CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = P1162S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1162P1162SnonsynCcaTca1143911439125046-25048

Details of the mutation P1162S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1162P1162SCcaTca1143911439All0.002188
S1162P1162SCcaTca51595159AY.40.00803
S1162P1162SCcaTca17081708B.1.1.70.001529
S1162P1162SCcaTca397397B.1.177.410.9925
S1162P1162SCcaTca312312B.1.617.20.001175
S1162P1162SCcaTca263263AY.9.10.022019
S1162P1162SCcaTca244244B.10.002235
S1162P1162SCcaTca237237AY.390.005857
S1162P1162SCcaTca193193AY.90.013046
S1162P1162SCcaTca144144B.1.20.001268
S1162P1162SCcaTca138138AY.440.00084
S1162P1162SCcaTca136136AY.4.20.00295
S1162P1162SCcaTca128128AY.430.000567
S1162P1162SCcaTca126126AY.50.002602
S1162P1162SCcaTca9999B.1.36.180.041597
S1162P1162SCcaTca8686B.1.10.00156
S1162P1162SCcaTca7878AY.250.000469
S1162P1162SCcaTca7575AY.1030.000466
S1162P1162SCcaTca7373AY.920.020971
S1162P1162SCcaTca6868AY.740.007864
S1162P1162SCcaTca6565AY.30.000647
S1162P1162SCcaTca6161P.10.000961
S1162P1162SCcaTca5757AY.1020.001511
S1162P1162SCcaTca5656B.1.1770.000737
S1162P1162SCcaTca5454B.1.5260.001269
S1162P1162SCcaTca4949B.1.258.170.005095
S1162P1162SCcaTca4848B.1.1.3180.014484
S1162P1162SCcaTca4343B.1.5960.003747
S1162P1162SCcaTca4242B.1.1600.00131
S1162P1162SCcaTca3636AY.290.000568
S1162P1162SCcaTca3535B.1.1.5190.00139
S1162P1162SCcaTca3232B.1.36.360.019266
S1162P1162SCcaTca3131AY.1210.004195
S1162P1162SCcaTca3030B.1.351.20.009077
S1162P1162SCcaTca2828B.1.1.1980.041116
S1162P1162SCcaTca2727AY.1190.000953
S1162P1162SCcaTca2525B.1.1.2220.0051
S1162P1162SCcaTca2323B.1.3510.000684
S1162P1162SCcaTca2323P.1.140.001099
S1162P1162SCcaTca2121AY.980.001659
S1162P1162SCcaTca2020AY.1000.00092
S1162P1162SCcaTca2020AY.260.000566
S1162P1162SCcaTca2020B.1.3690.005705
S1162P1162SCcaTca1919B.1.1.2580.061889
S1162P1162SCcaTca1919B.1.6370.001388
S1162P1162SCcaTca1919P.1.100.00512
S1162P1162SCcaTca1818AY.4.2.10.002682
S1162P1162SCcaTca1818AY.470.00056
S1162P1162SCcaTca1818B.1.4290.000424
S1162P1162SCcaTca1818Q.10.002274
S1162P1162SCcaTca1717C.160.018028
S1162P1162SCcaTca1616AY.930.004369
S1162P1162SCcaTca1616B.1.1.370.003086
S1162P1162SCcaTca1616B.1.2430.001113
S1162P1162SCcaTca1616B.1.6210.001416
S1162P1162SCcaTca1414AY.1170.001183
S1162P1162SCcaTca1414AY.330.000935
S1162P1162SCcaTca1414B.1.5950.003653
S1162P1162SCcaTca1313AY.610.001362
S1162P1162SCcaTca1212AY.120.10.003852
S1162P1162SCcaTca1212AY.420.000483
S1162P1162SCcaTca1212B.1.5311
S1162P1162SCcaTca1111AY.23.10.004591
S1162P1162SCcaTca1111AY.300.004353
S1162P1162SCcaTca1111AY.99.20.001014
S1162P1162SCcaTca1010AY.46.60.000722
S1162P1162SCcaTca1010B.1.1.2140.000555
S1162P1162SCcaTca1010B.1.1.330.004209
S1162P1162SCcaTca1010C.370.001161
S1162P1162SCcaTca1010R.10.0009
S1162P1162SCcaTca99AY.1140.00208
S1162P1162SCcaTca99AY.1200.000335
S1162P1162SCcaTca99AY.350.002097
S1162P1162SCcaTca99AY.4.50.000967
S1162P1162SCcaTca99AY.9.20.000331
S1162P1162SCcaTca99AY.98.10.000436
S1162P1162SCcaTca99B.1.2210.000639
S1162P1162SCcaTca99B.1.466.20.003521
S1162P1162SCcaTca99Q.30.001305
S1162P1162SCcaTca88AY.450.000973
S1162P1162SCcaTca88B.1.4270.000404
S1162P1162SCcaTca77AY.1180.000439
S1162P1162SCcaTca77AY.200.000272
S1162P1162SCcaTca77AY.230.000488
S1162P1162SCcaTca77B.1.1.3850.03125
S1162P1162SCcaTca77B.1.6120.018568
S1162P1162SCcaTca77B.1.6280.002467
S1162P1162SCcaTca77Q.40.003183
S1162P1162SCcaTca66AY.370.001896
S1162P1162SCcaTca66AY.5.40.00166
S1162P1162SCcaTca66B.1.1.3680.018519
S1162P1162SCcaTca66B.1.221.30.005
S1162P1162SCcaTca66B.1.2390.007326
S1162P1162SCcaTca66C.10.014354
S1162P1162SCcaTca66C.36.30.003403
S1162P1162SCcaTca66D.20.00045
S1162P1162SCcaTca55AY.130.000805
S1162P1162SCcaTca55AY.3.10.000426
S1162P1162SCcaTca55AY.410.00147
S1162P1162SCcaTca55AY.46.40.000823
S1162P1162SCcaTca55AY.530.001438
S1162P1162SCcaTca55AY.940.002213
S1162P1162SCcaTca55B.1.1.280.001556
S1162P1162SCcaTca55B.1.177.210.000382
S1162P1162SCcaTca55B.1.360.00073
S1162P1162SCcaTca55B.1.36.100.023923
S1162P1162SCcaTca55B.1.617.10.000645
S1162P1162SCcaTca55P.20.000933
S1162P1162SCcaTca55W.40.006757
S1162P1162SCcaTca44AY.380.001997
S1162P1162SCcaTca44AY.5.30.00135
S1162P1162SCcaTca44AY.870.003331
S1162P1162SCcaTca44B.1.1.1530.004381
S1162P1162SCcaTca44B.1.1.2160.003562
S1162P1162SCcaTca44B.1.2340.000528
S1162P1162SCcaTca44B.1.5010.029412
S1162P1162SCcaTca44B.1.5230.009804
S1162P1162SCcaTca33AY.1100.000338
S1162P1162SCcaTca33AY.1130.000427
S1162P1162SCcaTca33AY.360.000445
S1162P1162SCcaTca33AY.39.10.000119
S1162P1162SCcaTca33AY.460.000312
S1162P1162SCcaTca33AY.46.20.001906
S1162P1162SCcaTca33AY.540.000286
S1162P1162SCcaTca33AY.680.000821
S1162P1162SCcaTca33AY.750.000168
S1162P1162SCcaTca33AY.840.001312
S1162P1162SCcaTca33AY.990.003148
S1162P1162SCcaTca33AZ.20.002463
S1162P1162SCcaTca33B.1.1.2630.004673
S1162P1162SCcaTca33B.1.1.3060.001315
S1162P1162SCcaTca33B.1.1.5230.004687
S1162P1162SCcaTca33B.1.1.630.001157
S1162P1162SCcaTca33B.1.1.700.001023
S1162P1162SCcaTca33B.1.110.30.002155
S1162P1162SCcaTca33B.1.1570.008955
S1162P1162SCcaTca33B.1.177.560.002003
S1162P1162SCcaTca33B.1.2400.000647
S1162P1162SCcaTca33B.1.2580.0002
S1162P1162SCcaTca33B.1.36.10.003421
S1162P1162SCcaTca33B.1.5640.001278
S1162P1162SCcaTca33B.1.6230.001609
S1162P1162SCcaTca33P.1.150.000697
S1162P1162SCcaTca22A0.000774
S1162P1162SCcaTca22A.10.000564
S1162P1162SCcaTca22A.290.010638
S1162P1162SCcaTca22AY.1060.00067
S1162P1162SCcaTca22AY.1090.001479
S1162P1162SCcaTca22AY.140.000176
S1162P1162SCcaTca22AY.270.000129
S1162P1162SCcaTca22AY.320.001065
S1162P1162SCcaTca22AY.520.001629
S1162P1162SCcaTca22AY.550.001835
S1162P1162SCcaTca22AY.620.000871
S1162P1162SCcaTca22AY.70.000392
S1162P1162SCcaTca22AY.720.002721
S1162P1162SCcaTca22AY.75.10.000361
S1162P1162SCcaTca22AY.890.009804
S1162P1162SCcaTca22AY.950.001522
S1162P1162SCcaTca22B0.000256
S1162P1162SCcaTca22B.1.1.10.000653
S1162P1162SCcaTca22B.1.1.1890.003026
S1162P1162SCcaTca22B.1.1.2790.002242
S1162P1162SCcaTca22B.1.1.340.026316
S1162P1162SCcaTca22B.1.1.500.001358
S1162P1162SCcaTca22B.1.1.520.02439
S1162P1162SCcaTca22B.1.160.260.004843
S1162P1162SCcaTca22B.1.177.120.000303
S1162P1162SCcaTca22B.1.177.170.001642
S1162P1162SCcaTca22B.1.177.70.00033
S1162P1162SCcaTca22B.1.177.730.001133
S1162P1162SCcaTca22B.1.3110.000549
S1162P1162SCcaTca22B.1.4710.005464
S1162P1162SCcaTca22B.1.5440.012048
S1162P1162SCcaTca22B.1.5750.000607
S1162P1162SCcaTca22B.1.6270.00404
S1162P1162SCcaTca22B.1.6310.006734
S1162P1162SCcaTca22C.350.001548
S1162P1162SCcaTca22P.1.70.000639
S1162P1162SCcaTca22P.30.00319
S1162P1162SCcaTca22P.70.008734
S1162P1162SCcaTca11A.2.5.10.004808
S1162P1162SCcaTca11AE.80.000489
S1162P1162SCcaTca11AH.30.003802
S1162P1162SCcaTca11AS.10.009524
S1162P1162SCcaTca11AY.1010.00049
S1162P1162SCcaTca11AY.1040.001984
S1162P1162SCcaTca11AY.1070.000466
S1162P1162SCcaTca11AY.1110.000183
S1162P1162SCcaTca11AY.120.000316
S1162P1162SCcaTca11AY.160.00038
S1162P1162SCcaTca11AY.16.10.00047
S1162P1162SCcaTca11AY.29.10.000221
S1162P1162SCcaTca11AY.310.018519
S1162P1162SCcaTca11AY.340.000097
S1162P1162SCcaTca11AY.39.20.001541
S1162P1162SCcaTca11AY.46.10.001027
S1162P1162SCcaTca11AY.46.50.000198
S1162P1162SCcaTca11AY.5.20.002463
S1162P1162SCcaTca11AY.570.000656
S1162P1162SCcaTca11AY.580.000907
S1162P1162SCcaTca11AY.60.000041
S1162P1162SCcaTca11AY.600.000938
S1162P1162SCcaTca11AY.700.000209
S1162P1162SCcaTca11AY.880.000884
S1162P1162SCcaTca11AY.900.000684
S1162P1162SCcaTca11AY.910.00073
S1162P1162SCcaTca11AZ.30.00152
S1162P1162SCcaTca11B.1.1.1290.009174
S1162P1162SCcaTca11B.1.1.1610.003534
S1162P1162SCcaTca11B.1.1.1710.003676
S1162P1162SCcaTca11B.1.1.2070.001182
S1162P1162SCcaTca11B.1.1.2530.002506
S1162P1162SCcaTca11B.1.1.2840.000107
S1162P1162SCcaTca11B.1.1.3170.000412
S1162P1162SCcaTca11B.1.1.3250.025641
S1162P1162SCcaTca11B.1.1.3330.001076
S1162P1162SCcaTca11B.1.1.3380.017241
S1162P1162SCcaTca11B.1.1.3720.000689
S1162P1162SCcaTca11B.1.1.4200.001006
S1162P1162SCcaTca11B.1.1.4330.001425
S1162P1162SCcaTca11B.1.1.4340.000349
S1162P1162SCcaTca11B.1.1.4350.034483
S1162P1162SCcaTca11B.1.1.510.001718
S1162P1162SCcaTca11B.1.1.580.005376
S1162P1162SCcaTca11B.1.1.80.003584
S1162P1162SCcaTca11B.1.1110.001175
S1162P1162SCcaTca11B.1.1390.000733
S1162P1162SCcaTca11B.1.160.320.004292
S1162P1162SCcaTca11B.1.177.160.000664
S1162P1162SCcaTca11B.1.177.230.003236
S1162P1162SCcaTca11B.1.177.40.000211
S1162P1162SCcaTca11B.1.177.450.000381
S1162P1162SCcaTca11B.1.177.530.002392
S1162P1162SCcaTca11B.1.177.570.000281
S1162P1162SCcaTca11B.1.177.600.000218
S1162P1162SCcaTca11B.1.177.810.000189
S1162P1162SCcaTca11B.1.177.870.000728
S1162P1162SCcaTca11B.1.1920.009259
S1162P1162SCcaTca11B.1.1950.005025
S1162P1162SCcaTca11B.1.214.20.0006
S1162P1162SCcaTca11B.1.221.10.002907
S1162P1162SCcaTca11B.1.2410.000812
S1162P1162SCcaTca11B.1.2650.001271
S1162P1162SCcaTca11B.1.30.002618
S1162P1162SCcaTca11B.1.351.30.000876
S1162P1162SCcaTca11B.1.3560.001727
S1162P1162SCcaTca11B.1.36.160.001425
S1162P1162SCcaTca11B.1.36.170.000494
S1162P1162SCcaTca11B.1.36.290.000517
S1162P1162SCcaTca11B.1.36.350.002604
S1162P1162SCcaTca11B.1.36.80.001
S1162P1162SCcaTca11B.1.3620.001541
S1162P1162SCcaTca11B.1.3710.001122
S1162P1162SCcaTca11B.1.3910.001127
S1162P1162SCcaTca11B.1.4000.000429
S1162P1162SCcaTca11B.1.4080.00369
S1162P1162SCcaTca11B.1.4090.000781
S1162P1162SCcaTca11B.1.416.10.001563
S1162P1162SCcaTca11B.1.428.20.033333
S1162P1162SCcaTca11B.1.429.10.012048
S1162P1162SCcaTca11B.1.438.10.000107
S1162P1162SCcaTca11B.1.4970.000315
S1162P1162SCcaTca11B.1.5250.000113
S1162P1162SCcaTca11B.1.5370.02
S1162P1162SCcaTca11B.1.5600.00463
S1162P1162SCcaTca11B.1.5610.000397
S1162P1162SCcaTca11B.1.5700.002941
S1162P1162SCcaTca11B.1.5740.002151
S1162P1162SCcaTca11B.1.5820.000491
S1162P1162SCcaTca11B.1.840.020833
S1162P1162SCcaTca11B.30.000831
S1162P1162SCcaTca11B.400.000364
S1162P1162SCcaTca11B.6.60.000889
S1162P1162SCcaTca11P.1.10.000318
S1162P1162SCcaTca11P.1.120.000484
S1162P1162SCcaTca11P.1.160.000374
S1162P1162SCcaTca11P.1.170.000162
S1162P1162SCcaTca11P.1.40.000977
S1162P1162SCcaTca11P.1.80.004785
S1162P1162SCcaTca11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.