CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = N709del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S709N709deldelAAT---3434123687-23689

Details of the mutation N709del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S709N709delAAT---3434All0.000007
S709N709delAAT---55AY.430.000022
S709N709delAAT---44P.10.000063
S709N709delAAT---33B.10.000027
S709N709delAAT---22AY.250.000012
S709N709delAAT---22B.1.1.70.000002
S709N709delAAT---22B.1.617.20.000008
S709N709delAAT---22B.1.6210.000177
S709N709delAAT---22P.1.150.000465
S709N709delAAT---11AY.1000.000046
S709N709delAAT---11AY.1030.000006
S709N709delAAT---11AY.440.000006
S709N709delAAT---11AY.670.000464
S709N709delAAT---11B.1.1.3720.000689
S709N709delAAT---11B.1.1.4090.002833
S709N709delAAT---11B.1.20.000009
S709N709delAAT---11B.1.6200.000946
S709N709delAAT---11B.1.6270.00202
S709N709delAAT---11B.1.6380.052632
S709N709delAAT---11C.370.000116
S709N709delAAT---11P.1.130.000898

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.