CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 211 | N211del | del | AAT | --- | 917 | 917 | 1 | 22193-22195 |
Details of the mutation N211del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 211 | N211del | AAT | --- | 917 | 917 | All | 0.000175 |
S | 211 | N211del | AAT | --- | 301 | 301 | AY.111 | 0.055128 |
S | 211 | N211del | AAT | --- | 97 | 97 | A.29 | 0.515957 |
S | 211 | N211del | AAT | --- | 80 | 80 | B.1.1.7 | 0.000072 |
S | 211 | N211del | AAT | --- | 71 | 71 | AY.4 | 0.000111 |
S | 211 | N211del | AAT | --- | 33 | 33 | B.1.617.2 | 0.000124 |
S | 211 | N211del | AAT | --- | 30 | 30 | N.10 | 0.882353 |
S | 211 | N211del | AAT | --- | 19 | 19 | AY.3 | 0.000189 |
S | 211 | N211del | AAT | --- | 18 | 18 | AY.43 | 0.00008 |
S | 211 | N211del | AAT | --- | 16 | 16 | B.1 | 0.000147 |
S | 211 | N211del | AAT | --- | 14 | 14 | AY.26 | 0.000396 |
S | 211 | N211del | AAT | --- | 12 | 12 | AY.4.5 | 0.00129 |
S | 211 | N211del | AAT | --- | 9 | 9 | AY.54 | 0.000858 |
S | 211 | N211del | AAT | --- | 8 | 8 | AY.103 | 0.00005 |
S | 211 | N211del | AAT | --- | 8 | 8 | AY.32 | 0.00426 |
S | 211 | N211del | AAT | --- | 8 | 8 | B.1.177 | 0.000105 |
S | 211 | N211del | AAT | --- | 7 | 7 | B.1.621 | 0.00062 |
S | 211 | N211del | AAT | --- | 7 | 7 | P.1 | 0.00011 |
S | 211 | N211del | AAT | --- | 7 | 7 | P.1.15 | 0.001626 |
S | 211 | N211del | AAT | --- | 6 | 6 | AY.9.2 | 0.00022 |
S | 211 | N211del | AAT | --- | 6 | 6 | B.1.160 | 0.000187 |
S | 211 | N211del | AAT | --- | 6 | 6 | B.1.234 | 0.000792 |
S | 211 | N211del | AAT | --- | 6 | 6 | C.37 | 0.000696 |
S | 211 | N211del | AAT | --- | 5 | 5 | A.2.5 | 0.002495 |
S | 211 | N211del | AAT | --- | 5 | 5 | AY.20 | 0.000194 |
S | 211 | N211del | AAT | --- | 5 | 5 | AY.44 | 0.00003 |
S | 211 | N211del | AAT | --- | 5 | 5 | B.1.1 | 0.000091 |
S | 211 | N211del | AAT | --- | 5 | 5 | B.1.177.12 | 0.000758 |
S | 211 | N211del | AAT | --- | 5 | 5 | B.1.243 | 0.000348 |
S | 211 | N211del | AAT | --- | 4 | 4 | AY.120 | 0.000149 |
S | 211 | N211del | AAT | --- | 4 | 4 | AY.3.1 | 0.000341 |
S | 211 | N211del | AAT | --- | 4 | 4 | AY.4.2.1 | 0.000596 |
S | 211 | N211del | AAT | --- | 4 | 4 | AY.47 | 0.000124 |
S | 211 | N211del | AAT | --- | 4 | 4 | AY.6 | 0.000165 |
S | 211 | N211del | AAT | --- | 3 | 3 | AY.100 | 0.000138 |
S | 211 | N211del | AAT | --- | 3 | 3 | AY.25 | 0.000018 |
S | 211 | N211del | AAT | --- | 3 | 3 | AY.71 | 0.001425 |
S | 211 | N211del | AAT | --- | 3 | 3 | B.1.351 | 0.000089 |
S | 211 | N211del | AAT | --- | 2 | 2 | A | 0.000774 |
S | 211 | N211del | AAT | --- | 2 | 2 | AY.102 | 0.000053 |
S | 211 | N211del | AAT | --- | 2 | 2 | AY.105 | 0.001286 |
S | 211 | N211del | AAT | --- | 2 | 2 | AY.119 | 0.000071 |
S | 211 | N211del | AAT | --- | 2 | 2 | AY.23 | 0.000139 |
S | 211 | N211del | AAT | --- | 2 | 2 | AY.24 | 0.000862 |
S | 211 | N211del | AAT | --- | 2 | 2 | AY.39 | 0.000049 |
S | 211 | N211del | AAT | --- | 2 | 2 | AY.4.2 | 0.000043 |
S | 211 | N211del | AAT | --- | 2 | 2 | AY.61 | 0.00021 |
S | 211 | N211del | AAT | --- | 2 | 2 | AY.85 | 0.000854 |
S | 211 | N211del | AAT | --- | 2 | 2 | B.1.1.37 | 0.000386 |
S | 211 | N211del | AAT | --- | 2 | 2 | B.1.177.52 | 0.003515 |
S | 211 | N211del | AAT | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 211 | N211del | AAT | --- | 2 | 2 | B.1.258 | 0.000133 |
S | 211 | N211del | AAT | --- | 2 | 2 | B.1.575 | 0.000607 |
S | 211 | N211del | AAT | --- | 2 | 2 | C.11 | 0.021277 |
S | 211 | N211del | AAT | --- | 1 | 1 | A.2 | 0.000662 |
S | 211 | N211del | AAT | --- | 1 | 1 | AA.1 | 0.007246 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.27 | 0.000065 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.29 | 0.000016 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.30 | 0.000396 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.33 | 0.000067 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.38 | 0.000499 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.39.1 | 0.00004 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.42 | 0.00004 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.46 | 0.000104 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.46.4 | 0.000165 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.46.6 | 0.000072 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.53 | 0.000288 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.7 | 0.000196 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.87 | 0.000833 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.96 | 0.002075 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.98 | 0.000079 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.98.1 | 0.000048 |
S | 211 | N211del | AAT | --- | 1 | 1 | AY.99.1 | 0.001553 |
S | 211 | N211del | AAT | --- | 1 | 1 | AZ.2 | 0.000821 |
S | 211 | N211del | AAT | --- | 1 | 1 | B | 0.000128 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.1.214 | 0.000055 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.1.398 | 0.003226 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.140 | 0.018868 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.218 | 0.005155 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.351.2 | 0.000303 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.409 | 0.000781 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.466.2 | 0.000391 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.517 | 0.000427 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.599 | 0.00365 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.630 | 0.005236 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.637 | 0.000073 |
S | 211 | N211del | AAT | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 211 | N211del | AAT | --- | 1 | 1 | C.1.2 | 0.004255 |
S | 211 | N211del | AAT | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 211 | N211del | AAT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|