CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = N919N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S919N919NsynaaCaaT17531753124317-24319

Details of the mutation N919N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S919N919NaaCaaT17531753All0.000335
S919N919NaaCaaT411411B.1.1.70.000368
S919N919NaaCaaT337337AY.50.006959
S919N919NaaCaaT231231AY.40.00036
S919N919NaaCaaT9494B.1.20.000828
S919N919NaaCaaT8787AY.250.000523
S919N919NaaCaaT7676AY.440.000463
S919N919NaaCaaT3737B.1.6280.013037
S919N919NaaCaaT3535B.1.617.20.000132
S919N919NaaCaaT2727AY.30.000269
S919N919NaaCaaT2626B.10.000238
S919N919NaaCaaT2626B.1.1.4200.026157
S919N919NaaCaaT1919C.370.002205
S919N919NaaCaaT1818B.1.5291
S919N919NaaCaaT1717AY.1170.001437
S919N919NaaCaaT1717C.360.015483
S919N919NaaCaaT1616B.1.4290.000376
S919N919NaaCaaT1616P.10.000252
S919N919NaaCaaT1313AY.230.000907
S919N919NaaCaaT1212AY.430.000053
S919N919NaaCaaT1111AY.1030.000068
S919N919NaaCaaT1010AY.360.001482
S919N919NaaCaaT88B.1.3510.000238
S919N919NaaCaaT77AY.460.000729
S919N919NaaCaaT77B.1.1.3180.002112
S919N919NaaCaaT66AY.140.000528
S919N919NaaCaaT66AY.4.20.00013
S919N919NaaCaaT66B.1.1470.004535
S919N919NaaCaaT66B.1.1770.000079
S919N919NaaCaaT66B.1.177.870.004367
S919N919NaaCaaT66B.1.499.10.666667
S919N919NaaCaaT55AY.1020.000133
S919N919NaaCaaT55AY.200.000194
S919N919NaaCaaT55AY.39.10.000198
S919N919NaaCaaT55AY.46.50.000992
S919N919NaaCaaT55B.1.10.000091
S919N919NaaCaaT55P.1.140.000239
S919N919NaaCaaT44AY.60.000165
S919N919NaaCaaT44AY.70.000784
S919N919NaaCaaT44B.1.4970.001259
S919N919NaaCaaT33AY.1000.000138
S919N919NaaCaaT33AY.1210.000406
S919N919NaaCaaT33AY.520.002443
S919N919NaaCaaT33AY.7.10.000338
S919N919NaaCaaT33AY.750.000168
S919N919NaaCaaT33B.1.1600.000094
S919N919NaaCaaT33B.1.177.440.001557
S919N919NaaCaaT33B.1.360.000438
S919N919NaaCaaT220.111111
S919N919NaaCaaT22A.10.000564
S919N919NaaCaaT22AY.16.10.00094
S919N919NaaCaaT22AY.260.000057
S919N919NaaCaaT22AY.290.000032
S919N919NaaCaaT22AY.390.000049
S919N919NaaCaaT22AY.46.60.000144
S919N919NaaCaaT22AY.540.000191
S919N919NaaCaaT22AY.920.000575
S919N919NaaCaaT22B.1.1.2220.000408
S919N919NaaCaaT22B.1.1.3980.006452
S919N919NaaCaaT22B.1.1.5190.000079
S919N919NaaCaaT22B.1.1.5260.007092
S919N919NaaCaaT22B.1.177.40.000422
S919N919NaaCaaT22B.1.177.810.000379
S919N919NaaCaaT22B.1.4740.003802
S919N919NaaCaaT22B.1.5090.001732
S919N919NaaCaaT22B.1.5610.000794
S919N919NaaCaaT22B.1.6370.000146
S919N919NaaCaaT22Q.30.00029
S919N919NaaCaaT11A.2.50.000499
S919N919NaaCaaT11AY.1100.000113
S919N919NaaCaaT11AY.1130.000142
S919N919NaaCaaT11AY.1180.000063
S919N919NaaCaaT11AY.1200.000037
S919N919NaaCaaT11AY.120.10.000321
S919N919NaaCaaT11AY.120.2.10.000498
S919N919NaaCaaT11AY.270.000065
S919N919NaaCaaT11AY.3.10.000085
S919N919NaaCaaT11AY.330.000067
S919N919NaaCaaT11AY.340.000097
S919N919NaaCaaT11AY.450.000122
S919N919NaaCaaT11AY.470.000031
S919N919NaaCaaT11AY.5.30.000337
S919N919NaaCaaT11AY.570.000656
S919N919NaaCaaT11AY.590.00053
S919N919NaaCaaT11AY.610.000105
S919N919NaaCaaT11AY.620.000436
S919N919NaaCaaT11AY.630.000387
S919N919NaaCaaT11AY.730.000665
S919N919NaaCaaT11AY.740.000116
S919N919NaaCaaT11B0.000128
S919N919NaaCaaT11B.1.1.1200.033333
S919N919NaaCaaT11B.1.1.2140.000055
S919N919NaaCaaT11B.1.1.2160.00089
S919N919NaaCaaT11B.1.1.2650.003155
S919N919NaaCaaT11B.1.1.3110.000358
S919N919NaaCaaT11B.1.177.210.000076
S919N919NaaCaaT11B.1.177.320.00135
S919N919NaaCaaT11B.1.177.720.00339
S919N919NaaCaaT11B.1.2060.000816
S919N919NaaCaaT11B.1.3490.000715
S919N919NaaCaaT11B.1.36.310.001751
S919N919NaaCaaT11B.1.4090.000781
S919N919NaaCaaT11B.1.4160.001269
S919N919NaaCaaT11B.1.4270.00005
S919N919NaaCaaT11B.1.4680.005714
S919N919NaaCaaT11B.1.5250.000113
S919N919NaaCaaT11B.1.5260.000024
S919N919NaaCaaT11B.1.5270.003704
S919N919NaaCaaT11B.1.5470.02439
S919N919NaaCaaT11B.1.5480.035714
S919N919NaaCaaT11B.1.5760.000907
S919N919NaaCaaT11B.1.5960.000087
S919N919NaaCaaT11B.1.6120.002653
S919N919NaaCaaT11B.400.000364
S919N919NaaCaaT11C.10.002392
S919N919NaaCaaT11C.37.10.002618
S919N919NaaCaaT11D.20.000075
S919N919NaaCaaT11P.1.120.000484
S919N919NaaCaaT11P.1.150.000232
S919N919NaaCaaT11P.1.170.000162
S919N919NaaCaaT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.