1263LcCacTa11C.160.00106
S1263P1263LcCacTa11C.180.002591
S1263P1263LcCacTa11N.50.001767
S1263P1263LcCacTa11P.1.130.000898
S1263P1263LcCacTa11P.1.160.000374
S1263P1263LcCacTa11Q.30.000145
S1263P1263LcCacTa11Y.10.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.