CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = N1173N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1173N1173NsynaaTaaC844844125079-25081

Details of the mutation N1173N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1173N1173NaaTaaC844844All0.000161
S1173N1173NaaTaaC219219B.1.5960.019083
S1173N1173NaaTaaC143143AY.430.000634
S1173N1173NaaTaaC128128AY.1180.008019
S1173N1173NaaTaaC7777B.1.1600.002401
S1173N1173NaaTaaC3737B.1.1.70.000033
S1173N1173NaaTaaC3535B.1.617.20.000132
S1173N1173NaaTaaC2424AY.60.000987
S1173N1173NaaTaaC2121AY.440.000128
S1173N1173NaaTaaC2020B.1.5250.002263
S1173N1173NaaTaaC1212AY.1030.000075
S1173N1173NaaTaaC1111AY.40.000017
S1173N1173NaaTaaC99AY.39.10.000357
S1173N1173NaaTaaC88AY.140.000704
S1173N1173NaaTaaC66AY.250.000036
S1173N1173NaaTaaC66AY.30.00006
S1173N1173NaaTaaC66B.10.000055
S1173N1173NaaTaaC55A.300.714286
S1173N1173NaaTaaC55AY.330.000334
S1173N1173NaaTaaC55AY.690.000933
S1173N1173NaaTaaC44Q.80.00066
S1173N1173NaaTaaC33AY.1090.002219
S1173N1173NaaTaaC33AY.1200.000112
S1173N1173NaaTaaC33AY.470.000093
S1173N1173NaaTaaC33B.1.177.150.001893
S1173N1173NaaTaaC33B.1.2400.000647
S1173N1173NaaTaaC22AY.100.00106
S1173N1173NaaTaaC22AY.1000.000092
S1173N1173NaaTaaC22AY.380.000999
S1173N1173NaaTaaC22AY.610.00021
S1173N1173NaaTaaC22AY.840.000875
S1173N1173NaaTaaC22AY.920.000575
S1173N1173NaaTaaC22B.1.1.250.001137
S1173N1173NaaTaaC22B.1.1.3170.000823
S1173N1173NaaTaaC22P.10.000032
S1173N1173NaaTaaC110.055556
S1173N1173NaaTaaC11AY.1020.000027
S1173N1173NaaTaaC11AY.1160.000287
S1173N1173NaaTaaC11AY.1190.000035
S1173N1173NaaTaaC11AY.200.000039
S1173N1173NaaTaaC11AY.260.000028
S1173N1173NaaTaaC11AY.360.000148
S1173N1173NaaTaaC11AY.410.000294
S1173N1173NaaTaaC11AY.420.00004
S1173N1173NaaTaaC11AY.460.000104
S1173N1173NaaTaaC11AY.540.000095
S1173N1173NaaTaaC11AY.580.000907
S1173N1173NaaTaaC11AY.75.10.00018
S1173N1173NaaTaaC11AY.98.10.000048
S1173N1173NaaTaaC11B0.000128
S1173N1173NaaTaaC11B.1.10.000018
S1173N1173NaaTaaC11B.1.1.2140.000055
S1173N1173NaaTaaC11B.1.1.3540.004386
S1173N1173NaaTaaC11B.1.1.500.000679
S1173N1173NaaTaaC11B.1.1.5190.00004
S1173N1173NaaTaaC11B.1.20.000009
S1173N1173NaaTaaC11B.1.36.170.000494
S1173N1173NaaTaaC11B.1.4290.000024
S1173N1173NaaTaaC11B.1.4380.006536
S1173N1173NaaTaaC11B.1.4650.003802
S1173N1173NaaTaaC11B.1.5260.000024
S1173N1173NaaTaaC11B.1.5680.001111
S1173N1173NaaTaaC11B.390.002331
S1173N1173NaaTaaC11C.350.000774
S1173N1173NaaTaaC11C.370.000116

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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