CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = P1162P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1162P1162PsynccAccG11459200.80349325046-25048
S1162P1162PsynccAccT11451440.12576425046-25048
S1162P1162PsynccAccC1145810.070742425046-25048

Details of the mutation P1162P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1162P1162PccAccG9201145All0.000176
S1162P1162PccAccT1441145All0.000028
S1162P1162PccAccC811145All0.000015
S1162P1162PccAccG393397AY.250.002364
S1162P1162PccAccT4397AY.250.000024
S1162P1162PccAccG289289P.1.140.013815
S1162P1162PccAccC4392B.1.1.70.000038
S1162P1162PccAccG2892B.1.1.70.000025
S1162P1162PccAccT2192B.1.1.70.000019
S1162P1162PccAccG6969R.21
S1162P1162PccAccT3939B.1.4130.165957
S1162P1162PccAccG1932B.1.617.20.000072
S1162P1162PccAccT732B.1.617.20.000026
S1162P1162PccAccC632B.1.617.20.000023
S1162P1162PccAccC1718B.1.1770.000224
S1162P1162PccAccG118B.1.1770.000013
S1162P1162PccAccT815B.10.000073
S1162P1162PccAccG715B.10.000064
S1162P1162PccAccG712AY.440.000043
S1162P1162PccAccC412AY.440.000024
S1162P1162PccAccT112AY.440.000006
S1162P1162PccAccG1212B.1.1600.000374
S1162P1162PccAccT69AY.200.000233
S1162P1162PccAccC29AY.200.000078
S1162P1162PccAccG19AY.200.000039
S1162P1162PccAccT69AY.40.000009
S1162P1162PccAccG39AY.40.000005
S1162P1162PccAccT99B.400.003279
S1162P1162PccAccG78AY.430.000031
S1162P1162PccAccT18AY.430.000004
S1162P1162PccAccG36AY.30.00003
S1162P1162PccAccT36AY.30.00003
S1162P1162PccAccG66B.1.20.000053
S1162P1162PccAccG66B.1.5260.000141
S1162P1162PccAccT55AY.330.000334
S1162P1162PccAccG45B.1.10.000073
S1162P1162PccAccT15B.1.10.000018
S1162P1162PccAccT24AY.1030.000012
S1162P1162PccAccG24AY.1030.000012
S1162P1162PccAccT44AY.610.000419
S1162P1162PccAccG44B.1.2210.000284
S1162P1162PccAccG44B.1.3510.000119
S1162P1162PccAccC24P.10.000032
S1162P1162PccAccT14P.10.000016
S1162P1162PccAccG14P.10.000016
S1162P1162PccAccG23AY.1190.000071
S1162P1162PccAccT13AY.1190.000035
S1162P1162PccAccG33AY.160.001139
S1162P1162PccAccC23AY.260.000057
S1162P1162PccAccG13AY.260.000028
S1162P1162PccAccC33AY.98.10.000145
S1162P1162PccAccG33B.1.1.2770.002276
S1162P1162PccAccG33B.1.1.3160.002775
S1162P1162PccAccG33B.1.1.3390.031579
S1162P1162PccAccG33B.1.429.10.036145
S1162P1162PccAccT22A.290.010638
S1162P1162PccAccG22AY.1000.000092
S1162P1162PccAccG12AY.290.000016
S1162P1162PccAccT12AY.290.000016
S1162P1162PccAccT22AY.60.000082
S1162P1162PccAccT22AY.90.000135
S1162P1162PccAccG22B.1.1.3480.001592
S1162P1162PccAccT22B.1.1.5280.009615
S1162P1162PccAccG22B.1.1.630.000772
S1162P1162PccAccG22B.1.2430.000139
S1162P1162PccAccG22B.1.360.000292
S1162P1162PccAccG22B.1.3780.013699
S1162P1162PccAccT22B.1.466.20.000782
S1162P1162PccAccG22B.1.6210.000177
S1162P1162PccAccT110.055556
S1162P1162PccAccT11A.10.000282
S1162P1162PccAccC11A.280.002646
S1162P1162PccAccG11AY.10.000396
S1162P1162PccAccT11AY.1010.00049
S1162P1162PccAccG11AY.1080.001103
S1162P1162PccAccG11AY.1110.000183
S1162P1162PccAccG11AY.1170.000085
S1162P1162PccAccG11AY.1200.000037
S1162P1162PccAccG11AY.380.000499
S1162P1162PccAccC11AY.4.20.000022
S1162P1162PccAccT11AY.4.2.10.000149
S1162P1162PccAccT11AY.4.50.000107
S1162P1162PccAccG11AY.420.00004
S1162P1162PccAccT11AY.450.000122
S1162P1162PccAccG11AY.500.000799
S1162P1162PccAccG11AY.660.00107
S1162P1162PccAccG11AY.70.000196
S1162P1162PccAccT11AY.730.000665
S1162P1162PccAccT11AY.750.000056
S1162P1162PccAccG11AY.850.000427
S1162P1162PccAccT11AY.99.20.000092
S1162P1162PccAccT11B0.000128
S1162P1162PccAccG11B.1.1.1910.004762
S1162P1162PccAccG11B.1.1.390.00051
S1162P1162PccAccG11B.1.1.5180.006329
S1162P1162PccAccG11B.1.258.110.000396
S1162P1162PccAccT11B.1.3690.000285
S1162P1162PccAccG11B.1.3810.007812
S1162P1162PccAccT11B.1.4290.000024
S1162P1162PccAccT11B.1.5170.000427
S1162P1162PccAccG11B.1.5250.000113
S1162P1162PccAccG11B.1.6370.000073
S1162P1162PccAccG11C.1.20.004255
S1162P1162PccAccT11C.30.007634
S1162P1162PccAccG11D.20.000075
S1162P1162PccAccG11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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