CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 919 | N919N | syn | aaC | aaT | 1753 | 1753 | 1 | 24317-24319 |
Details of the mutation N919N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 919 | N919N | aaC | aaT | 1753 | 1753 | All | 0.000335 |
S | 919 | N919N | aaC | aaT | 411 | 411 | B.1.1.7 | 0.000368 |
S | 919 | N919N | aaC | aaT | 337 | 337 | AY.5 | 0.006959 |
S | 919 | N919N | aaC | aaT | 231 | 231 | AY.4 | 0.00036 |
S | 919 | N919N | aaC | aaT | 94 | 94 | B.1.2 | 0.000828 |
S | 919 | N919N | aaC | aaT | 87 | 87 | AY.25 | 0.000523 |
S | 919 | N919N | aaC | aaT | 76 | 76 | AY.44 | 0.000463 |
S | 919 | N919N | aaC | aaT | 37 | 37 | B.1.628 | 0.013037 |
S | 919 | N919N | aaC | aaT | 35 | 35 | B.1.617.2 | 0.000132 |
S | 919 | N919N | aaC | aaT | 27 | 27 | AY.3 | 0.000269 |
S | 919 | N919N | aaC | aaT | 26 | 26 | B.1 | 0.000238 |
S | 919 | N919N | aaC | aaT | 26 | 26 | B.1.1.420 | 0.026157 |
S | 919 | N919N | aaC | aaT | 19 | 19 | C.37 | 0.002205 |
S | 919 | N919N | aaC | aaT | 18 | 18 | B.1.529 | 1 |
S | 919 | N919N | aaC | aaT | 17 | 17 | AY.117 | 0.001437 |
S | 919 | N919N | aaC | aaT | 17 | 17 | C.36 | 0.015483 |
S | 919 | N919N | aaC | aaT | 16 | 16 | B.1.429 | 0.000376 |
S | 919 | N919N | aaC | aaT | 16 | 16 | P.1 | 0.000252 |
S | 919 | N919N | aaC | aaT | 13 | 13 | AY.23 | 0.000907 |
S | 919 | N919N | aaC | aaT | 12 | 12 | AY.43 | 0.000053 |
S | 919 | N919N | aaC | aaT | 11 | 11 | AY.103 | 0.000068 |
S | 919 | N919N | aaC | aaT | 10 | 10 | AY.36 | 0.001482 |
S | 919 | N919N | aaC | aaT | 8 | 8 | B.1.351 | 0.000238 |
S | 919 | N919N | aaC | aaT | 7 | 7 | AY.46 | 0.000729 |
S | 919 | N919N | aaC | aaT | 7 | 7 | B.1.1.318 | 0.002112 |
S | 919 | N919N | aaC | aaT | 6 | 6 | AY.14 | 0.000528 |
S | 919 | N919N | aaC | aaT | 6 | 6 | AY.4.2 | 0.00013 |
S | 919 | N919N | aaC | aaT | 6 | 6 | B.1.147 | 0.004535 |
S | 919 | N919N | aaC | aaT | 6 | 6 | B.1.177 | 0.000079 |
S | 919 | N919N | aaC | aaT | 6 | 6 | B.1.177.87 | 0.004367 |
S | 919 | N919N | aaC | aaT | 6 | 6 | B.1.499.1 | 0.666667 |
S | 919 | N919N | aaC | aaT | 5 | 5 | AY.102 | 0.000133 |
S | 919 | N919N | aaC | aaT | 5 | 5 | AY.20 | 0.000194 |
S | 919 | N919N | aaC | aaT | 5 | 5 | AY.39.1 | 0.000198 |
S | 919 | N919N | aaC | aaT | 5 | 5 | AY.46.5 | 0.000992 |
S | 919 | N919N | aaC | aaT | 5 | 5 | B.1.1 | 0.000091 |
S | 919 | N919N | aaC | aaT | 5 | 5 | P.1.14 | 0.000239 |
S | 919 | N919N | aaC | aaT | 4 | 4 | AY.6 | 0.000165 |
S | 919 | N919N | aaC | aaT | 4 | 4 | AY.7 | 0.000784 |
S | 919 | N919N | aaC | aaT | 4 | 4 | B.1.497 | 0.001259 |
S | 919 | N919N | aaC | aaT | 3 | 3 | AY.100 | 0.000138 |
S | 919 | N919N | aaC | aaT | 3 | 3 | AY.121 | 0.000406 |
S | 919 | N919N | aaC | aaT | 3 | 3 | AY.52 | 0.002443 |
S | 919 | N919N | aaC | aaT | 3 | 3 | AY.7.1 | 0.000338 |
S | 919 | N919N | aaC | aaT | 3 | 3 | AY.75 | 0.000168 |
S | 919 | N919N | aaC | aaT | 3 | 3 | B.1.160 | 0.000094 |
S | 919 | N919N | aaC | aaT | 3 | 3 | B.1.177.44 | 0.001557 |
S | 919 | N919N | aaC | aaT | 3 | 3 | B.1.36 | 0.000438 |
S | 919 | N919N | aaC | aaT | 2 | 2 | 0.111111 | |
S | 919 | N919N | aaC | aaT | 2 | 2 | A.1 | 0.000564 |
S | 919 | N919N | aaC | aaT | 2 | 2 | AY.16.1 | 0.00094 |
S | 919 | N919N | aaC | aaT | 2 | 2 | AY.26 | 0.000057 |
S | 919 | N919N | aaC | aaT | 2 | 2 | AY.29 | 0.000032 |
S | 919 | N919N | aaC | aaT | 2 | 2 | AY.39 | 0.000049 |
S | 919 | N919N | aaC | aaT | 2 | 2 | AY.46.6 | 0.000144 |
S | 919 | N919N | aaC | aaT | 2 | 2 | AY.54 | 0.000191 |
S | 919 | N919N | aaC | aaT | 2 | 2 | AY.92 | 0.000575 |
S | 919 | N919N | aaC | aaT | 2 | 2 | B.1.1.222 | 0.000408 |
S | 919 | N919N | aaC | aaT | 2 | 2 | B.1.1.398 | 0.006452 |
S | 919 | N919N | aaC | aaT | 2 | 2 | B.1.1.519 | 0.000079 |
S | 919 | N919N | aaC | aaT | 2 | 2 | B.1.1.526 | 0.007092 |
S | 919 | N919N | aaC | aaT | 2 | 2 | B.1.177.4 | 0.000422 |
S | 919 | N919N | aaC | aaT | 2 | 2 | B.1.177.81 | 0.000379 |
S | 919 | N919N | aaC | aaT | 2 | 2 | B.1.474 | 0.003802 |
S | 919 | N919N | aaC | aaT | 2 | 2 | B.1.509 | 0.001732 |
S | 919 | N919N | aaC | aaT | 2 | 2 | B.1.561 | 0.000794 |
S | 919 | N919N | aaC | aaT | 2 | 2 | B.1.637 | 0.000146 |
S | 919 | N919N | aaC | aaT | 2 | 2 | Q.3 | 0.00029 |
S | 919 | N919N | aaC | aaT | 1 | 1 | A.2.5 | 0.000499 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.110 | 0.000113 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.113 | 0.000142 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.118 | 0.000063 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.120 | 0.000037 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.120.1 | 0.000321 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.27 | 0.000065 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.3.1 | 0.000085 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.33 | 0.000067 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.34 | 0.000097 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.45 | 0.000122 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.47 | 0.000031 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.5.3 | 0.000337 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.57 | 0.000656 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.59 | 0.00053 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.61 | 0.000105 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.62 | 0.000436 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.63 | 0.000387 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.73 | 0.000665 |
S | 919 | N919N | aaC | aaT | 1 | 1 | AY.74 | 0.000116 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B | 0.000128 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.1.120 | 0.033333 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.1.214 | 0.000055 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.1.216 | 0.00089 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.1.265 | 0.003155 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.1.311 | 0.000358 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.177.21 | 0.000076 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.177.32 | 0.00135 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.177.72 | 0.00339 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.206 | 0.000816 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.349 | 0.000715 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.36.31 | 0.001751 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.409 | 0.000781 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.416 | 0.001269 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.427 | 0.00005 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.468 | 0.005714 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.525 | 0.000113 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.526 | 0.000024 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.527 | 0.003704 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.547 | 0.02439 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.548 | 0.035714 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.576 | 0.000907 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.596 | 0.000087 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.1.612 | 0.002653 |
S | 919 | N919N | aaC | aaT | 1 | 1 | B.40 | 0.000364 |
S | 919 | N919N | aaC | aaT | 1 | 1 | C.1 | 0.002392 |
S | 919 | N919N | aaC | aaT | 1 | 1 | C.37.1 | 0.002618 |
S | 919 | N919N | aaC | aaT | 1 | 1 | D.2 | 0.000075 |
S | 919 | N919N | aaC | aaT | 1 | 1 | P.1.12 | 0.000484 |
S | 919 | N919N | aaC | aaT | 1 | 1 | P.1.15 | 0.000232 |
S | 919 | N919N | aaC | aaT | 1 | 1 | P.1.17 | 0.000162 |
S | 919 | N919N | aaC | aaT | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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